CuGenDBv2

Gene ID	Lsi01G019400
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Rhodanese domain-containing protein
Genome location	chr01:24820297..24870481
RNA-Seq Expression	Lsi01G019400
Synteny	Lsi01G019400
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR044615 - Rhodanese-like domain-containing protein 9, chloroplastic

Homology

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GenBank top hits

e value

%identity

Alignment

RZC46716.1 hypothetical protein C5167_039660 [Papaver somniferum]

1.1e-29

67.89

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Query:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ
        S+AAA++LEKAGFENI+CITSGLQSVKPG+I                   H++ TF+SVGS ELQ+AGKAGLVT+QGKISAVLGTVLICAYLFIT FP+Q
Subjt:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ

Query:  AEKLLQMAP
        AEK+LQM P
Subjt:  AEKLLQMAP

XP_004144667.1 rhodanese-like domain-containing protein 9, chloroplastic [Cucumis sativus]

6.8e-32

74.55

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Query:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ
        STAAADKLEKAGFENIACITSGLQSVKP                         G+FDSVGST+LQDAGKAGLVTIQGKISAVLGTVLICAYLF+TLFPEQ
Subjt:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ

Query:  AEKLLQMAPT
        AEKLLQMAPT
Subjt:  AEKLLQMAPT

XP_008442228.1 PREDICTED: rhodanese-like domain-containing protein 9, chloroplastic isoform X1 [Cucumis melo]

3.0e-32

74.77

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Query:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ
        STAAADKL+KAGFENIACITSGLQSVKP                         GTF+SVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ
Subjt:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ

Query:  AEKLLQMAPTN
        AEKLLQMAPT+
Subjt:  AEKLLQMAPTN

XP_022155002.1 rhodanese-like domain-containing protein 9, chloroplastic isoform X1 [Momordica charantia]

1.0e-32

75.68

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Query:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ
        STAAAD+LEKAGFENIACITSGLQSVKP                         GTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ
Subjt:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ

Query:  AEKLLQMAPTN
        AEKLLQMAPT+
Subjt:  AEKLLQMAPTN

XP_038883761.1 rhodanese-like domain-containing protein 9, chloroplastic [Benincasa hispida]

1.4e-32

75.68

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Query:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ
        STAAADKLEKAGFENIACITSGLQSVKP                         GTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFIT FPEQ
Subjt:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ

Query:  AEKLLQMAPTN
        AEKLLQMAPT+
Subjt:  AEKLLQMAPTN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2N4 Rhodanese domain-containing protein

3.3e-32

74.55

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Query:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ
        STAAADKLEKAGFENIACITSGLQSVKP                         G+FDSVGST+LQDAGKAGLVTIQGKISAVLGTVLICAYLF+TLFPEQ
Subjt:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ

Query:  AEKLLQMAPT
        AEKLLQMAPT
Subjt:  AEKLLQMAPT

A0A1S3B5W0 rhodanese-like domain-containing protein 9, chloroplastic isoform X1

1.5e-32

74.77

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Query:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ
        STAAADKL+KAGFENIACITSGLQSVKP                         GTF+SVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ
Subjt:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ

Query:  AEKLLQMAPTN
        AEKLLQMAPT+
Subjt:  AEKLLQMAPTN

A0A4Y7IF93 Rhodanese domain-containing protein

5.2e-30

67.89

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Query:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ
        S+AAA++LEKAGFENI+CITSGLQSVKPG+I                   H++ TF+SVGS ELQ+AGKAGLVT+QGKISAVLGTVLICAYLFIT FP+Q
Subjt:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ

Query:  AEKLLQMAP
        AEK+LQM P
Subjt:  AEKLLQMAP

A0A5A7TCE9 Rhodanese-like domain-containing protein 9

1.5e-32

74.77

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Query:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ
        STAAADKL+KAGFENIACITSGLQSVKP                         GTF+SVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ
Subjt:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ

Query:  AEKLLQMAPTN
        AEKLLQMAPT+
Subjt:  AEKLLQMAPTN

A0A6J1DN76 rhodanese-like domain-containing protein 9, chloroplastic isoform X1

5.0e-33

75.68

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Query:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ
        STAAAD+LEKAGFENIACITSGLQSVKP                         GTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ
Subjt:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ

Query:  AEKLLQMAPTN
        AEKLLQMAPT+
Subjt:  AEKLLQMAPTN

SwissProt top hits

e value

%identity

Alignment

O48529 Rhodanese-like domain-containing protein 9, chloroplastic

6.8e-27

63.46

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Query:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ
        S AAA +LE+AG+ENIAC+TSGLQSVKP                         GTF+SVGSTELQ+AGKAGL+TIQGKISAVLGTVL+CAYLFI  FP+Q
Subjt:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ

Query:  AEKL
        AEKL
Subjt:  AEKL

Arabidopsis top hits

e value

%identity

Alignment

AT2G42220.1 Rhodanese/Cell cycle control phosphatase superfamily protein

4.8e-28

63.46

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Query:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ
        S AAA +LE+AG+ENIAC+TSGLQSVKP                         GTF+SVGSTELQ+AGKAGL+TIQGKISAVLGTVL+CAYLFI  FP+Q
Subjt:  STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQ

Query:  AEKL
        AEKL
Subjt:  AEKL

Sequences

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CDS sequence

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mRNA sequence

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TCCACTGCTGCTGCTGATAAGTTAGAGAAAGCTGGTTTTGAAAACATAGCTTGTATAACATCAGGACTCCAATCTGTCAAACCAGGTCAAATTTTCAAACCTTACTCCAA
ATACTCTATATATTTTAACTCCAAGTTTAAAACAAGAAATCACATTTTTGGCACATTTGACTCGGTTGGTTCGACCGAGTTACAAGATGCTGGCAAAGCTGGTTTGGTGA
CGATCCAAGGCAAAATTTCAGCTGTACTAGGAACTGTTCTCATCTGTGCATATTTATTCATAACTCTCTTTCCAGAACAGGCTGAGAAGCTGCTTCAAATGGCACCAACA
AATTAAACTATTGTCTAAACATTAGCCTTTTAATTTTAATTTTAATTTTTGTTTAGGTATTATAATTAATTGCCATTTTTAAGTGCATATTTCCATACCATCTTGACGAC
TTTATAAACGTAATGTTTATTAGCTCAATTGGTTAGATATCAATGTCTTTCCCTATGAATTGTAGATTTAAATTAGGGTTGTTTTCAAATATAGAAAAATGAGCCAAACT
ATTTACAAATATAAAAAATTTTACCGTCTATCAG

Protein sequence

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STAAADKLEKAGFENIACITSGLQSVKPGQIFKPYSKYSIYFNSKFKTRNHIFGTFDSVGSTELQDAGKAGLVTIQGKISAVLGTVLICAYLFITLFPEQAEKLLQMAPT
N

Lsi01G019400 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome