; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G019550 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G019550
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type domain-containing protein
Genome locationchr01:25374850..25375544
RNA-Seq ExpressionLsi01G019550
SyntenyLsi01G019550
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649756.1 hypothetical protein Csa_012785 [Cucumis sativus]1.7e-5261.66Show/hide
Query:  MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFH
        MS   T S +  IR N   S+A+D QPLQFV+LRLR F + V TPS QILQQTSPTLISD L PF L ELEDPPF+S+FFL RFLSS+ +  A C+AIF+
Subjt:  MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFH

Query:  KISSFA---LRMAAGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEE--GDQCSVCYEELHGEKE
         ISSFA   L  A  N+N+NFHII  +D V+T WVDLDPA    +D+P VRKGA   V+ERVMKEKYDGNG EE+   DQCSVCYE+L   +E
Subjt:  KISSFA---LRMAAGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEE--GDQCSVCYEELHGEKE

XP_011650219.1 RING-H2 finger protein ATL16 [Cucumis sativus]3.1e-5964.74Show/hide
Query:  MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFH
        MS  TT S R  IR N NGS A++ QPLQFVELRL  F + V +PSHQILQQTSP LISD L  FPLRELEDPPF+SH  L RFLSS+++ +A C+AIF 
Subjt:  MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFH

Query:  KISSFALRMAAGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEEGDQCSVCYEELHGEKEEK
        KISSFA ++ AGNLN NFHII A+DFV+T WVDLDPA    +D+  VR+GAP   +ER+MKEKYDGNG EE  D+CSVCYE+LHG+ E++
Subjt:  KISSFALRMAAGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEEGDQCSVCYEELHGEKEEK

XP_022947840.1 probable E3 ubiquitin-protein ligase RHA4A [Cucurbita moschata]1.4e-4353.19Show/hide
Query:  MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFH
        ++F  +LS +   R+N  G++AS +QP+QFVELRL      +   S QILQQT  T + DALFPF LR+L  PPFLS   +LRFLSSF +P A CN IF 
Subjt:  MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFH

Query:  KISSFALRMAAGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEEGDQCSVCYEELHGEKE
        +ISSFAL +AAGN++LNFHI+V +D +  +WVDLDP  L+ + SPP   GAPA  +ER+ ++++DG   EEEG +CSVC E L GE+E
Subjt:  KISSFALRMAAGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEEGDQCSVCYEELHGEKE

XP_022947933.1 E3 ubiquitin-protein ligase RNF126-like [Cucurbita moschata]1.4e-4352.13Show/hide
Query:  MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFH
        ++F   LS +  I+S  NG+VASD QP+Q +ELRL      +   S QILQQT  T + DALFPF LR+L+ PPFLS+ ++L+FLSSF +P AAC+ I+ 
Subjt:  MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFH

Query:  KISSFALRMAAGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEEGDQCSVCYEELHGEKE
        +ISSFAL++AAGN++LNFHI+V +D +  +WVDLDP  LV + SP    GAPA  +ER+ ++++DG   EEE   CSVC E L GE+E
Subjt:  KISSFALRMAAGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEEGDQCSVCYEELHGEKE

XP_031740500.1 E3 ubiquitin-protein ligase At1g63170-like [Cucumis sativus]3.0e-5459.31Show/hide
Query:  MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFH
        MS   T S +  IR N   S+A+D QPLQFV+LRLR F + V TPS QILQQTSPTLISD L PF L ELEDPPF+S+FFL RFLSS+ +  A C+AIF+
Subjt:  MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFH

Query:  KISSFA---LRMAAGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEE--GDQCSVCYEELHGEKEEKGIRMK
         ISSFA   L  A  N+N+NFHII  +D V+T WVDLDPA    +D+P VRKGA   V+ERVMKEKYDGNG EE+   DQCSVCYE+L+G++E +  + K
Subjt:  KISSFA---LRMAAGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEE--GDQCSVCYEELHGEKEEKGIRMK

Query:  NKTK
          ++
Subjt:  NKTK

TrEMBL top hitse value%identityAlignment
A0A0A0L3Z2 RING-type domain-containing protein1.5e-5459.31Show/hide
Query:  MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFH
        MS   T S +  IR N   S+A+D QPLQFV+LRLR F + V TPS QILQQTSPTLISD L PF L ELEDPPF+S+FFL RFLSS+ +  A C+AIF+
Subjt:  MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFH

Query:  KISSFA---LRMAAGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEE--GDQCSVCYEELHGEKEEKGIRMK
         ISSFA   L  A  N+N+NFHII  +D V+T WVDLDPA    +D+P VRKGA   V+ERVMKEKYDGNG EE+   DQCSVCYE+L+G++E +  + K
Subjt:  KISSFA---LRMAAGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEE--GDQCSVCYEELHGEKEEKGIRMK

Query:  NKTK
          ++
Subjt:  NKTK

A0A0A0LRB0 RING-type domain-containing protein1.5e-5964.74Show/hide
Query:  MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFH
        MS  TT S R  IR N NGS A++ QPLQFVELRL  F + V +PSHQILQQTSP LISD L  FPLRELEDPPF+SH  L RFLSS+++ +A C+AIF 
Subjt:  MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFH

Query:  KISSFALRMAAGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEEGDQCSVCYEELHGEKEEK
        KISSFA ++ AGNLN NFHII A+DFV+T WVDLDPA    +D+  VR+GAP   +ER+MKEKYDGNG EE  D+CSVCYE+LHG+ E++
Subjt:  KISSFALRMAAGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEEGDQCSVCYEELHGEKEEK

A0A6J1G7Z5 E3 ubiquitin-protein ligase RNF126-like6.8e-4452.13Show/hide
Query:  MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFH
        ++F   LS +  I+S  NG+VASD QP+Q +ELRL      +   S QILQQT  T + DALFPF LR+L+ PPFLS+ ++L+FLSSF +P AAC+ I+ 
Subjt:  MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFH

Query:  KISSFALRMAAGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEEGDQCSVCYEELHGEKE
        +ISSFAL++AAGN++LNFHI+V +D +  +WVDLDP  LV + SP    GAPA  +ER+ ++++DG   EEE   CSVC E L GE+E
Subjt:  KISSFALRMAAGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEEGDQCSVCYEELHGEKE

A0A6J1G809 probable E3 ubiquitin-protein ligase RHA4A6.8e-4453.19Show/hide
Query:  MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFH
        ++F  +LS +   R+N  G++AS +QP+QFVELRL      +   S QILQQT  T + DALFPF LR+L  PPFLS   +LRFLSSF +P A CN IF 
Subjt:  MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFH

Query:  KISSFALRMAAGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEEGDQCSVCYEELHGEKE
        +ISSFAL +AAGN++LNFHI+V +D +  +WVDLDP  L+ + SPP   GAPA  +ER+ ++++DG   EEEG +CSVC E L GE+E
Subjt:  KISSFALRMAAGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEEGDQCSVCYEELHGEKE

A0A6J1L387 RING-H2 finger protein ATL16-like8.9e-4450.53Show/hide
Query:  MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFH
        ++F  +LS ++ IR+N  G++AS + P+QFVELRL      +   S QILQQ+  T + ++LFPF LR+LE PPFL ++ +L FLSSF +P AAC+ I+ 
Subjt:  MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFH

Query:  KISSFALRMAAGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEEGDQCSVCYEELHGEKE
        +ISSFALR+ A N++LNFHI+V +D +  +WVDLDP  LV + SPP   GAPA  +ER+ ++K+DG   EEE   CSVC E L GE+E
Subjt:  KISSFALRMAAGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEEGDQCSVCYEELHGEKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTCCGTACAACTCTGTCCCTCCGATATTGTATTCGCAGCAACCCCAACGGCAGCGTGGCCTCCGACGATCAACCATTGCAATTCGTTGAACTCCGATTGAGGTG
TTTCAGAGAGTCAGTGTTTACACCTTCTCACCAAATCCTCCAACAAACTTCCCCAACTCTAATTTCCGATGCTCTGTTTCCGTTCCCTCTGCGAGAGCTTGAAGACCCAC
CCTTCCTCTCCCACTTCTTCCTCCTTCGCTTTCTCTCTTCCTTCCACCTCCCCGAGGCCGCATGTAACGCCATCTTCCACAAGATCTCCTCCTTCGCCCTCCGAATGGCC
GCCGGCAACCTCAATCTCAACTTCCATATCATCGTCGCTATCGATTTTGTGCATACGCTCTGGGTGGACCTGGACCCAGCAGTGCTTGTTCCACAAGATTCGCCGCCGGT
GAGAAAAGGGGCGCCAGCATGGGTGATGGAGCGGGTAATGAAGGAGAAATATGATGGGAATGGACGGGAAGAGGAGGGAGATCAGTGCAGCGTTTGTTATGAGGAACTCC
ATGGGGAAAAGGAGGAGAAGGGAATTAGAATGAAGAATAAGACAAAATCCAAATCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTCCGTACAACTCTGTCCCTCCGATATTGTATTCGCAGCAACCCCAACGGCAGCGTGGCCTCCGACGATCAACCATTGCAATTCGTTGAACTCCGATTGAGGTG
TTTCAGAGAGTCAGTGTTTACACCTTCTCACCAAATCCTCCAACAAACTTCCCCAACTCTAATTTCCGATGCTCTGTTTCCGTTCCCTCTGCGAGAGCTTGAAGACCCAC
CCTTCCTCTCCCACTTCTTCCTCCTTCGCTTTCTCTCTTCCTTCCACCTCCCCGAGGCCGCATGTAACGCCATCTTCCACAAGATCTCCTCCTTCGCCCTCCGAATGGCC
GCCGGCAACCTCAATCTCAACTTCCATATCATCGTCGCTATCGATTTTGTGCATACGCTCTGGGTGGACCTGGACCCAGCAGTGCTTGTTCCACAAGATTCGCCGCCGGT
GAGAAAAGGGGCGCCAGCATGGGTGATGGAGCGGGTAATGAAGGAGAAATATGATGGGAATGGACGGGAAGAGGAGGGAGATCAGTGCAGCGTTTGTTATGAGGAACTCC
ATGGGGAAAAGGAGGAGAAGGGAATTAGAATGAAGAATAAGACAAAATCCAAATCCTGA
Protein sequenceShow/hide protein sequence
MSFRTTLSLRYCIRSNPNGSVASDDQPLQFVELRLRCFRESVFTPSHQILQQTSPTLISDALFPFPLRELEDPPFLSHFFLLRFLSSFHLPEAACNAIFHKISSFALRMA
AGNLNLNFHIIVAIDFVHTLWVDLDPAVLVPQDSPPVRKGAPAWVMERVMKEKYDGNGREEEGDQCSVCYEELHGEKEEKGIRMKNKTKSKS