CuGenDBv2

Gene ID	Lsi01G019620
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Mitochondrial ribosomal protein L37
Genome location	chr01:25583396..25583797
RNA-Seq Expression	Lsi01G019620
Synteny	Lsi01G019620
Gene Ontology terms	GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR013870 - Ribosomal protein L37, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8649745.1 hypothetical protein Csa_012025 [Cucumis sativus]

1.1e-52

86.36

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Query:  SMSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRR
        +MSQIRLFRR+IIV+SK+LIQLTSVRTFAAGGKSKKGSKGGAAADAPK  ILSKEVKSTTVV ANILKEGADPKIMADSEYP WLW+LL+KHPPLSELRR
Subjt:  SMSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRR

Query:  KNTKTLPYADLRRFAKLDNRAKIKENNSMKAK
        KN ++LPYADL+RF KLD RA+IKENNS+KAK
Subjt:  KNTKTLPYADLRRFAKLDNRAKIKENNSMKAK

XP_008442187.1 PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo]

3.4e-54

87.22

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Query:  MSMSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
        M +SQIR FRR+IIV+SKDLIQLTSVR+FAAGGKSKKGSKGGAAADAPK  ILSKEVKSTTVV ANILKEGADPKIMADSEYP WLWHLLDKHPPLSELR
Subjt:  MSMSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR

Query:  RKNTKTLPYADLRRFAKLDNRAKIKENNSMKAK
        RKN ++LPYADLRRF KLD RA+IKENNS+KAK
Subjt:  RKNTKTLPYADLRRFAKLDNRAKIKENNSMKAK

XP_016899597.1 PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo]

3.4e-54

87.22

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Query:  MSMSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
        M +SQIR FRR+IIV+SKDLIQLTSVR+FAAGGKSKKGSKGGAAADAPK  ILSKEVKSTTVV ANILKEGADPKIMADSEYP WLWHLLDKHPPLSELR
Subjt:  MSMSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR

Query:  RKNTKTLPYADLRRFAKLDNRAKIKENNSMKAK
        RKN ++LPYADLRRF KLD RA+IKENNS+KAK
Subjt:  RKNTKTLPYADLRRFAKLDNRAKIKENNSMKAK

XP_038883606.1 39S ribosomal protein L54, mitochondrial isoform X1 [Benincasa hispida]

1.2e-54

90.3

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Query:  MSMSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
        M MSQIRLFRRS IVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK   LSKEVKSTTVV ANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
Subjt:  MSMSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR

Query:  RKNTKTLPYADLRRFAKLDNRAKIKENNSMKAKN
        RKN +TLPY DL+RF KLD RAKIKENNS KAKN
Subjt:  RKNTKTLPYADLRRFAKLDNRAKIKENNSMKAKN

XP_038883607.1 54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida]

1.2e-54

90.3

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Query:  MSMSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
        M MSQIRLFRRS IVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK   LSKEVKSTTVV ANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
Subjt:  MSMSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR

Query:  RKNTKTLPYADLRRFAKLDNRAKIKENNSMKAKN
        RKN +TLPY DL+RF KLD RAKIKENNS KAKN
Subjt:  RKNTKTLPYADLRRFAKLDNRAKIKENNSMKAKN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYS4 Uncharacterized protein

9.0e-53

86.26

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Query:  MSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRK
        MSQ+RLFRR+IIV+SK+LIQLTSVRTFAAGGKSKKGSKGGAAADAPK  ILSKEVKSTTVV ANILKEGADPKIMADSEYP WLW+LL+KHPPLSELRRK
Subjt:  MSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRK

Query:  NTKTLPYADLRRFAKLDNRAKIKENNSMKAK
        N ++LPYADL+RF KLD RA+IKENNS+KAK
Subjt:  NTKTLPYADLRRFAKLDNRAKIKENNSMKAK

A0A1S3B544 54S ribosomal protein L37, mitochondrial isoform X2

1.6e-54

87.22

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Query:  MSMSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
        M +SQIR FRR+IIV+SKDLIQLTSVR+FAAGGKSKKGSKGGAAADAPK  ILSKEVKSTTVV ANILKEGADPKIMADSEYP WLWHLLDKHPPLSELR
Subjt:  MSMSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR

Query:  RKNTKTLPYADLRRFAKLDNRAKIKENNSMKAK
        RKN ++LPYADLRRF KLD RA+IKENNS+KAK
Subjt:  RKNTKTLPYADLRRFAKLDNRAKIKENNSMKAK

A0A1S4DUD4 39S ribosomal protein L54, mitochondrial isoform X1

1.6e-54

87.22

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Query:  MSMSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
        M +SQIR FRR+IIV+SKDLIQLTSVR+FAAGGKSKKGSKGGAAADAPK  ILSKEVKSTTVV ANILKEGADPKIMADSEYP WLWHLLDKHPPLSELR
Subjt:  MSMSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR

Query:  RKNTKTLPYADLRRFAKLDNRAKIKENNSMKAK
        RKN ++LPYADLRRF KLD RA+IKENNS+KAK
Subjt:  RKNTKTLPYADLRRFAKLDNRAKIKENNSMKAK

A0A5D3CXE8 39S ribosomal protein L54

1.6e-54

87.22

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Query:  MSMSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
        M +SQIR FRR+IIV+SKDLIQLTSVR+FAAGGKSKKGSKGGAAADAPK  ILSKEVKSTTVV ANILKEGADPKIMADSEYP WLWHLLDKHPPLSELR
Subjt:  MSMSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR

Query:  RKNTKTLPYADLRRFAKLDNRAKIKENNSMKAK
        RKN ++LPYADLRRF KLD RA+IKENNS+KAK
Subjt:  RKNTKTLPYADLRRFAKLDNRAKIKENNSMKAK

A0A6J1JQ61 54S ribosomal protein L37, mitochondrial-like

1.9e-47

80.6

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Query:  MSMSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
        M+MSQIRLFRRS++ N+KDLI+LT+VRTFAAGGK KKGSKGGAA DAPK  ILSKEVKSTTVV ANILKEGADPK+MADSEYP WLW L+DK P LSELR
Subjt:  MSMSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR

Query:  RKNTKTLPYADLRRFAKLDNRAKIKENNSMKAKN
        RK+ KTLPY DL+RF KLD RA+IKENNS KAKN
Subjt:  RKNTKTLPYADLRRFAKLDNRAKIKENNSMKAKN

SwissProt top hits

e value

%identity

Alignment

Q9CPW3 39S ribosomal protein L54, mitochondrial

9.7e-04

34.38

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Query:  KGSKGGAAADAPK--EILSKEVKSTT-VVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNTKTLPYADLRRFAKLDNRAKIKENNSM
        KG KGG AA+A K  E+ +   + TT  +  NI KEG D  + ADSEYP WL+  ++  PP  +L     ++  Y  L R   +    ++ +N  +
Subjt:  KGSKGGAAADAPK--EILSKEVKSTT-VVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNTKTLPYADLRRFAKLDNRAKIKENNSM

Arabidopsis top hits

e value

%identity

Alignment

AT3G01740.1 Mitochondrial ribosomal protein L37

2.8e-38

65.41

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Query:  MSQIRLFRRSIIVNSKDLIQLTSVRTF-AAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRR
        M++I L R S   +SKD+++    RTF AA  K+KKG KGG A+DAPK   L+KE+KSTTVV AN LK+G+DPKI+ DS+YP WLWHLLDK P LSELRR
Subjt:  MSQIRLFRRSIIVNSKDLIQLTSVRTF-AAGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRR

Query:  KNTKTLPYADLRRFAKLDNRAKIKENNSMKAKN
        KN +TLPY DL+RF KLD R KIKENNS+KAKN
Subjt:  KNTKTLPYADLRRFAKLDNRAKIKENNSMKAKN

AT5G14290.1 Mitochondrial ribosomal protein L37

1.3e-32

58.65

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Query:  MSQIRLFRRSIIVNSKDLIQLTSVRTFA-AGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRR
        M+ IR+F  S I  SKD+++    RTFA A GK+KK  +G    DAPK   LSKE+KS+ VV AN LK+G DPKI+ +S++P +LWHLLDK P LSELRR
Subjt:  MSQIRLFRRSIIVNSKDLIQLTSVRTFA-AGGKSKKGSKGGAAADAPK-EILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRR

Query:  KNTKTLPYADLRRFAKLDNRAKIKENNSMKAKN
        KN +TL + DL+RF KLD RA+IKEN+S+KAKN
Subjt:  KNTKTLPYADLRRFAKLDNRAKIKENNSMKAKN

Sequences

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CDS sequence

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ATGAGTATGAGCCAAATTAGATTGTTTAGAAGAAGCATTATTGTCAATAGCAAAGATCTAATACAACTGACATCTGTGCGAACATTCGCTGCTGGAGGCAAATCAAAGAA
GGGGTCTAAAGGGGGTGCAGCTGCTGATGCTCCTAAAGAAATTCTAAGTAAAGAGGTCAAGTCTACTACTGTTGTTTGTGCCAATATTCTCAAGGAAGGTGCAGATCCAA
AAATTATGGCAGACTCAGAGTACCCTGTTTGGCTGTGGCATTTGCTTGATAAACATCCCCCCCTAAGCGAATTACGAAGGAAGAATACCAAAACCCTTCCCTACGCAGAT
CTCAGACGCTTTGCTAAATTAGATAATCGAGCAAAGATCAAGGAAAACAATTCTATGAAGGCCAAGAATTGA

mRNA sequence

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Protein sequence

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MSMSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKEILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNTKTLPYAD
LRRFAKLDNRAKIKENNSMKAKN

Lsi01G019620 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome