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Lsi01G019930 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G019930
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNA polymerase II transcriptional coactivator KIWI-like
Genome locationchr01:26669926..26681443
RNA-Seq ExpressionLsi01G019930
SyntenyLsi01G019930
Gene Ontology termsGO:0060261 - positive regulation of transcription initiation from RNA polymerase II promoter (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005667 - transcription factor complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003713 - transcription coactivator activity (molecular function)
InterPro domainsIPR003173 - Transcriptional coactivator p15 (PC4), C-terminal
IPR009044 - ssDNA-binding transcriptional regulator
IPR045125 - RNA polymerase II transcriptional coactivator Sub1/Tcp4-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603408.1 RNA polymerase II transcriptional coactivator KIWI, partial [Cucurbita argyrosperma subsp. sororia]9.3e-5072.6Show/hide
Query:  MSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIEN
        MSARGKRKD+EDH +EGDAPP KTF++D DETDEIV+CEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHV+EIDKAV EN
Subjt:  MSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIEN

Query:  SVSLHRIILLYDVKTVTFCTANGLVFGGNEDQRAASFAAFKFGVCP
        S+                  ANGLVFGGNEDQRA   +++   + P
Subjt:  SVSLHRIILLYDVKTVTFCTANGLVFGGNEDQRAASFAAFKFGVCP

KAG7027581.1 RNA polymerase II transcriptional coactivator KIWI [Cucurbita argyrosperma subsp. argyrosperma]2.6e-4491.09Show/hide
Query:  MSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIEN
        MSARGKRKD+EDHA+EGDAPP KTFK++ DETDEIV+CEISKNRRVMVRNWQGKIVVDIREFYVKDGK+MPGKKGISLSLDQWNVLRNHVEEIDKAV EN
Subjt:  MSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIEN

Query:  S
        S
Subjt:  S

XP_022966500.1 RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita maxima]5.8e-4490.1Show/hide
Query:  MSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIEN
        MSARGKRKD+EDHA+EGDAPP KTFK+D +ETDEIV+CEISKNRRVMVRNWQGKIVVDIREFYVKDGK+MPGKKG SLSLDQWNVLRNHVEEIDKAV EN
Subjt:  MSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIEN

Query:  S
        S
Subjt:  S

XP_023518433.1 RNA polymerase II transcriptional coactivator KIWI-like [Cucurbita pepo subsp. pepo]6.9e-4592.08Show/hide
Query:  MSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIEN
        MSARGKRKD+EDHA+EGDAPP KTFK+D DETDEIV+CEISKNRRVMVRNWQGKIVVDIREFYVKDGK+MPGKKGISLSLDQWNVLRNHVEEIDKAV EN
Subjt:  MSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIEN

Query:  S
        S
Subjt:  S

XP_038881105.1 RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Benincasa hispida]1.1e-4594.06Show/hide
Query:  MSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIEN
        MSARGKRKDEEDHA+EGDAPPSKTFK+D D+TDEIV+CEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAV EN
Subjt:  MSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIEN

Query:  S
        S
Subjt:  S

TrEMBL top hitse value%identityAlignment
A0A6J1D5M3 RNA polymerase II transcriptional coactivator KIWI-like isoform X11.4e-4388.24Show/hide
Query:  MSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIEN
        MSARGKRKD+++HA+EGDAPP KT K+D DETDEIV+CEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLS+DQWNVLRNHVEEIDKAV EN
Subjt:  MSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIEN

Query:  SV
        S+
Subjt:  SV

A0A6J1EHI0 RNA polymerase II transcriptional coactivator KIWI-like4.8e-4490.1Show/hide
Query:  MSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIEN
        MSARGKRKD+EDHA+EGDAPP KT K+D +ETDEIV+CEISKNRRVMVRNWQGKIVVDIREFYVKDGK+MPGKKGISLSLDQWNVLRNHVEEIDKAV EN
Subjt:  MSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIEN

Query:  S
        S
Subjt:  S

A0A6J1EYI2 RNA polymerase II transcriptional coactivator KIWI-like isoform X14.8e-4489.22Show/hide
Query:  MSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIEN
        MSARGKRKD+EDH  EGDAPP KTF++D DETDEIV+CEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHV+EIDKAV EN
Subjt:  MSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIEN

Query:  SV
        S+
Subjt:  SV

A0A6J1HRT2 RNA polymerase II transcriptional coactivator KIWI-like isoform X12.8e-4490.1Show/hide
Query:  MSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIEN
        MSARGKRKD+EDHA+EGDAPP KTFK+D +ETDEIV+CEISKNRRVMVRNWQGKIVVDIREFYVKDGK+MPGKKG SLSLDQWNVLRNHVEEIDKAV EN
Subjt:  MSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIEN

Query:  S
        S
Subjt:  S

A0A6J1IRG1 RNA polymerase II transcriptional coactivator KIWI-like isoform X13.1e-4386.27Show/hide
Query:  MSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIEN
        MSARGKR+D+EDH +EGDAPP KTF++D DETDEIV+CEISKNR+V+VRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHV+EIDKAV EN
Subjt:  MSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIEN

Query:  SV
        S+
Subjt:  SV

SwissProt top hitse value%identityAlignment
O65154 RNA polymerase II transcriptional coactivator KIWI3.8e-3063.55Show/hide
Query:  MSARGKRKDEE----DHATEGDAPPSKTFK--EDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEID
        MS+RGKRKDE+    D  +E  AP  K  K  +D D++D+IV+C ISKNRRV VRNW GKI +DIREFYVKDGK +PGKKGISLS+DQWN LRNH E+I+
Subjt:  MSARGKRKDEE----DHATEGDAPPSKTFK--EDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEID

Query:  KAVIENS
        KA+ + S
Subjt:  KAVIENS

O65155 RNA polymerase II transcriptional coactivator KELP3.6e-1243.33Show/hide
Query:  KDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAV
        K+EED    GD    K  KE  D+ D ++IC +S  RRV ++ ++GK +V IRE+Y KDGK++P  KGISL+ +QW+  + ++  I+ AV
Subjt:  KDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAV

P11031 Activated RNA polymerase II transcriptional coactivator p154.1e-0832.46Show/hide
Query:  EEEMSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIV-------------ICEISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGISLSLDQW
        + E+  + KRK +         P     K+ P ET   +             + +I K R V VR+++GKI++DIRE+++  +G+  PG+KGISL+++QW
Subjt:  EEEMSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIV-------------ICEISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGISLSLDQW

Query:  NVLRNHVEEIDKAV
        + L+  + +ID AV
Subjt:  NVLRNHVEEIDKAV

Q5ZK63 Activated RNA polymerase II transcriptional coactivator p153.1e-0832.04Show/hide
Query:  KKEEEMSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGISLSLDQWNVLRNHVEEID
        +K++    +  +K +   +++G A   ++   D +      + +I K R V VR+++GK+++DIRE+++ ++G+  PG+KGISL+ +QWN L+  + +ID
Subjt:  KKEEEMSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGISLSLDQWNVLRNHVEEID

Query:  KAV
         AV
Subjt:  KAV

Q63396 Activated RNA polymerase II transcriptional coactivator p159.7e-1046.67Show/hide
Query:  EISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAV
        +I K R V VR+++GKI++DIRE+++  +G+  PG+KGISL+++QW+ L+  + +ID AV
Subjt:  EISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAV

Arabidopsis top hitse value%identityAlignment
AT4G10920.1 transcriptional coactivator p15 (PC4) family protein (KELP)2.5e-1343.33Show/hide
Query:  KDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAV
        K+EED    GD    K  KE  D+ D ++IC +S  RRV ++ ++GK +V IRE+Y KDGK++P  KGISL+ +QW+  + ++  I+ AV
Subjt:  KDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAV

AT5G09240.1 ssDNA-binding transcriptional regulator1.5e-2154.13Show/hide
Query:  MSARGKRKDEEDHA------TEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMP--GKKGISLSLDQWNVLRNHVEE
        MS  GKRKDE+  A      +E  APP K  K   DE ++I IC + KNRRV VRN  G+I + IR+F+VKDG  +P   K+GISLSL+QWN LRNH E+
Subjt:  MSARGKRKDEEDHA------TEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMP--GKKGISLSLDQWNVLRNHVEE

Query:  IDKAVIENS
        IDKA+ E S
Subjt:  IDKAVIENS

AT5G09240.2 ssDNA-binding transcriptional regulator4.9e-1743.07Show/hide
Query:  MSARGKRKDEEDHA------TEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMP--GKKGISLSLD-----------
        MS  GKRKDE+  A      +E  APP K  K   DE ++I IC + KNRRV VRN  G+I + IR+F+VKDG  +P   K+GISLSL+           
Subjt:  MSARGKRKDEEDHA------TEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMP--GKKGISLSLD-----------

Query:  -----------------QWNVLRNHVEEIDKAVIENS
                         QWN LRNH E+IDKA+ E S
Subjt:  -----------------QWNVLRNHVEEIDKAVIENS

AT5G09250.1 ssDNA-binding transcriptional regulator2.7e-3163.55Show/hide
Query:  MSARGKRKDEE----DHATEGDAPPSKTFK--EDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEID
        MS+RGKRKDE+    D  +E  AP  K  K  +D D++D+IV+C ISKNRRV VRNW GKI +DIREFYVKDGK +PGKKGISLS+DQWN LRNH E+I+
Subjt:  MSARGKRKDEE----DHATEGDAPPSKTFK--EDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEID

Query:  KAVIENS
        KA+ + S
Subjt:  KAVIENS

AT5G09250.2 ssDNA-binding transcriptional regulator2.1e-2062.96Show/hide
Query:  MSARGKRKDEE----DHATEGDAPPSKTFK--EDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG
        MS+RGKRKDE+    D  +E  AP  K  K  +D D++D+IV+C ISKNRRV VRNW GKI +DIREFYVKDGK +PGKKG
Subjt:  MSARGKRKDEE----DHATEGDAPPSKTFK--EDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAAAAGGAGGAAGAAATGTCTGCAAGAGGAAAGCGAAAGGACGAGGAAGATCACGCAACCGAAGGAGATGCTCCTCCTTCCAAGACATTCAAGGAAGATCCTGA
CGAAACCGATGAAATCGTCATCTGCGAGATTTCAAAGAACCGTAGGGTTATGGTCAGGAACTGGCAAGGAAAGATTGTCGTCGATATTCGTGAGTTTTATGTCAAAGATG
GCAAGCAGATGCCTGGAAAGAAAGGCATCTCGCTATCTTTGGATCAGTGGAACGTTCTCCGAAATCATGTAGAAGAAATTGACAAGGCTGTTATTGAAAACTCGGTATCG
CTCCATAGGATTATTCTGCTTTACGACGTCAAAACTGTGACCTTTTGTACGGCCAATGGGCTTGTTTTTGGTGGAAATGAAGACCAGAGAGCAGCTAGTTTCGCCGCATT
CAAGTTTGGTGTTTGTCCTATTCTCCTTGCCGTTCTCAAGCTATGTTCGGCTATTCGAGCAGCTTCATCCTGCAATTTTGAAATAAGCTCTAACTGCAATGCTAGAGCAA
GCCCTGCTTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGAAAAAGGAGGAAGAAATGTCTGCAAGAGGAAAGCGAAAGGACGAGGAAGATCACGCAACCGAAGGAGATGCTCCTCCTTCCAAGACATTCAAGGAAGATCCTGA
CGAAACCGATGAAATCGTCATCTGCGAGATTTCAAAGAACCGTAGGGTTATGGTCAGGAACTGGCAAGGAAAGATTGTCGTCGATATTCGTGAGTTTTATGTCAAAGATG
GCAAGCAGATGCCTGGAAAGAAAGGCATCTCGCTATCTTTGGATCAGTGGAACGTTCTCCGAAATCATGTAGAAGAAATTGACAAGGCTGTTATTGAAAACTCGGTATCG
CTCCATAGGATTATTCTGCTTTACGACGTCAAAACTGTGACCTTTTGTACGGCCAATGGGCTTGTTTTTGGTGGAAATGAAGACCAGAGAGCAGCTAGTTTCGCCGCATT
CAAGTTTGGTGTTTGTCCTATTCTCCTTGCCGTTCTCAAGCTATGTTCGGCTATTCGAGCAGCTTCATCCTGCAATTTTGAAATAAGCTCTAACTGCAATGCTAGAGCAA
GCCCTGCTTCATAG
Protein sequenceShow/hide protein sequence
MAKKEEEMSARGKRKDEEDHATEGDAPPSKTFKEDPDETDEIVICEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVIENSVS
LHRIILLYDVKTVTFCTANGLVFGGNEDQRAASFAAFKFGVCPILLAVLKLCSAIRAASSCNFEISSNCNARASPAS