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Lsi01G019960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G019960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-CH-type domain-containing protein
Genome locationchr01:26729036..26731971
RNA-Seq ExpressionLsi01G019960
SyntenyLsi01G019960
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU25403.1 hypothetical protein TSUD_70550 [Trifolium subterraneum]3.4e-1388.64Show/hide
Query:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
        V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTH+AHTT
Subjt:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
XP_008442137.1 PREDICTED: uncharacterized protein LOC103486085 isoform X1 [Cucumis melo]1.5e-1390.91Show/hide
Query:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
        V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
Subjt:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
XP_011653898.1 uncharacterized protein LOC101218157 [Cucumis sativus]1.5e-1390.91Show/hide
Query:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
        V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
Subjt:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
XP_022928641.1 uncharacterized protein LOC111435487 [Cucurbita moschata]3.4e-1388.64Show/hide
Query:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
        V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTH+AHTT
Subjt:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
XP_038881492.1 uncharacterized protein LOC120073014 isoform X1 [Benincasa hispida]1.5e-1390.91Show/hide
Query:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
        V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
Subjt:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
TrEMBL top hitse value%identityAlignment
A0A1S3B510 uncharacterized protein LOC103486085 isoform X17.3e-1490.91Show/hide
Query:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
        V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
Subjt:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
A0A1S3E9Y4 uncharacterized protein LOC1015047101.6e-1388.64Show/hide
Query:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
        V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTH+AHTT
Subjt:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
A0A2Z6M5J3 RING-CH-type domain-containing protein1.6e-1388.64Show/hide
Query:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
        V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTH+AHTT
Subjt:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
A0A6J1EKV8 uncharacterized protein LOC1114354871.6e-1388.64Show/hide
Query:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
        V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTH+AHTT
Subjt:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
A0A6J1HRV4 uncharacterized protein LOC1114672211.6e-1388.64Show/hide
Query:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
        V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTH+AHTT
Subjt:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G08750.1 RING/FYVE/PHD zinc finger superfamily protein1.1e-1477.27Show/hide
Query:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
        V + R  VLTRI+YGPARYWAILFVFWFLVFGIWASR+HA+H++
Subjt:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
AT5G08750.2 RING/FYVE/PHD zinc finger superfamily protein1.1e-1477.27Show/hide
Query:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
        V + R  VLTRI+YGPARYWAILFVFWFLVFGIWASR+HA+H++
Subjt:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
AT5G08750.3 RING/FYVE/PHD zinc finger superfamily protein1.1e-1477.27Show/hide
Query:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
        V + R  VLTRI+YGPARYWAILFVFWFLVFGIWASR+HA+H++
Subjt:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
AT5G63780.1 RING/FYVE/PHD zinc finger superfamily protein1.2e-1372.73Show/hide
Query:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
        V + R  VLTRI+YGPARYWAILF+FWFLVFGIWASR++A+H +
Subjt:  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAAGTTAAATGGGAGGAGATTCCCAAAAAGTATTATACTCGCAAAGGATGCTGAAGTTTTAGCAATGCCTTTCAGCCACCTGAATGCTCCTTCCATATTCTACTT
CTTAATGGTTGAAATTCTCAAAACATATTTGCATGAGTTTGCTTTGGTGGTTTTTGATGACATTTTCTTTTCGTTGCAATTTACTGGAGTACAAGAAACACCTGAAGCTA
GTTCTGTAGACTATGCAAGACTGTTTGTGCTTACCAGGATAAAATATGGACCTGCACGATACTGGGCCATTTTGTTCGTCTTTTGGTTCCTGGTGTTTGGTATTTGGGCA
TCAAGGACACACGCTGCTCATACGACGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCAAGTTAAATGGGAGGAGATTCCCAAAAAGTATTATACTCGCAAAGGATGCTGAAGTTTTAGCAATGCCTTTCAGCCACCTGAATGCTCCTTCCATATTCTACTT
CTTAATGGTTGAAATTCTCAAAACATATTTGCATGAGTTTGCTTTGGTGGTTTTTGATGACATTTTCTTTTCGTTGCAATTTACTGGAGTACAAGAAACACCTGAAGCTA
GTTCTGTAGACTATGCAAGACTGTTTGTGCTTACCAGGATAAAATATGGACCTGCACGATACTGGGCCATTTTGTTCGTCTTTTGGTTCCTGGTGTTTGGTATTTGGGCA
TCAAGGACACACGCTGCTCATACGACGTAACTGGGTACATTCTGTACATTCTATTTGGTTGTTTTTCCGTTCTCCACTTCAAGGCGATCTCACAAAATATACAAGTGTTT
GATACTTCTTTAAGGTACTGAAATCATGATATATATCCTGTAGGGTTTTGATTTTATGTTGTATTTTAGGTTGTATGAGTGTAAATTTGAGATTGGGAAAGGTATATAAG
TATCCAGACAAGATACAAGATACCCTTTAGCTGTATTTCATTGACACCAGAGCCGAGTATTTTTTATTATTTGTTAAAAGGATCTTCAATTCTTTTAAAATTTTAGTAAA
TTGTTCTCATTTTTG
Protein sequenceShow/hide protein sequence
MFKLNGRRFPKSIILAKDAEVLAMPFSHLNAPSIFYFLMVEILKTYLHEFALVVFDDIFFSLQFTGVQETPEASSVDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWA
SRTHAAHTT