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Lsi01G019970 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G019970
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionthioredoxin-like 3-1, chloroplastic
Genome locationchr01:26733804..26737439
RNA-Seq ExpressionLsi01G019970
SyntenyLsi01G019970
Gene Ontology termsGO:0009570 - chloroplast stroma (cellular component)
InterPro domainsIPR036249 - Thioredoxin-like superfamily
IPR044253 - Thioredoxin-like 3-1/3-2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595600.1 Thioredoxin-like 3-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.0e-5566.14Show/hide
Query:  MSVLGANSSQILYRQLH--QHQILSN-GKRCFLNTDFG--LLGDQ-------RRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPI
        MSVL A ++QILY ++H  QHQI SN G+RCF+N DFG  L G +       RRREL++  E GFWPDLSRPA+VEMESI+DS+ LDRIL HAQ+LSQP+
Subjt:  MSVLGANSSQILYRQLH--QHQILSN-GKRCFLNTDFG--LLGDQ-------RRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPI

Query:  LIDWFVFLFLSFIPFH------SVPRVFLVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFV
        LIDW        I         +   +  VKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMI KF+
Subjt:  LIDWFVFLFLSFIPFH------SVPRVFLVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFV

XP_004146393.3 thioredoxin-like 3-1, chloroplastic isoform X1 [Cucumis sativus]5.7e-6275.42Show/hide
Query:  MSVLGANSSQILYRQLHQHQILSNGKRC-FLNTDFGLLGDQRRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILIDWFVFLFLS
        MSVLGA++S ILY  LHQH  L+N KRC FL+TDF   GD RRRELRIKAE GFWPDLSRPA VEMESIDDSD LDRILIHAQ LSQPILIDW       
Subjt:  MSVLGANSSQILYRQLHQHQILSNGKRC-FLNTDFGLLGDQRRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILIDWFVFLFLS

Query:  FIPFH------SVPRVFLVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFVS
         I         +   V   KFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKF S
Subjt:  FIPFH------SVPRVFLVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFVS

XP_008442136.1 PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis melo]1.1e-6579.33Show/hide
Query:  MSVLGANSSQILYRQLHQHQILSNGKRC-FLNTDFGLLGDQRRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILIDWFVFLFLS
        M VLGA+SS ILY QLHQHQ LSNGKRC FLNTDF   GD RRRELRIKAE GFWPDLSRPA VEMESIDDSD LDRILIHAQQLSQPILIDW       
Subjt:  MSVLGANSSQILYRQLHQHQILSNGKRC-FLNTDFGLLGDQRRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILIDWFVFLFLS

Query:  FIPFH------SVPRVFLVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFVS
         I         +   V  VKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKF S
Subjt:  FIPFH------SVPRVFLVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFVS

XP_022966464.1 thioredoxin-like 3-1, chloroplastic [Cucurbita maxima]8.0e-5666.14Show/hide
Query:  MSVLGANSSQILYRQLH--QHQILSNG-KRCFLNTDFGLL------GDQ---RRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPI
        MSVL A+++QILY ++H  QHQI SNG +RCF+N DFG +      G+Q   RRRE R+  E GFWPDLSRPA+VEMESI+DS+ LDRIL HAQ+LSQP+
Subjt:  MSVLGANSSQILYRQLH--QHQILSNG-KRCFLNTDFGLL------GDQ---RRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPI

Query:  LIDWFVFLFLSFIPFH------SVPRVFLVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFV
        LIDW        I             +  VKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMI KF+
Subjt:  LIDWFVFLFLSFIPFH------SVPRVFLVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFV

XP_038883417.1 thioredoxin-like 3-1, chloroplastic isoform X1 [Benincasa hispida]2.2e-7484.83Show/hide
Query:  MSVLGANSSQILYRQLHQHQILSNGKRCFLNTDFGLLGDQRRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILIDWFVFLFLSF
        MSVLGANSSQILYRQLHQHQILS GKRCFLNTDFGLLGDQRRRELRIKAE GFWPDLSRPA VEMESIDDSDHLDRILIH+QQLSQPILIDW        
Subjt:  MSVLGANSSQILYRQLHQHQILSNGKRCFLNTDFGLLGDQRRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILIDWFVFLFLSF

Query:  IPFH------SVPRVFLVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFVS
        I         +   V  VKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFVS
Subjt:  IPFH------SVPRVFLVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFVS

TrEMBL top hitse value%identityAlignment
A0A0A0KZ53 Thioredoxin domain-containing protein2.8e-6275.42Show/hide
Query:  MSVLGANSSQILYRQLHQHQILSNGKRC-FLNTDFGLLGDQRRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILIDWFVFLFLS
        MSVLGA++S ILY  LHQH  L+N KRC FL+TDF   GD RRRELRIKAE GFWPDLSRPA VEMESIDDSD LDRILIHAQ LSQPILIDW       
Subjt:  MSVLGANSSQILYRQLHQHQILSNGKRC-FLNTDFGLLGDQRRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILIDWFVFLFLS

Query:  FIPFH------SVPRVFLVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFVS
         I         +   V   KFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKF S
Subjt:  FIPFH------SVPRVFLVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFVS

A0A1S3B504 thioredoxin-like 3-1, chloroplastic5.4e-6679.33Show/hide
Query:  MSVLGANSSQILYRQLHQHQILSNGKRC-FLNTDFGLLGDQRRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILIDWFVFLFLS
        M VLGA+SS ILY QLHQHQ LSNGKRC FLNTDF   GD RRRELRIKAE GFWPDLSRPA VEMESIDDSD LDRILIHAQQLSQPILIDW       
Subjt:  MSVLGANSSQILYRQLHQHQILSNGKRC-FLNTDFGLLGDQRRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILIDWFVFLFLS

Query:  FIPFH------SVPRVFLVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFVS
         I         +   V  VKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKF S
Subjt:  FIPFH------SVPRVFLVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFVS

A0A6J1E1K1 thioredoxin-like 3-1, chloroplastic3.9e-4863.83Show/hide
Query:  MSVLGANSSQILYRQLHQ---HQILS--NGKRCFLNTD-----FGLLGDQRRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILI
        MS+L A SSQI+YR++H     QI S  +G  CF+NT+     F      RRRELR  AE GFWPDLSRPA  EM  I DSDHLDRIL+ A+  SQP+LI
Subjt:  MSVLGANSSQILYRQLHQ---HQILS--NGKRCFLNTD-----FGLLGDQRRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILI

Query:  DWFVFLFLSFIPFH------SVPRVFLVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFVS
        DW        I         +   V   KFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFVS
Subjt:  DWFVFLFLSFIPFH------SVPRVFLVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFVS

A0A6J1EDU4 thioredoxin-like 3-1, chloroplastic2.5e-5566.14Show/hide
Query:  MSVLGANSSQILYRQLH--QHQILSN-GKRCFLNTDFG--LLGDQ-------RRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPI
        MSVL A ++QILY + H  QHQI SN G+RCF+N DFG  L G +       RRREL++  E GFWPDLSRPA+VEMESI+DS+ LDRIL HAQ+LSQP+
Subjt:  MSVLGANSSQILYRQLH--QHQILSN-GKRCFLNTDFG--LLGDQ-------RRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPI

Query:  LIDWFVFLFLSFIPFH------SVPRVFLVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFV
        LIDW        I         +   +  VKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMI KF+
Subjt:  LIDWFVFLFLSFIPFH------SVPRVFLVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFV

A0A6J1HTV8 thioredoxin-like 3-1, chloroplastic3.9e-5666.14Show/hide
Query:  MSVLGANSSQILYRQLH--QHQILSNG-KRCFLNTDFGLL------GDQ---RRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPI
        MSVL A+++QILY ++H  QHQI SNG +RCF+N DFG +      G+Q   RRRE R+  E GFWPDLSRPA+VEMESI+DS+ LDRIL HAQ+LSQP+
Subjt:  MSVLGANSSQILYRQLH--QHQILSNG-KRCFLNTDFGLL------GDQ---RRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPI

Query:  LIDWFVFLFLSFIPFH------SVPRVFLVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFV
        LIDW        I             +  VKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMI KF+
Subjt:  LIDWFVFLFLSFIPFH------SVPRVFLVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFV

SwissProt top hitse value%identityAlignment
Q6Z7L3 Thioredoxin-like 3-1, chloroplastic1.3e-2955.63Show/hide
Query:  GDQRRREL---RIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILIDWFVFLFLSFIPFHSVPRVFL-------VKFYYVDVNKVPQSLV
        G  RRRE     ++AE  FW D+S+P  VEME ID  + LD  L  + +  QPI+IDW        I  +  PR+         V+FY+VDVNKVPQ++V
Subjt:  GDQRRREL---RIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILIDWFVFLFLSFIPFHSVPRVFL-------VKFYYVDVNKVPQSLV

Query:  KRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQK
        KRGNI+KMPTIQLWKDGE  AEVIGGHKAWLV++EVREMIQK
Subjt:  KRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQK

Q8VZT6 Thioredoxin-like 3-2, chloroplastic1.1e-2041.5Show/hide
Query:  TDFGLLGDQRRRELRIKAEDGFWPDL-SRPALVEMESIDDSDHLDRILIHAQQLSQPILIDWF-------VFL--FLSFIPFHSVPRVFLVKFYYVDVNK
        TD   L  +R R + I+ +DG   +L   P  VE+  I    H D+++  AQ+L + ++I W        ++L   L  +     PR   ++FY+VDVN 
Subjt:  TDFGLLGDQRRRELRIKAEDGFWPDL-SRPALVEMESIDDSDHLDRILIHAQQLSQPILIDWF-------VFL--FLSFIPFHSVPRVFLVKFYYVDVNK

Query:  VPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQ
        VP  LV R  ++KMPTIQLW+DG+ +AEVIGGHKA  V+ EVREMI+
Subjt:  VPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQ

Q9FG36 Thioredoxin-like 3-1, chloroplastic8.1e-3547.34Show/hide
Query:  ANSSQILYRQLH--------QHQILSNGKRC------FLNTDFGLLGDQRRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILID
        A++ Q+L RQ H        + + L+  K+C      + N   G       +E R+KA   FW ++++P  +EME I++ + LD +L HA+QLSQPI+I+
Subjt:  ANSSQILYRQLH--------QHQILSNGKRC------FLNTDFGLLGDQRRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILID

Query:  WFVFLFLSFIPFHSVPRVFLV--------KFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFV
        W        I  +  P++  +        KFYYVDVNKVPQ+LVKRGNISKMPTIQLWK+ EMK EVIGGHK WLVIEEVRE+I KFV
Subjt:  WFVFLFLSFIPFHSVPRVFLV--------KFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFV

Arabidopsis top hitse value%identityAlignment
AT5G04260.1 WCRKC thioredoxin 28.0e-2241.5Show/hide
Query:  TDFGLLGDQRRRELRIKAEDGFWPDL-SRPALVEMESIDDSDHLDRILIHAQQLSQPILIDWF-------VFL--FLSFIPFHSVPRVFLVKFYYVDVNK
        TD   L  +R R + I+ +DG   +L   P  VE+  I    H D+++  AQ+L + ++I W        ++L   L  +     PR   ++FY+VDVN 
Subjt:  TDFGLLGDQRRRELRIKAEDGFWPDL-SRPALVEMESIDDSDHLDRILIHAQQLSQPILIDWF-------VFL--FLSFIPFHSVPRVFLVKFYYVDVNK

Query:  VPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQ
        VP  LV R  ++KMPTIQLW+DG+ +AEVIGGHKA  V+ EVREMI+
Subjt:  VPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQ

AT5G06690.1 WCRKC thioredoxin 15.7e-3647.34Show/hide
Query:  ANSSQILYRQLH--------QHQILSNGKRC------FLNTDFGLLGDQRRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILID
        A++ Q+L RQ H        + + L+  K+C      + N   G       +E R+KA   FW ++++P  +EME I++ + LD +L HA+QLSQPI+I+
Subjt:  ANSSQILYRQLH--------QHQILSNGKRC------FLNTDFGLLGDQRRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILID

Query:  WFVFLFLSFIPFHSVPRVFLV--------KFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFV
        W        I  +  P++  +        KFYYVDVNKVPQ+LVKRGNISKMPTIQLWK+ EMK EVIGGHK WLVIEEVRE+I KFV
Subjt:  WFVFLFLSFIPFHSVPRVFLV--------KFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFV

AT5G06690.2 WCRKC thioredoxin 16.6e-1638Show/hide
Query:  ANSSQILYRQLH--------QHQILSNGKRC------FLNTDFGLLGDQRRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILID
        A++ Q+L RQ H        + + L+  K+C      + N   G       +E R+KA   FW ++++P  +EME I++ + LD +L HA+QLSQPI+I+
Subjt:  ANSSQILYRQLH--------QHQILSNGKRC------FLNTDFGLLGDQRRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILID

Query:  WFVFLFLSFIPFHSVPRVFLV--------KFYYVDVNKVPQSLVKRGNIS
        W        I  +  P++  +        KFYYVDVNKVPQ+LVKRGNIS
Subjt:  WFVFLFLSFIPFHSVPRVFLV--------KFYYVDVNKVPQSLVKRGNIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTTTTGGGTGCAAATAGTTCTCAGATTTTGTACAGACAACTTCACCAACACCAAATTCTAAGCAATGGGAAGCGTTGTTTTCTCAATACAGATTTTGGGCTTCT
TGGAGATCAGCGACGGAGGGAGCTCAGAATCAAGGCGGAGGATGGCTTTTGGCCGGACTTGTCCCGTCCGGCGCTGGTGGAGATGGAGTCCATTGACGATTCCGATCACC
TCGATCGGATTTTGATTCACGCCCAACAACTTTCTCAGCCAATTCTTATTGATTGGTTCGTATTTCTCTTCTTATCTTTCATTCCCTTCCATTCCGTACCAAGGGTTTTT
CTAGTAAAATTCTACTATGTAGATGTGAATAAGGTCCCTCAATCTTTAGTAAAACGTGGAAACATCTCTAAAATGCCAACAATTCAGCTTTGGAAAGATGGAGAAATGAA
AGCAGAAGTAATTGGAGGGCACAAAGCTTGGCTTGTGATTGAAGAAGTTAGAGAAATGATCCAAAAGTTTGTATCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTTTTGGGTGCAAATAGTTCTCAGATTTTGTACAGACAACTTCACCAACACCAAATTCTAAGCAATGGGAAGCGTTGTTTTCTCAATACAGATTTTGGGCTTCT
TGGAGATCAGCGACGGAGGGAGCTCAGAATCAAGGCGGAGGATGGCTTTTGGCCGGACTTGTCCCGTCCGGCGCTGGTGGAGATGGAGTCCATTGACGATTCCGATCACC
TCGATCGGATTTTGATTCACGCCCAACAACTTTCTCAGCCAATTCTTATTGATTGGTTCGTATTTCTCTTCTTATCTTTCATTCCCTTCCATTCCGTACCAAGGGTTTTT
CTAGTAAAATTCTACTATGTAGATGTGAATAAGGTCCCTCAATCTTTAGTAAAACGTGGAAACATCTCTAAAATGCCAACAATTCAGCTTTGGAAAGATGGAGAAATGAA
AGCAGAAGTAATTGGAGGGCACAAAGCTTGGCTTGTGATTGAAGAAGTTAGAGAAATGATCCAAAAGTTTGTATCATAATTCAGTTTTTTTTAATTAAAAAATAAATAAA
TAGAGACAAACTTTGTTGATTATTAGTTCATATTCAACCTTCCCTTAGCTC
Protein sequenceShow/hide protein sequence
MSVLGANSSQILYRQLHQHQILSNGKRCFLNTDFGLLGDQRRRELRIKAEDGFWPDLSRPALVEMESIDDSDHLDRILIHAQQLSQPILIDWFVFLFLSFIPFHSVPRVF
LVKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFVS