; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G019980 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G019980
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSeed maturation protein
Genome locationchr01:26778593..26779523
RNA-Seq ExpressionLsi01G019980
SyntenyLsi01G019980
Gene Ontology termsGO:0006970 - response to osmotic stress (biological process)
GO:0009409 - response to cold (biological process)
GO:0009414 - response to water deprivation (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
InterPro domainsIPR005513 - Late embryogenesis abundant protein, LEA_1 subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN54793.1 hypothetical protein Csa_011934 [Cucumis sativus]5.5e-6586.86Show/hide
Query:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTAT
        MQSGKKA+ESMKESAANVAASAKAGMDKTKATVQEKMEKVTA DPLAKEIAEEKK+AKIHEAELNKQEAR+HNAAVRQAAT A   ATHGTHPTTH TAT
Subjt:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTAT

Query:  YSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIG---GTGTGTGTGGGYS
        YSTTGAHG+TTGTQQ SALPGHGTGQPTG VTEGVVGAHPIGTETGT RT TAHNP  G   G GTGT TGG Y+
Subjt:  YSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIG---GTGTGTGTGGGYS

XP_004146409.2 18 kDa seed maturation protein [Cucumis sativus]2.7e-6482.26Show/hide
Query:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAAT-----------GTATH
        MQSGKKA+ESMKESAANVAASAKAGMDKTKATVQEKMEKVTA DPLAKEIAEEKK+AKIHEAELNKQEAR+HNAAVRQAAT A             TATH
Subjt:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAAT-----------GTATH

Query:  GTHPTTHPTATYSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIG---GTGTGTGTGGGYS
        GTHPTTH TATYSTTGAHG+TTGTQQ SALPGHGTGQPTG VTEGVVGAHPIGTETGT RT TAHNP  G   G GTGT TGG Y+
Subjt:  GTHPTTHPTATYSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIG---GTGTGTGTGGGYS

XP_008442129.1 PREDICTED: 18 kDa seed maturation protein [Cucumis melo]2.0e-6283.71Show/hide
Query:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTAT
        MQSGKKAMES+KESAANVAASAKAGMDKTKATVQEKMEKVTA DPLAKEIAEEKK+AKIHEAELNKQEAR+HNAAVRQAAT    T THGTHPTTH TAT
Subjt:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTAT

Query:  YSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGT---GTGT---GTGGGYS
        +STTGAHG+TTGT QMSALPGHGTGQPTG VTEGVVG HPIGT TGT RT TAHNP  GG    GTGT   GTGG Y+
Subjt:  YSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGT---GTGT---GTGGGYS

XP_022924969.1 late embryogenesis abundant protein 46 [Cucurbita moschata]2.6e-6283.91Show/hide
Query:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTAT
        MQSGK AMESMKESAANVAASAKAGMDKTKATVQEKMEKVTA DPLAKEIAEEKKQAKIHEAEL+KQEAREHNAA++QA TA   TATHG HPTTH TAT
Subjt:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTAT

Query:  YSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGTGTGT--GTGGGYS
        YSTTGA G+TTGTQQMSA+PGHGTGQPTG+VTEGVVG HPIG +TGT RT TAHNP +GG G  T   TGGGYS
Subjt:  YSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGTGTGT--GTGGGYS

XP_038883398.1 11 kDa late embryogenesis abundant protein [Benincasa hispida]8.2e-6988.7Show/hide
Query:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTAT
        MQSGKKA+ESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAA G  THGTHPTTHPTAT
Subjt:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTAT

Query:  YSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIG-----GTGTGTGTGGGYS
        YST+GAHG+TTGTQQMSALPGHGTGQPTG   EGVVGAHPIGTETGT RT TAHNP +G     GT TGTGTGGG+S
Subjt:  YSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIG-----GTGTGTGTGGGYS

TrEMBL top hitse value%identityAlignment
A0A0A0KZ59 Uncharacterized protein2.7e-6586.86Show/hide
Query:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTAT
        MQSGKKA+ESMKESAANVAASAKAGMDKTKATVQEKMEKVTA DPLAKEIAEEKK+AKIHEAELNKQEAR+HNAAVRQAAT A   ATHGTHPTTH TAT
Subjt:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTAT

Query:  YSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIG---GTGTGTGTGGGYS
        YSTTGAHG+TTGTQQ SALPGHGTGQPTG VTEGVVGAHPIGTETGT RT TAHNP  G   G GTGT TGG Y+
Subjt:  YSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIG---GTGTGTGTGGGYS

A0A1S3B5R4 18 kDa seed maturation protein9.5e-6383.71Show/hide
Query:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTAT
        MQSGKKAMES+KESAANVAASAKAGMDKTKATVQEKMEKVTA DPLAKEIAEEKK+AKIHEAELNKQEAR+HNAAVRQAAT    T THGTHPTTH TAT
Subjt:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTAT

Query:  YSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGT---GTGT---GTGGGYS
        +STTGAHG+TTGT QMSALPGHGTGQPTG VTEGVVG HPIGT TGT RT TAHNP  GG    GTGT   GTGG Y+
Subjt:  YSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGT---GTGT---GTGGGYS

A0A5D3C2B4 18 kDa seed maturation protein9.5e-6383.71Show/hide
Query:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTAT
        MQSGKKAMES+KESAANVAASAKAGMDKTKATVQEKMEKVTA DPLAKEIAEEKK+AKIHEAELNKQEAR+HNAAVRQAAT    T THGTHPTTH TAT
Subjt:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTAT

Query:  YSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGT---GTGT---GTGGGYS
        +STTGAHG+TTGT QMSALPGHGTGQPTG VTEGVVG HPIGT TGT RT TAHNP  GG    GTGT   GTGG Y+
Subjt:  YSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGT---GTGT---GTGGGYS

A0A6J1EAR4 late embryogenesis abundant protein 461.2e-6283.91Show/hide
Query:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTAT
        MQSGK AMESMKESAANVAASAKAGMDKTKATVQEKMEKVTA DPLAKEIAEEKKQAKIHEAEL+KQEAREHNAA++QA TA   TATHG HPTTH TAT
Subjt:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTAT

Query:  YSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGTGTGT--GTGGGYS
        YSTTGA G+TTGTQQMSA+PGHGTGQPTG+VTEGVVG HPIG +TGT RT TAHNP +GG G  T   TGGGYS
Subjt:  YSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGTGTGT--GTGGGYS

A0A6J1HN24 late embryogenesis abundant protein 464.0e-6183.24Show/hide
Query:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTAT
        MQSGK AMESMKESAANVAASAKAGMDKTKATVQEKMEKVTA DPLAKEIAEEKKQAKIHEAEL+KQEAR+HNAA++QA TA   TATHG HPTTH TAT
Subjt:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTAT

Query:  YSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRI-GGTGTGTGTGGGYS
        YSTTGA G+TTGTQQMSA+PGHGTGQPT RVTEGVVG HPIG +TGT RT TAHNP + GG  T   TGGGYS
Subjt:  YSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRI-GGTGTGTGTGGGYS

SwissProt top hitse value%identityAlignment
P09441 Late embryogenesis abundant protein D-1136.0e-0636.69Show/hide
Query:  MESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTATYS--TTG
        M+SMK++    AASAKAGM+K KA++QEK++++   DP  KE+A E+K+ +  +AEL KQEAR HNA          G        T + TA Y+   TG
Subjt:  MESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTATYS--TTG

Query:  AHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTET----GTERTATAHNPRIGGTGTGTGTGGG
         +G  TG       P  G+G  TGR  +  + +   G +T    GT       N      GT   T GG
Subjt:  AHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTET----GTERTATAHNPRIGGTGTGTGTGGG

P46515 11 kDa late embryogenesis abundant protein8.6e-2159.29Show/hide
Query:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTAT
        MQSGK A  S KE+AANVAASAKAGM+KTKA++QEK EK+TAHDP+ KE+A EKK+ + HEAE  KQ A+EHNAA +Q  T   GT TH          +
Subjt:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTAT

Query:  YSTTGAHGHTTGT
        Y+TT   GH TGT
Subjt:  YSTTGAHGHTTGT

Q00747 Protein LE257.6e-0945.26Show/hide
Query:  ESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTATYSTTGAH
        ++  + A++AKAGM+KTKA VQEK E++T  DPL KE+A EKK+ ++  AE+ K++A+  +AA +Q A A TGT T G          Y  TG H
Subjt:  ESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTATYSTTGAH

Q01417 18 kDa seed maturation protein1.2e-4163.01Show/hide
Query:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHP--TTHPT
        MQ GKKA ES+KE+A N+ ASAKAGM+KTKATVQEK E++TA DP+ KE+A +KK+AK+++AEL+KQ AR+HN A +Q+AT A G   HG H   T   T
Subjt:  MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHP--TTHPT

Query:  ATYSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGG--TGTGTGTGG
        ATYSTTG +G   G  Q SA+PGHGTGQPTG VTEGVVG+HPIGT  G   TATAHN R GG     G GTGG
Subjt:  ATYSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGG--TGTGTGTGG

Q9FG31 Late embryogenesis abundant protein 461.2e-3558.43Show/hide
Query:  MESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTATYSTTGAH
        M+SMKE+A+N+AASAK+GMDKTKAT++EK EK+   DP+ K++A + K+ KI++AE+ K+E R+HNAA+++AA A TG            TAT+STTG  
Subjt:  MESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTATYSTTGAH

Query:  GHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGTG-TGTGTGGGYS
        GH TGT QMSALPGHGTGQ T RV EG     PIG  TGT RT TAHN  +GG G TG GTGGGY+
Subjt:  GHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGTG-TGTGTGGGYS

Arabidopsis top hitse value%identityAlignment
AT5G06760.1 Late Embryogenesis Abundant 4-58.8e-3758.43Show/hide
Query:  MESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTATYSTTGAH
        M+SMKE+A+N+AASAK+GMDKTKAT++EK EK+   DP+ K++A + K+ KI++AE+ K+E R+HNAA+++AA A TG            TAT+STTG  
Subjt:  MESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTATYSTTGAH

Query:  GHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGTG-TGTGTGGGYS
        GH TGT QMSALPGHGTGQ T RV EG     PIG  TGT RT TAHN  +GG G TG GTGGGY+
Subjt:  GHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGTG-TGTGTGGGYS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTCAGGAAAGAAGGCAATGGAATCCATGAAGGAATCGGCTGCAAATGTTGCAGCCTCCGCCAAGGCCGGCATGGACAAGACTAAAGCCACTGTGCAAGAGAAGAT
GGAGAAGGTAACAGCTCATGACCCATTGGCAAAAGAAATCGCAGAGGAGAAGAAACAAGCAAAGATCCACGAGGCAGAGCTCAACAAACAGGAGGCGCGTGAGCACAACG
CCGCCGTGAGACAGGCGGCTACGGCAGCCACAGGCACAGCCACACATGGGACACACCCGACAACTCACCCAACCGCCACATACTCCACCACTGGAGCCCATGGCCACACC
ACTGGGACCCAGCAGATGTCCGCTCTGCCTGGGCACGGCACTGGCCAACCAACCGGCCGTGTGACCGAGGGCGTCGTTGGCGCGCACCCGATCGGAACGGAGACTGGCAC
TGAACGGACCGCAACAGCCCACAACCCTCGCATTGGTGGCACGGGCACCGGCACGGGCACCGGTGGTGGCTATAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCTCCTGATCATATCATAAACTTAAAAGTGAAAATTAAGAAATAGAAATGCAGTCAGGAAAGAAGGCAATGGAATCCATGAAGGAATCGGCTGCAAATGTTGCAGC
CTCCGCCAAGGCCGGCATGGACAAGACTAAAGCCACTGTGCAAGAGAAGATGGAGAAGGTAACAGCTCATGACCCATTGGCAAAAGAAATCGCAGAGGAGAAGAAACAAG
CAAAGATCCACGAGGCAGAGCTCAACAAACAGGAGGCGCGTGAGCACAACGCCGCCGTGAGACAGGCGGCTACGGCAGCCACAGGCACAGCCACACATGGGACACACCCG
ACAACTCACCCAACCGCCACATACTCCACCACTGGAGCCCATGGCCACACCACTGGGACCCAGCAGATGTCCGCTCTGCCTGGGCACGGCACTGGCCAACCAACCGGCCG
TGTGACCGAGGGCGTCGTTGGCGCGCACCCGATCGGAACGGAGACTGGCACTGAACGGACCGCAACAGCCCACAACCCTCGCATTGGTGGCACGGGCACCGGCACGGGCA
CCGGTGGTGGCTATAGTTAAGATGGGGATGTTGTTACTCTCTCTCGATATATATTATTATAAGTGGACTCTTGTTGTTTTAATCTTGAAGTCCAATGTGTTGTATTTGGT
TTTAGGGTGGTTTTCATATTTCGTATGGTTGTTTGGTAATTTTATCTTTTGCACTTAGCCTTATGAAAGTGCTTTGTCAAGTGATGAATAAAACCTGTATGTAGTGTTGC
CT
Protein sequenceShow/hide protein sequence
MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTATYSTTGAHGHT
TGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGTGTGTGTGGGYS