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Lsi01G020120 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G020120
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr01:27470067..27480237
RNA-Seq ExpressionLsi01G020120
SyntenyLsi01G020120
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647791.1 hypothetical protein Csa_004224 [Cucumis sativus]4.1e-3291.03Show/hide
Query:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIGP----LFSSS
        MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIG     +FSS+
Subjt:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIGP----LFSSS

KAG7027560.1 hypothetical protein SDJN02_11574 [Cucurbita argyrosperma subsp. argyrosperma]1.5e-3184.34Show/hide
Query:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIGPLFSSSLGLVFRQSC
        MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFN+VMPVVQRSVKGPMWLHFLIG + +  L +V   +C
Subjt:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIGPLFSSSLGLVFRQSC

XP_011658376.1 uncharacterized protein LOC105435977 isoform X1 [Cucumis sativus]4.1e-3291.03Show/hide
Query:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIGP----LFSSS
        MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIG     +FSS+
Subjt:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIGP----LFSSS

XP_031744138.1 uncharacterized protein LOC105435977 isoform X2 [Cucumis sativus]4.1e-3291.03Show/hide
Query:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIGP----LFSSS
        MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIG     +FSS+
Subjt:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIGP----LFSSS

XP_038882424.1 uncharacterized protein LOC120073695 [Benincasa hispida]2.0e-3198.53Show/hide
Query:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIG
        MRCQHCAGPLSKDMETSAWT PPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIG
Subjt:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIG

TrEMBL top hitse value%identityAlignment
A0A1S4E0V5 uncharacterized protein LOC1034959681.3e-3198.53Show/hide
Query:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIG
        MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFN VMPVVQRSVKGPMWLHFLIG
Subjt:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIG

A0A6J1D6Q7 uncharacterized protein LOC111018136 isoform X23.7e-3195.59Show/hide
Query:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIG
        MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFN+VMP+V+RSVKGPMWLHFLIG
Subjt:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIG

A0A6J1D7Q1 uncharacterized protein LOC111018136 isoform X13.7e-3195.59Show/hide
Query:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIG
        MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFN+VMP+V+RSVKGPMWLHFLIG
Subjt:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIG

A0A6J1EAN3 uncharacterized protein LOC1114323929.8e-3298.53Show/hide
Query:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIG
        MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFN+VMPVVQRSVKGPMWLHFLIG
Subjt:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIG

A0A6J1HN28 uncharacterized protein LOC1114661172.8e-3197.06Show/hide
Query:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIG
        +RCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFN+VMPVVQRSVKGPMWLHFLIG
Subjt:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G41945.1 unknown protein5.2e-0935.8Show/hide
Query:  RCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIGP---LFSSSLGLVF
        RC  C   L+ + E   WTI P++ D+ ++ GS +GG  SA + FN  +P +Q    G   L FL+G    L  S +G  F
Subjt:  RCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIGP---LFSSSLGLVF

AT2G41945.2 unknown protein5.2e-0935.8Show/hide
Query:  RCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIGP---LFSSSLGLVF
        RC  C   L+ + E   WTI P++ D+ ++ GS +GG  SA + FN  +P +Q    G   L FL+G    L  S +G  F
Subjt:  RCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIGP---LFSSSLGLVF

AT2G41945.3 unknown protein1.0e-0935.71Show/hide
Query:  RCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIGP---LFSSSLGLVFRQS
        RC  C   L+ + E   WTI P++ D+ ++ GS +GG  SA + FN  +P +Q    G   L FL+G    L  S +G  F +S
Subjt:  RCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIGP---LFSSSLGLVFRQS

AT3G04040.1 unknown protein4.2e-2773.13Show/hide
Query:  RCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIG
        RC HCAGPL+K++ET+ WT+ P IRDSFSMIGSAVGGTASAF GF++VMP+V++ +KGPMWLHFL+G
Subjt:  RCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIG

AT5G18250.1 unknown protein2.5e-2772.06Show/hide
Query:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIG
        +RC HCAGPL++++ETS WT+ P IRDSFSMIGSAVGGTASAF GFN+ MP+V++ +KGPMWLHFL+G
Subjt:  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATGTCAACACTGTGCGGGTCCTCTTTCAAAGGATATGGAAACAAGTGCTTGGACAATTCCTCCTCTTATTAGGGATAGTTTCTCTATGATTGGCTCTGCTGTTGG
TGGTACTGCTAGTGCTTTCTATGGATTTAACAATGTGATGCCTGTTGTTCAGAGATCAGTGAAAGGGCCAATGTGGTTGCATTTTCTTATTGGTCCGTTGTTTTCTTCTT
CTTTGGGTTTGGTTTTTCGTCAATCATGCTTGTGGGCTCTTCGTAATTCTCAAGTTCAACCTTGGAAGCTTTCTTCTATTTGTTTCGGGCTTGATCGAGTTAAAGTCTTC
TGGCTCCTCCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGATGTCAACACTGTGCGGGTCCTCTTTCAAAGGATATGGAAACAAGTGCTTGGACAATTCCTCCTCTTATTAGGGATAGTTTCTCTATGATTGGCTCTGCTGTTGG
TGGTACTGCTAGTGCTTTCTATGGATTTAACAATGTGATGCCTGTTGTTCAGAGATCAGTGAAAGGGCCAATGTGGTTGCATTTTCTTATTGGTCCGTTGTTTTCTTCTT
CTTTGGGTTTGGTTTTTCGTCAATCATGCTTGTGGGCTCTTCGTAATTCTCAAGTTCAACCTTGGAAGCTTTCTTCTATTTGTTTCGGGCTTGATCGAGTTAAAGTCTTC
TGGCTCCTCCTGTGATCGTATTTTCTTCAGCCTGTGCAGGAATGACAGGTGGTGCTGTTCCAGCTTTGGCGCAACTCGTTGCCTCATCTTATCATTCGGCTGTGTCTCCT
TTGTTAACATTGTCTTCAAAAAATGATAAGGCTTAGAATTCAAGATCTTCTTCTACCTTGTAATGGTAATGTATATGGTGGTGATTCTTATAGTATAGGTTTATATATAC
ATAGCTTATATTTTGCTCGAGGATAAGACGATTTTTATTTATTTATTTACTTTTT
Protein sequenceShow/hide protein sequence
MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNNVMPVVQRSVKGPMWLHFLIGPLFSSSLGLVFRQSCLWALRNSQVQPWKLSSICFGLDRVKVF
WLLL