; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G020140 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G020140
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription elongation factor (TFIIS) family protein
Genome locationchr01:27510061..27517914
RNA-Seq ExpressionLsi01G020140
SyntenyLsi01G020140
Gene Ontology termsGO:0006289 - nucleotide-excision repair (biological process)
GO:0006351 - transcription, DNA-templated (biological process)
GO:0000439 - transcription factor TFIIH core complex (cellular component)
InterPro domainsIPR003617 - Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
IPR017923 - Transcription factor IIS, N-terminal
IPR035441 - TFIIS/LEDGF domain superfamily
IPR044790 - Mediator of RNA polymerase II transcription subunit 26c-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647472.1 hypothetical protein Csa_003517 [Cucumis sativus]2.2e-10896.63Show/hide
Query:  MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEG
        MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC+TDRNHDGRSNGCEIKQ SGEVK ASPST QFVVVEG
Subjt:  MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEG

Query:  DDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ
        DDDG DPYAGLFDDEQKKVLEIKEQLEIP QPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKH SNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ
Subjt:  DDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ

Query:  TATLLADG
        TATLLADG
Subjt:  TATLLADG

XP_004141981.1 probable mediator of RNA polymerase II transcription subunit 26c [Cucumis sativus]2.2e-10896.63Show/hide
Query:  MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEG
        MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC+TDRNHDGRSNGCEIKQ SGEVK ASPST QFVVVEG
Subjt:  MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEG

Query:  DDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ
        DDDG DPYAGLFDDEQKKVLEIKEQLEIP QPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKH SNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ
Subjt:  DDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ

Query:  TATLLADG
        TATLLADG
Subjt:  TATLLADG

XP_008440997.1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Cucumis melo]7.9e-11198.08Show/hide
Query:  MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEG
        MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC+TDRNHDGRSNGCEIKQ SGEVKGASPST QFVVVEG
Subjt:  MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEG

Query:  DDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ
        DDDG DPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ
Subjt:  DDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ

Query:  TATLLADG
        TATLLADG
Subjt:  TATLLADG

XP_022977926.1 probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita maxima]1.7e-10594.23Show/hide
Query:  MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEG
        MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPP+RCRNC+TDR +DGRSNGCEIKQS  E K ASPST QFVVVEG
Subjt:  MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEG

Query:  DDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ
        DD+GVDPY GLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ
Subjt:  DDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ

Query:  TATLLADG
        TATL+ADG
Subjt:  TATLLADG

XP_038882890.1 probable mediator of RNA polymerase II transcription subunit 26c [Benincasa hispida]7.4e-10996.15Show/hide
Query:  MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEG
        MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC+TDRNHDGRSNGCEIKQS GEVKGASPST QFV V+G
Subjt:  MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEG

Query:  DDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ
        DDDGVDP+ GLFDDEQKKVLEIKEQLEIPHQPED LVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ
Subjt:  DDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ

Query:  TATLLADG
        TATLLADG
Subjt:  TATLLADG

TrEMBL top hitse value%identityAlignment
A0A0A0KHV9 TFIIS N-terminal domain-containing protein1.0e-10896.63Show/hide
Query:  MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEG
        MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC+TDRNHDGRSNGCEIKQ SGEVK ASPST QFVVVEG
Subjt:  MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEG

Query:  DDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ
        DDDG DPYAGLFDDEQKKVLEIKEQLEIP QPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKH SNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ
Subjt:  DDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ

Query:  TATLLADG
        TATLLADG
Subjt:  TATLLADG

A0A1S3B2G2 probable mediator of RNA polymerase II transcription subunit 26c3.8e-11198.08Show/hide
Query:  MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEG
        MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC+TDRNHDGRSNGCEIKQ SGEVKGASPST QFVVVEG
Subjt:  MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEG

Query:  DDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ
        DDDG DPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ
Subjt:  DDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ

Query:  TATLLADG
        TATLLADG
Subjt:  TATLLADG

A0A5A7SIU9 Putative mediator of RNA polymerase II transcription subunit 26c3.8e-11198.08Show/hide
Query:  MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEG
        MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC+TDRNHDGRSNGCEIKQ SGEVKGASPST QFVVVEG
Subjt:  MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEG

Query:  DDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ
        DDDG DPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ
Subjt:  DDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ

Query:  TATLLADG
        TATLLADG
Subjt:  TATLLADG

A0A6J1GFA3 probable mediator of RNA polymerase II transcription subunit 26c1.4e-10593.75Show/hide
Query:  MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEG
        MVRLDLDDFRTILDTAGVDVWTFIDTAMEVAS+DYGNQLKNRRDGIVERLYALTSPP+RCRNC+TDR +DGRSNGCEIKQS  E K ASPST QFVVVEG
Subjt:  MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEG

Query:  DDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ
        DD+GVDPY GLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ
Subjt:  DDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ

Query:  TATLLADG
        TATL+ADG
Subjt:  TATLLADG

A0A6J1ILB4 probable mediator of RNA polymerase II transcription subunit 26c8.3e-10694.23Show/hide
Query:  MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEG
        MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPP+RCRNC+TDR +DGRSNGCEIKQS  E K ASPST QFVVVEG
Subjt:  MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEG

Query:  DDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ
        DD+GVDPY GLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ
Subjt:  DDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQ

Query:  TATLLADG
        TATL+ADG
Subjt:  TATLLADG

SwissProt top hitse value%identityAlignment
F4J4Y5 Probable mediator of RNA polymerase II transcription subunit 26a1.6e-1329.85Show/hide
Query:  LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCE-TDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEGDD
        + LD +R        D++  ID A+ VA+ D+  + K+R D I E L+  +   SRC  C+  + +  G     EI    G   G           EG++
Subjt:  LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCE-TDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEGDD

Query:  DGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQTA
              A +  DE  ++ +I    +   + +  L+E L+ L  M ++   LK+T+IG+ VN LR+HSS+ + +L K L  +WK +VD+W  +N P E   
Subjt:  DGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQTA

Query:  T
        T
Subjt:  T

F4KFC7 Probable mediator of RNA polymerase II transcription subunit 26c6.0e-6158.99Show/hide
Query:  LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCE-----------TDRNHDGR-SNGCEIKQSSGEVKGASPS
        +DLDDFR+++D AGVDVWTFIDTA+ VASLDYG +LK RRD IVERLYA TS  ++CRNC+             R ++GR     E +   G    A   
Subjt:  LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCE-----------TDRNHDGR-SNGCEIKQSSGEVKGASPS

Query:  TLQFVVVEGDDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEW
          +  V   DDD  DP+AGLFDDEQK ++EIKE+LE P   E++LVELLQNL DMDITFQAL+ETDIGRHVNR+RKH SN+VRRL K LV+KWKE VDEW
Subjt:  TLQFVVVEGDDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEW

Query:  VRLNQPGE-QTATLLAD
        V+ NQPG+ +  +L+AD
Subjt:  VRLNQPGE-QTATLLAD

Q3ECP0 General transcription and DNA repair factor IIH subunit TFB1-12.4e-5447.47Show/hide
Query:  VDVDLEDPRTVAEALVRSRHAVEG------NEKQTALDRISRMTAIEDLQASHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAY
        +DV+ ED R VAEAL R +   +       +  Q  L+R+SR+  +EDLQA  + P APL IKDPRDYF++QQ N +      + G+++     +  EAY
Subjt:  VDVDLEDPRTVAEALVRSRHAVEG------NEKQTALDRISRMTAIEDLQASHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAY

Query:  YSLRKSISEIKSSGLNHPIIKPEVA--------------------------------------LMHWISIQELLRHFWSSYPITTSYLYTKVSRLKDAMS
          L++SI EI+++GL+ P+IKPEV+                                      L HW SIQELL+HFWSSYPITT+YL+TKV +LKDAMS
Subjt:  YSLRKSISEIKSSGLNHPIIKPEVA--------------------------------------LMHWISIQELLRHFWSSYPITTSYLYTKVSRLKDAMS

Query:  KIYRQLEEIKETVLADFRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKSGERPNGY
          Y +LE +KE+V +D RHQVSLLVRPM QALDAAF H++ DLQ+R+ KSGERPNGY
Subjt:  KIYRQLEEIKETVLADFRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKSGERPNGY

Q9FHK9 Probable mediator of RNA polymerase II transcription subunit 26b7.6e-1632.09Show/hide
Query:  LDDFRTILDTAG-VDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC-----------ETDRNHDGRSNGCEIKQSSGEVKGASP---
        LD +R      G  D++  ID A+ VA+ D  N+ K+RRD I E L++     +RC  C           E +R   G   G        EV G S    
Subjt:  LDDFRTILDTAG-VDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC-----------ETDRNHDGRSNGCEIKQSSGEVKGASP---

Query:  ------------STLQFVVVEGDDDGVDPYAGLFDDEQKKVLEIKE-QLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLV
                    S   F   E   D ++ ++ +     K+V  IKE  L    +P   L++ L++L  M +    LK T+IG+ VN LRKHSS+ +R+L 
Subjt:  ------------STLQFVVVEGDDDGVDPYAGLFDDEQKKVLEIKE-QLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLV

Query:  KHLVRKWKEIVDEWV
        K L+ +WKE+VD+WV
Subjt:  KHLVRKWKEIVDEWV

Q9M322 General transcription and DNA repair factor IIH subunit TFB1-39.9e-4839.74Show/hide
Query:  LKADTGDIWQCSKATSSKYPYEHNIILTNQENMKYIPLLKISRNLKTI-----VDVDLEDPRTVAEALVRSRHA------VEGNEKQTALDRISRMTAIE
        + AD GD +        +    ++II    + +K   L  ++R+   +     ++V  ED R VAEAL R++        +  +  Q  L+R+SR T +E
Subjt:  LKADTGDIWQCSKATSSKYPYEHNIILTNQENMKYIPLLKISRNLKTI-----VDVDLEDPRTVAEALVRSRHA------VEGNEKQTALDRISRMTAIE

Query:  DLQASHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYYSLRKSISEIKSSGLNHPIIKPEVA----------------------
        DLQA  + P APL IKDPRDYF++QQ N +      +A  +      +  EAY  L++SI  I+ +GL+ P+IKPEV+                      
Subjt:  DLQASHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYYSLRKSISEIKSSGLNHPIIKPEVA----------------------

Query:  ----------------LMHWISIQELLRHFWSSYPITTSYLYTKVSRLKDAMSKIYRQLEEIKETVLADFRHQVSLLVRPMHQALDAAFQHHDADLQKRS
                        + HW SIQEL+RHFWSSYPITT+YL TKV +LKDAMS  Y  L+ +K++V +D RHQVSLLVRPM QALDAAFQH+++DLQ+R+
Subjt:  ----------------LMHWISIQELLRHFWSSYPITTSYLYTKVSRLKDAMSKIYRQLEEIKETVLADFRHQVSLLVRPMHQALDAAFQHHDADLQKRS

Query:  VK
         K
Subjt:  VK

Arabidopsis top hitse value%identityAlignment
AT1G55750.1 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)1.7e-5547.47Show/hide
Query:  VDVDLEDPRTVAEALVRSRHAVEG------NEKQTALDRISRMTAIEDLQASHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAY
        +DV+ ED R VAEAL R +   +       +  Q  L+R+SR+  +EDLQA  + P APL IKDPRDYF++QQ N +      + G+++     +  EAY
Subjt:  VDVDLEDPRTVAEALVRSRHAVEG------NEKQTALDRISRMTAIEDLQASHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAY

Query:  YSLRKSISEIKSSGLNHPIIKPEVA--------------------------------------LMHWISIQELLRHFWSSYPITTSYLYTKVSRLKDAMS
          L++SI EI+++GL+ P+IKPEV+                                      L HW SIQELL+HFWSSYPITT+YL+TKV +LKDAMS
Subjt:  YSLRKSISEIKSSGLNHPIIKPEVA--------------------------------------LMHWISIQELLRHFWSSYPITTSYLYTKVSRLKDAMS

Query:  KIYRQLEEIKETVLADFRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKSGERPNGY
          Y +LE +KE+V +D RHQVSLLVRPM QALDAAF H++ DLQ+R+ KSGERPNGY
Subjt:  KIYRQLEEIKETVLADFRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKSGERPNGY

AT3G10820.1 Transcription elongation factor (TFIIS) family protein1.1e-1429.85Show/hide
Query:  LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCE-TDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEGDD
        + LD +R        D++  ID A+ VA+ D+  + K+R D I E L+  +   SRC  C+  + +  G     EI    G   G           EG++
Subjt:  LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCE-TDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEGDD

Query:  DGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQTA
              A +  DE  ++ +I    +   + +  L+E L+ L  M ++   LK+T+IG+ VN LR+HSS+ + +L K L  +WK +VD+W  +N P E   
Subjt:  DGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQTA

Query:  T
        T
Subjt:  T

AT3G61420.1 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)7.0e-4939.74Show/hide
Query:  LKADTGDIWQCSKATSSKYPYEHNIILTNQENMKYIPLLKISRNLKTI-----VDVDLEDPRTVAEALVRSRHA------VEGNEKQTALDRISRMTAIE
        + AD GD +        +    ++II    + +K   L  ++R+   +     ++V  ED R VAEAL R++        +  +  Q  L+R+SR T +E
Subjt:  LKADTGDIWQCSKATSSKYPYEHNIILTNQENMKYIPLLKISRNLKTI-----VDVDLEDPRTVAEALVRSRHA------VEGNEKQTALDRISRMTAIE

Query:  DLQASHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYYSLRKSISEIKSSGLNHPIIKPEVA----------------------
        DLQA  + P APL IKDPRDYF++QQ N +      +A  +      +  EAY  L++SI  I+ +GL+ P+IKPEV+                      
Subjt:  DLQASHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYYSLRKSISEIKSSGLNHPIIKPEVA----------------------

Query:  ----------------LMHWISIQELLRHFWSSYPITTSYLYTKVSRLKDAMSKIYRQLEEIKETVLADFRHQVSLLVRPMHQALDAAFQHHDADLQKRS
                        + HW SIQEL+RHFWSSYPITT+YL TKV +LKDAMS  Y  L+ +K++V +D RHQVSLLVRPM QALDAAFQH+++DLQ+R+
Subjt:  ----------------LMHWISIQELLRHFWSSYPITTSYLYTKVSRLKDAMSKIYRQLEEIKETVLADFRHQVSLLVRPMHQALDAAFQHHDADLQKRS

Query:  VK
         K
Subjt:  VK

AT5G05140.1 Transcription elongation factor (TFIIS) family protein5.4e-1732.09Show/hide
Query:  LDDFRTILDTAG-VDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC-----------ETDRNHDGRSNGCEIKQSSGEVKGASP---
        LD +R      G  D++  ID A+ VA+ D  N+ K+RRD I E L++     +RC  C           E +R   G   G        EV G S    
Subjt:  LDDFRTILDTAG-VDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC-----------ETDRNHDGRSNGCEIKQSSGEVKGASP---

Query:  ------------STLQFVVVEGDDDGVDPYAGLFDDEQKKVLEIKE-QLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLV
                    S   F   E   D ++ ++ +     K+V  IKE  L    +P   L++ L++L  M +    LK T+IG+ VN LRKHSS+ +R+L 
Subjt:  ------------STLQFVVVEGDDDGVDPYAGLFDDEQKKVLEIKE-QLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLV

Query:  KHLVRKWKEIVDEWV
        K L+ +WKE+VD+WV
Subjt:  KHLVRKWKEIVDEWV

AT5G09850.1 Transcription elongation factor (TFIIS) family protein4.2e-6258.99Show/hide
Query:  LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCE-----------TDRNHDGR-SNGCEIKQSSGEVKGASPS
        +DLDDFR+++D AGVDVWTFIDTA+ VASLDYG +LK RRD IVERLYA TS  ++CRNC+             R ++GR     E +   G    A   
Subjt:  LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCE-----------TDRNHDGR-SNGCEIKQSSGEVKGASPS

Query:  TLQFVVVEGDDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEW
          +  V   DDD  DP+AGLFDDEQK ++EIKE+LE P   E++LVELLQNL DMDITFQAL+ETDIGRHVNR+RKH SN+VRRL K LV+KWKE VDEW
Subjt:  TLQFVVVEGDDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEW

Query:  VRLNQPGE-QTATLLAD
        V+ NQPG+ +  +L+AD
Subjt:  VRLNQPGE-QTATLLAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCGGTTGGATTTAGATGATTTTCGAACCATATTAGATACAGCCGGTGTCGATGTTTGGACTTTCATCGATACAGCTATGGAGGTCGCTTCATTGGATTACGGTAA
TCAATTGAAGAATCGGAGAGATGGAATCGTTGAGAGGCTCTACGCGTTGACTTCGCCGCCATCTCGATGCCGGAACTGTGAAACGGATCGCAACCATGACGGCCGTTCTA
ATGGCTGTGAAATCAAACAGAGCTCCGGTGAGGTGAAGGGAGCTTCCCCTTCGACGCTGCAGTTCGTTGTAGTGGAAGGGGATGACGATGGAGTAGACCCATATGCAGGA
TTGTTTGATGATGAACAGAAGAAGGTTTTGGAAATTAAGGAGCAGCTCGAAATTCCTCACCAGCCTGAAGATGCTTTGGTTGAATTGCTTCAAAACTTAGCAGACATGGA
TATAACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAATCGGTTGAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTTAGAAAAT
GGAAGGAGATTGTGGATGAATGGGTCAGGTTGAATCAGCCTGGGGAGCAAACAGCTACACTCTTAGCTGATGGTGTAAAGCTCCTCAAAATGGATATCATCAGGTTCCTG
ATTTTGCATACTCTCCAAATCCACACAATGGAGGTTCTGGGTCGGATAGAAATAACTCAGAACCGGAACCGAAGGGAAAATCCGTTCCAAGAAGAGATGCTCCGCCTAAA
CCAGCACAACCAGCTCCAATGTCGTCTTAAACTCCTTAAAATAGACAGAAAGAACAACAGAAAGAAGCAAATTTTGATTCCCACAAGCTTGTATCAGCTAGAAAAAGGTT
TCAAGAGAATTATAAAGAAGCTGAAAATGCTAAAAGGCAAAGAACAATCCAAGTCATGGACATCCATGAGATCCCAAAGCCAAAGAATGCCTTCTTCTCAAAGAACAAAG
GCAGTGGTGGTGGTTCTCAAGGCAGACACTGGTGATATTTGGCAATGCAGTAAAGCAACATCTTCTAAATATCCATACGAGCACAATATAATCCTAACAAACCAAGAAAA
CATGAAATATATCCCACTGCTAAAGATTTCAAGAAATTTAAAGACAATAGTAGATGTAGACTTGGAAGATCCAAGGACAGTAGCAGAAGCACTTGTGCGGTCTAGACATG
CGGTAGAAGGAAATGAGAAGCAGACAGCACTTGATAGGATCTCTAGGATGACAGCGATTGAGGATCTTCAAGCTTCTCATAGCCATCCTTTTGCTCCTCTTTGTATCAAG
GATCCTCGAGATTATTTTGATGCTCAACAAGCAAATGCCATTAAGACATTGGATGATACACGAGCTGGAATGCAACAAACTAAATGCAGTTTGAGCACTACAGAAGCATA
TTACTCACTGAGGAAATCCATATCTGAGATCAAATCTTCTGGATTGAATCATCCCATAATTAAACCTGAAGTTGCTCTGATGCATTGGATCTCGATTCAAGAATTACTCA
GGCATTTTTGGTCGTCTTATCCAATCACCACATCATATCTTTATACCAAAGTGAGCAGATTGAAGGATGCCATGTCAAAAATATATCGACAGTTAGAGGAGATCAAGGAA
ACTGTGCTAGCAGATTTCCGTCACCAAGTATCTCTTTTGGTTCGTCCAATGCATCAGGCTCTGGATGCTGCTTTTCAGCATCATGACGCTGACTTGCAGAAGAGATCAGT
AAAGAGTGGAGAAAGGCCTAACGGATACACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTCGGTTGGATTTAGATGATTTTCGAACCATATTAGATACAGCCGGTGTCGATGTTTGGACTTTCATCGATACAGCTATGGAGGTCGCTTCATTGGATTACGGTAA
TCAATTGAAGAATCGGAGAGATGGAATCGTTGAGAGGCTCTACGCGTTGACTTCGCCGCCATCTCGATGCCGGAACTGTGAAACGGATCGCAACCATGACGGCCGTTCTA
ATGGCTGTGAAATCAAACAGAGCTCCGGTGAGGTGAAGGGAGCTTCCCCTTCGACGCTGCAGTTCGTTGTAGTGGAAGGGGATGACGATGGAGTAGACCCATATGCAGGA
TTGTTTGATGATGAACAGAAGAAGGTTTTGGAAATTAAGGAGCAGCTCGAAATTCCTCACCAGCCTGAAGATGCTTTGGTTGAATTGCTTCAAAACTTAGCAGACATGGA
TATAACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAATCGGTTGAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTTAGAAAAT
GGAAGGAGATTGTGGATGAATGGGTCAGGTTGAATCAGCCTGGGGAGCAAACAGCTACACTCTTAGCTGATGGTGTAAAGCTCCTCAAAATGGATATCATCAGGTTCCTG
ATTTTGCATACTCTCCAAATCCACACAATGGAGGTTCTGGGTCGGATAGAAATAACTCAGAACCGGAACCGAAGGGAAAATCCGTTCCAAGAAGAGATGCTCCGCCTAAA
CCAGCACAACCAGCTCCAATGTCGTCTTAAACTCCTTAAAATAGACAGAAAGAACAACAGAAAGAAGCAAATTTTGATTCCCACAAGCTTGTATCAGCTAGAAAAAGGTT
TCAAGAGAATTATAAAGAAGCTGAAAATGCTAAAAGGCAAAGAACAATCCAAGTCATGGACATCCATGAGATCCCAAAGCCAAAGAATGCCTTCTTCTCAAAGAACAAAG
GCAGTGGTGGTGGTTCTCAAGGCAGACACTGGTGATATTTGGCAATGCAGTAAAGCAACATCTTCTAAATATCCATACGAGCACAATATAATCCTAACAAACCAAGAAAA
CATGAAATATATCCCACTGCTAAAGATTTCAAGAAATTTAAAGACAATAGTAGATGTAGACTTGGAAGATCCAAGGACAGTAGCAGAAGCACTTGTGCGGTCTAGACATG
CGGTAGAAGGAAATGAGAAGCAGACAGCACTTGATAGGATCTCTAGGATGACAGCGATTGAGGATCTTCAAGCTTCTCATAGCCATCCTTTTGCTCCTCTTTGTATCAAG
GATCCTCGAGATTATTTTGATGCTCAACAAGCAAATGCCATTAAGACATTGGATGATACACGAGCTGGAATGCAACAAACTAAATGCAGTTTGAGCACTACAGAAGCATA
TTACTCACTGAGGAAATCCATATCTGAGATCAAATCTTCTGGATTGAATCATCCCATAATTAAACCTGAAGTTGCTCTGATGCATTGGATCTCGATTCAAGAATTACTCA
GGCATTTTTGGTCGTCTTATCCAATCACCACATCATATCTTTATACCAAAGTGAGCAGATTGAAGGATGCCATGTCAAAAATATATCGACAGTTAGAGGAGATCAAGGAA
ACTGTGCTAGCAGATTTCCGTCACCAAGTATCTCTTTTGGTTCGTCCAATGCATCAGGCTCTGGATGCTGCTTTTCAGCATCATGACGCTGACTTGCAGAAGAGATCAGT
AAAGAGTGGAGAAAGGCCTAACGGATACACTTAGACAATATCAATATAGAACCTTCCTTTCAATTCCCTCACTGAGTTTATCTTCAGATGAAATTTTGCGGTTGACAGCC
ATCATCATGTGTTGGACAAGTTTTTATTTAGCATTCCTAATCTATTGCCTTTCAGTAGTAAATAATGGTATTTCTTCATTTTATATAATCCATAGTAATTATTTCTCCAT
ATATAGAATAAACATTAGAATTGTATTATCATAGCCACTGACTTTTATATATATTATGGGAAGTTACAAAATATTTTATCTTCTAATCATGCCGTTTATTGTAATTGAAA
CTTTGTTTTAAGGGCC
Protein sequenceShow/hide protein sequence
MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEGDDDGVDPYAG
LFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQTATLLADGVKLLKMDIIRFL
ILHTLQIHTMEVLGRIEITQNRNRRENPFQEEMLRLNQHNQLQCRLKLLKIDRKNNRKKQILIPTSLYQLEKGFKRIIKKLKMLKGKEQSKSWTSMRSQSQRMPSSQRTK
AVVVVLKADTGDIWQCSKATSSKYPYEHNIILTNQENMKYIPLLKISRNLKTIVDVDLEDPRTVAEALVRSRHAVEGNEKQTALDRISRMTAIEDLQASHSHPFAPLCIK
DPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYYSLRKSISEIKSSGLNHPIIKPEVALMHWISIQELLRHFWSSYPITTSYLYTKVSRLKDAMSKIYRQLEEIKE
TVLADFRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKSGERPNGYT