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Lsi01G020210 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G020210
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description50S ribosomal protein L18
Genome locationchr01:27642100..27642444
RNA-Seq ExpressionLsi01G020210
SyntenyLsi01G020210
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590442.1 hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia]3.3e-5096.49Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMESTRDVAAA+KIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_008462699.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo]3.3e-5096.49Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPP+KPPRL QYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAA+KIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022961444.1 uncharacterized protein LOC111462025 [Cucurbita moschata]4.3e-5096.49Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMESTRDVAAA+KIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022968817.1 uncharacterized protein LOC111467940 [Cucurbita maxima]9.6e-5095.61Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEK LRSSMESTRDVAAA+KIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_023515963.1 uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo]1.3e-4994.74Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+PPRLTQYLKPY+LKMHFTNK+VSAQVIHS+TATVASAASSQEKALRSSMESTRDVAAA+KIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

TrEMBL top hitse value%identityAlignment
A0A0A0L0Z6 Uncharacterized protein1.0e-4994.74Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPP+KPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMESTRDVAAA+KIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A1S3CHJ0 50S ribosomal protein L181.6e-5096.49Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPP+KPPRL QYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAA+KIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A5D3DYC1 50S ribosomal protein L181.6e-5096.49Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPP+KPPRL QYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAA+KIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1HE21 uncharacterized protein LOC1114620252.1e-5096.49Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMESTRDVAAA+KIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1I0R8 uncharacterized protein LOC1114679404.7e-5095.61Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEK LRSSMESTRDVAAA+KIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

SwissProt top hitse value%identityAlignment
A3DA56 50S ribosomal protein L181.3e-0943.48Show/hide
Query:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T + + AQVI+ E A V +AAS+ EKA++  ++ST +V AA  +GK + ER + KG+ +V    +   KYHG+V A+ D+ REAG+K
Subjt:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

A8IAP8 50S ribosomal protein L184.5e-1044.57Show/hide
Query:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T+K + AQ+I         AASS EK LRSS+++  DV AA  IGKL+ ER   KG+ AV V  +    YHG+VKA+ +  RE G++
Subjt:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

B7VLE1 50S ribosomal protein L181.0e-0943.48Show/hide
Query:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T + V AQVI +  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L KG+ +V       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

B8EBI9 50S ribosomal protein L181.3e-0943.48Show/hide
Query:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T + + AQVI+ E A V +AAS+ EKA++  ++ST +V AA  +GK + ER + KG+ +V    +   KYHG+V A+ D+ REAG+K
Subjt:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

P52863 50S ribosomal protein L185.9e-1044.57Show/hide
Query:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T + V AQVI S  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L KG+  V       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

Arabidopsis top hitse value%identityAlignment
AT1G08845.1 Ribosomal L18p/L5e family protein2.8e-0728.71Show/hide
Query:  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        R   Y++P+ L +  + +FVSA + H  T    + A +  K +++ + S  D+ A   IG++L ER     +       + + K+ GK++AVV S+ + G
Subjt:  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Query:  I
        I
Subjt:  I

AT1G08845.2 Ribosomal L18p/L5e family protein2.8e-0728.71Show/hide
Query:  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        R   Y++P+ L +  + +FVSA + H  T    + A +  K +++ + S  D+ A   IG++L ER     +       + + K+ GK++AVV S+ + G
Subjt:  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Query:  I
        I
Subjt:  I

AT3G20230.1 Ribosomal L18p/L5e family protein1.6e-1032.67Show/hide
Query:  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        R   Y++P++L + F+ KF+ A+V+H  T+ V S A++  + +R+++ S  D  A   IGKL+ ER +   + AV    ++ ++  GK+  V+D+++E G
Subjt:  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Query:  I
        I
Subjt:  I

AT3G45020.1 Ribosomal L18p/L5e family protein1.0e-0428.83Show/hide
Query:  LKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTR--DVAAASKIGKLLGERLLLKGIP-----AVCVHLKREQKYHG-----KVKAVV
        LK YVL++  + K+++A V+      + + AS+ E  +++S+E  R  +  AA+ +G++L  RL ++G+       +   +K+E +  G     KV AV+
Subjt:  LKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTR--DVAAASKIGKLLGERLLLKGIP-----AVCVHLKREQKYHG-----KVKAVV

Query:  DSVREAGIKLL
        +S+R  G+ L+
Subjt:  DSVREAGIKLL

AT5G27820.1 Ribosomal L18p/L5e family protein3.8e-4479.82Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPP V+PPRL  YLKPYVLKMHFTNKFV AQVIHS TATVA +ASSQEKALR +M+ TRDVAAASKIGK+LGERLL+K IPAV + +K+EQ+YHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAG+KLL
Subjt:  AVVDSVREAGIKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATTCCTCCTCCAGTTAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAAGTGATCCACTC
TGAAACAGCCACTGTTGCTTCGGCTGCAAGCTCACAGGAGAAGGCACTGCGGTCGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCTTCAAAGATTGGAAAATTGTTGG
GAGAGAGGCTCTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCCGTGAGGGAAGCAGGT
ATTAAGCTACTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGATTCCTCCTCCAGTTAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAAGTGATCCACTC
TGAAACAGCCACTGTTGCTTCGGCTGCAAGCTCACAGGAGAAGGCACTGCGGTCGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCTTCAAAGATTGGAAAATTGTTGG
GAGAGAGGCTCTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCCGTGAGGGAAGCAGGT
ATTAAGCTACTTTGA
Protein sequenceShow/hide protein sequence
MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
IKLL