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Lsi01G020240 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G020240
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranslation factor GUF1-like protein
Genome locationchr01:27712483..27713278
RNA-Seq ExpressionLsi01G020240
SyntenyLsi01G020240
Gene Ontology termsGO:0045727 - positive regulation of translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003924 - GTPase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR000795 - Translational (tr)-type GTP-binding domain
IPR006297 - Elongation factor 4
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK27433.1 translation factor GUF1-like protein [Cucumis melo var. makuwa]2.4e-5683.33Show/hide
Query:  MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAH
        MAA+LS APLLST TQH R FQSRT+ HFHF    PSLP PL SLSTFPFSSST TTRGKVLC TAG H  DAQ A +AGQ+RLLKVPIS+IRNF IIAH
Subjt:  MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAH

Query:  IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVSLLI
        IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQ SLLI
Subjt:  IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVSLLI

XP_031740276.1 translation factor GUF1 homolog, chloroplastic isoform X2 [Cucumis sativus]1.2e-5582.99Show/hide
Query:  MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAH
        MA ELSSAPLLST TQH R FQSRT+ HFHF    PSLP PL SL+TFPFSSST TTRGKVLC TAG H  DAQ A +AGQNRLLKVPIS+IRNF IIAH
Subjt:  MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAH

Query:  IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS
        IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQ +
Subjt:  IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS

XP_031740277.1 translation factor GUF1 homolog, chloroplastic isoform X3 [Cucumis sativus]1.2e-5582.99Show/hide
Query:  MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAH
        MA ELSSAPLLST TQH R FQSRT+ HFHF    PSLP PL SL+TFPFSSST TTRGKVLC TAG H  DAQ A +AGQNRLLKVPIS+IRNF IIAH
Subjt:  MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAH

Query:  IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS
        IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQ +
Subjt:  IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS

XP_031740278.1 translation factor GUF1 homolog, chloroplastic isoform X4 [Cucumis sativus]1.2e-5582.99Show/hide
Query:  MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAH
        MA ELSSAPLLST TQH R FQSRT+ HFHF    PSLP PL SL+TFPFSSST TTRGKVLC TAG H  DAQ A +AGQNRLLKVPIS+IRNF IIAH
Subjt:  MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAH

Query:  IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS
        IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQ +
Subjt:  IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS

XP_038889419.1 translation factor GUF1 homolog, chloroplastic [Benincasa hispida]2.6e-6389.8Show/hide
Query:  MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAH
        MAAELSSAPLLSTSTQH RLFQSRT++HFHFHF  PSLP P PSLSTFPFSSST TTRGKVLC TAGTHL DAQYAAQAGQ+RLLKVP S+IRNFCIIAH
Subjt:  MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAH

Query:  IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS
        IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQ +
Subjt:  IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS

TrEMBL top hitse value%identityAlignment
A0A0A0L295 Tr-type G domain-containing protein5.7e-5682.99Show/hide
Query:  MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAH
        MA ELSSAPLLST TQH R FQSRT+ HFHF    PSLP PL SL+TFPFSSST TTRGKVLC TAG H  DAQ A +AGQNRLLKVPIS+IRNF IIAH
Subjt:  MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAH

Query:  IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS
        IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQ +
Subjt:  IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS

A0A1S3BMN9 Translation factor GUF1 homolog, chloroplastic3.7e-5582.31Show/hide
Query:  MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAH
        MAA+LS APLLST TQH R FQSRT+ HFHF    PSLP PL SLSTFPFSSST TTRGKVLC TAG H  DAQ A +AGQ+RLLKVPIS+IRNF IIAH
Subjt:  MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAH

Query:  IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS
        IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQ +
Subjt:  IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS

A0A5D3DUS3 Translation factor GUF1-like protein1.2e-5683.33Show/hide
Query:  MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAH
        MAA+LS APLLST TQH R FQSRT+ HFHF    PSLP PL SLSTFPFSSST TTRGKVLC TAG H  DAQ A +AGQ+RLLKVPIS+IRNF IIAH
Subjt:  MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAH

Query:  IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVSLLI
        IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQ SLLI
Subjt:  IDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVSLLI

A0A6J1EAZ6 Translation factor GUF1 homolog, chloroplastic2.5e-5179.19Show/hide
Query:  MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPL-PSLST-FPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCII
        MAAELS APLLST TQH RL QSR  +     FH P+LP PL PSLST    SSST T+RGKVLC TAGTHL DA+ AA+AGQ+RLLKVPIS+IRNFCII
Subjt:  MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPL-PSLST-FPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCII

Query:  AHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS
        AHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQ +
Subjt:  AHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS

A0A6J1HRW4 Translation factor GUF1 homolog, chloroplastic7.3e-5179.19Show/hide
Query:  MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPL-PSLST-FPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCII
        MAAE S APLLST TQH RL QSR  +     FH P+LP PL PS ST    SSST TTRGKVLC TAGTHL DA+ AA+AGQNRLLKVPIS+IRNFCII
Subjt:  MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPL-PSLST-FPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCII

Query:  AHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS
        AHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQ +
Subjt:  AHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS

SwissProt top hitse value%identityAlignment
A5B4D2 Translation factor GUF1 homolog, chloroplastic1.6e-3157.89Show/hide
Query:  MAAELSS-APLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPL-PSLSTFPFSSSTVTTRGKVLCHTAGTHL---VDAQYAAQAGQNRLLKVPISNIRNF
        MAA+++S A L+S    H            H H   P    P  P LST   S         V   TAGT      D   AA +GQ+RLLKVPISNIRNF
Subjt:  MAAELSS-APLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPL-PSLSTFPFSSSTVTTRGKVLCHTAGTHL---VDAQYAAQAGQNRLLKVPISNIRNF

Query:  CIIAHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS
        CIIAHIDHGKSTLADKLLQMTGTVQ REMK+QFLDNMDLERERGITIKLQ +
Subjt:  CIIAHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS

B9F2U5 Translation factor GUF1 homolog, chloroplastic9.8e-2965.42Show/hide
Query:  PLPSLSTFPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGI
        PLPS    P + S    RG+V+C  A            AGQ+RL KVP+SNIRNF IIAHIDHGKSTLADKLL++TGTVQ REMK QFLDNMDLERERGI
Subjt:  PLPSLSTFPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGI

Query:  TIKLQVS
        TIKLQ +
Subjt:  TIKLQVS

B9GHA6 Translation factor GUF1 homolog, chloroplastic1.0e-3075.82Show/hide
Query:  TRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS
        TR  + C T       A +AA AGQ+RL KVPI NIRNFCIIAHIDHGKSTLADKLLQMTGTVQ REMK+QFLDNMDLERERGITIKLQ +
Subjt:  TRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS

B9RHQ5 Translation factor GUF1 homolog, chloroplastic7.3e-3253.21Show/hide
Query:  MAAELSSAP--LLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCHTAG-------THLVDAQYAAQAGQNRLLKVPISN
        MA +LSS+   LLS + + P  + +          H+ +             S + V +R ++LC T G       + + D Q+AAQ GQ+RL KVPISN
Subjt:  MAAELSSAP--LLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCHTAG-------THLVDAQYAAQAGQNRLLKVPISN

Query:  IRNFCIIAHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS
        IRNFCIIAHIDHGKSTLADKLLQ+TGTVQ REMK+QFLDNMDLERERGITIKLQ +
Subjt:  IRNFCIIAHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS

Q9FNM5 Translation factor GUF1 homolog, chloroplastic2.6e-2953.85Show/hide
Query:  AAELSSAP---LLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCH-TAGTH------LVDAQYAAQAGQNRLLKVPISN
        A +LSS P   L  TST  P L                   R L S+S   F   +   + ++LC  TAGT       +  ++ AA++GQ+RLLKVPISN
Subjt:  AAELSSAP---LLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCH-TAGTH------LVDAQYAAQAGQNRLLKVPISN

Query:  IRNFCIIAHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS
        IRNF IIAHIDHGKSTLADKLLQ+TGTVQ R+MK+QFLDNMDLERERGITIKLQ +
Subjt:  IRNFCIIAHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS

Arabidopsis top hitse value%identityAlignment
AT2G31060.3 elongation factor family protein2.0e-0848.28Show/hide
Query:  SNIRNFCIIAHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS
        + +RN  +IAH+DHGK+TL D+LL+  G     E   + +D+++LERERGITI  +VS
Subjt:  SNIRNFCIIAHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS

AT5G08650.1 Small GTP-binding protein1.8e-3053.85Show/hide
Query:  AAELSSAP---LLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCH-TAGTH------LVDAQYAAQAGQNRLLKVPISN
        A +LSS P   L  TST  P L                   R L S+S   F   +   + ++LC  TAGT       +  ++ AA++GQ+RLLKVPISN
Subjt:  AAELSSAP---LLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCH-TAGTH------LVDAQYAAQAGQNRLLKVPISN

Query:  IRNFCIIAHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS
        IRNF IIAHIDHGKSTLADKLLQ+TGTVQ R+MK+QFLDNMDLERERGITIKLQ +
Subjt:  IRNFCIIAHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVS

AT5G13650.1 elongation factor family protein3.0e-0949.06Show/hide
Query:  NIRNFCIIAHIDHGKSTLADKLLQMTGTVQTRE-MKDQFLDNMDLERERGITI
        N+RN  I+AH+DHGK+TL D +L+     +  + M+++ +D+ DLERERGITI
Subjt:  NIRNFCIIAHIDHGKSTLADKLLQMTGTVQTRE-MKDQFLDNMDLERERGITI

AT5G13650.2 elongation factor family protein3.0e-0949.06Show/hide
Query:  NIRNFCIIAHIDHGKSTLADKLLQMTGTVQTRE-MKDQFLDNMDLERERGITI
        N+RN  I+AH+DHGK+TL D +L+     +  + M+++ +D+ DLERERGITI
Subjt:  NIRNFCIIAHIDHGKSTLADKLLQMTGTVQTRE-MKDQFLDNMDLERERGITI

AT5G39900.1 Small GTP-binding protein4.4e-1648.72Show/hide
Query:  DAQYAAQAGQNRLLKVPISNIRNFCIIAHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVSLL
        D++ +++     L K P   IRNF IIAHIDHGKSTLAD+L+++TGT++    + Q+LD + +ERERGIT+K Q + +
Subjt:  DAQYAAQAGQNRLLKVPISNIRNFCIIAHIDHGKSTLADKLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVSLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCAGAGCTTTCTTCCGCGCCTCTCTTATCCACATCCACCCAACATCCTCGTCTTTTCCAATCAAGAACACACAGCCATTTCCATTTCCATTTCCACATCCCTTC
ACTTCCACGTCCACTTCCCTCCCTCTCCACTTTCCCTTTTTCTTCTTCAACTGTAACAACCAGAGGCAAGGTCCTTTGTCACACTGCTGGAACGCATCTCGTCGATGCTC
AATACGCTGCTCAAGCCGGTCAAAATCGACTGTTGAAGGTTCCTATATCGAACATCAGAAACTTCTGCATTATTGCGCACATTGATCATGGTAAATCAACTTTGGCGGAT
AAACTGCTTCAGATGACCGGTACCGTTCAGACGCGAGAAATGAAGGATCAATTTCTCGATAACATGGATTTGGAGAGAGAAAGAGGCATCACAATTAAACTACAGGTCAG
TTTACTCATTTAG
mRNA sequenceShow/hide mRNA sequence
CACGCGCGAAAGGGTGTGGAGTGGAGGGAAAACGGCACATCCTCCGAATTTATGTGGCTGGAAACAGCCCACACCACCACGAAGTTCTCCGTCTCACTATTTTGGGCCTA
ACAAACAAACACACAGTGAAGCTCTCCGTTGGAACTTAGAACAACAATGGCGGCAGAGCTTTCTTCCGCGCCTCTCTTATCCACATCCACCCAACATCCTCGTCTTTTCC
AATCAAGAACACACAGCCATTTCCATTTCCATTTCCACATCCCTTCACTTCCACGTCCACTTCCCTCCCTCTCCACTTTCCCTTTTTCTTCTTCAACTGTAACAACCAGA
GGCAAGGTCCTTTGTCACACTGCTGGAACGCATCTCGTCGATGCTCAATACGCTGCTCAAGCCGGTCAAAATCGACTGTTGAAGGTTCCTATATCGAACATCAGAAACTT
CTGCATTATTGCGCACATTGATCATGGTAAATCAACTTTGGCGGATAAACTGCTTCAGATGACCGGTACCGTTCAGACGCGAGAAATGAAGGATCAATTTCTCGATAACA
TGGATTTGGAGAGAGAAAGAGGCATCACAATTAAACTACAGGTCAGTTTACTCATTTAG
Protein sequenceShow/hide protein sequence
MAAELSSAPLLSTSTQHPRLFQSRTHSHFHFHFHIPSLPRPLPSLSTFPFSSSTVTTRGKVLCHTAGTHLVDAQYAAQAGQNRLLKVPISNIRNFCIIAHIDHGKSTLAD
KLLQMTGTVQTREMKDQFLDNMDLERERGITIKLQVSLLI