; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G020280 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G020280
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription factor
Genome locationchr01:27768969..27770232
RNA-Seq ExpressionLsi01G020280
SyntenyLsi01G020280
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR007592 - GLABROUS1 enhancer-binding protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585873.1 putative transcription factor, partial [Cucurbita argyrosperma subsp. sororia]1.8e-1832.85Show/hide
Query:  NSSSKSKRGREEDEKCSAEIKEESNKFKK----KAFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKL-SSEVSNSQLSDKVYRLRKKFLKYKCKM
        NS S+ K   E  E+   + K  +N  KK    +   W   DE  +L+ LY+F G N SYSK FY FVK +L +++VS  QLS+K+ R +K++LK +C+ 
Subjt:  NSSSKSKRGREEDEKCSAEIKEESNKFKK----KAFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKL-SSEVSNSQLSDKVYRLRKKFLKYKCKM

Query:  ELDGKMSKFSDSNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFKIFVESIKLDITCIPPDVLQHIRKEWE-------DVRSARNDYE
        + +    KFS+ ++ ++F L   IWG +  K+ G                 Y K F  ++E + +DI C+ P  L+H +KEWE       ++ S ++ ++
Subjt:  ELDGKMSKFSDSNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFKIFVESIKLDITCIPPDVLQHIRKEWE-------DVRSARNDYE

Query:  FKNAKLL
         K  +LL
Subjt:  FKNAKLL

XP_022158998.1 probable transcription factor At4g01260 [Momordica charantia]1.8e-5552.97Show/hide
Query:  MATNDSDAETEENYLETRNNDTPPNSSSKS----KRGREED-EKCSA-EIKEESNKFKKKAFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKLSS
        MATN  + E +++   ++      +  S+     KRGRE+D EKCS+   KEES K KK  FHW+W DEC IL+N YEFAGKNGSYSK+FYHFVK KLS 
Subjt:  MATNDSDAETEENYLETRNNDTPPNSSSKS----KRGREED-EKCSA-EIKEESNKFKKKAFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKLSS

Query:  EVSNSQLSDKVYRLRKKFLKYKCKMELDGKMSKFSDSNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFKIFVESIKLDITCIPPDVL
        +VSNSQLSDKVYRLRK+FLK +CK ++  K SK   +  EKL+E+ +NIWG  +   T    S   QWK E V+R  E+ F+  +E++K+DI+CIPP+VL
Subjt:  EVSNSQLSDKVYRLRKKFLKYKCKMELDGKMSKFSDSNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFKIFVESIKLDITCIPPDVL

Query:  QHIRKEWEDVRSARNDYEFKNAKLLVEISDIRCSQN
          IRK+WE ++ A+++YE KNA LL++IS IRC+QN
Subjt:  QHIRKEWEDVRSARNDYEFKNAKLLVEISDIRCSQN

XP_022951915.1 probable transcription factor At1g66420 [Cucurbita moschata]1.4e-1832.37Show/hide
Query:  NSSSKSKRGREEDEKCSAEIKEESN----KFKKKAFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKL-SSEVSNSQLSDKVYRLRKKFLKYKCKM
        NS S+ K   E  E+   + K  +N    + K++   W   DE  +L+ LY+F G N SYSK FY FVK +L +++VS  QLS+K+ R +K++LK +C+ 
Subjt:  NSSSKSKRGREEDEKCSAEIKEESN----KFKKKAFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKL-SSEVSNSQLSDKVYRLRKKFLKYKCKM

Query:  ELDGKMSKFSDSNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFKIFVESIKLDITCIPPDVLQHIRKEWE-------DVRSARNDYE
        + +    KFS+ ++ ++F L   IWG +  K+ G                 Y K F  ++E + +DI C+ P  L+H +KEWE       ++ S ++ ++
Subjt:  ELDGKMSKFSDSNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFKIFVESIKLDITCIPPDVLQHIRKEWE-------DVRSARNDYE

Query:  FKNAKLL
         K  +LL
Subjt:  FKNAKLL

XP_023521141.1 probable transcription factor At1g61730 [Cucurbita pepo subsp. pepo]2.8e-1931.88Show/hide
Query:  NSSSKSKRGREEDEKCSAEIKEESN----KFKKKAFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKL-SSEVSNSQLSDKVYRLRKKFLKYKCKM
        NS S+ K   E  E+   + K  +N    + K++   W   DE  +L+ LY+F G N SYSK FY FVK +L +++VS +Q+S+K+ R +K++LK +C+ 
Subjt:  NSSSKSKRGREEDEKCSAEIKEESN----KFKKKAFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKL-SSEVSNSQLSDKVYRLRKKFLKYKCKM

Query:  ELDGKMSKFSDSNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFKIFVESIKLDITCIPPDVLQHIRKEWE-------DVRSARNDYE
        +++    KFS+ ++ ++F L   IWG +  K+ G                 Y K F  ++E + +DI C+ P  L+H +KEWE       ++ S ++ ++
Subjt:  ELDGKMSKFSDSNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFKIFVESIKLDITCIPPDVLQHIRKEWE-------DVRSARNDYE

Query:  FKNAKLL
         K  +LL
Subjt:  FKNAKLL

XP_038877618.1 STOREKEEPER protein-like [Benincasa hispida]7.2e-6065.99Show/hide
Query:  IKEESNKFKKKAFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKLSSEVSNSQLSDKVYRLRKKFLKYKCKMELDGKM-SKFSDSNKEKLFELWSN
        ++EE    +K  F W+  DECTILEN YEFAGKNG+YSK FYHFVKGKLS EVSNSQLS KVYRLRK+F+K K     +  M  KF D   EK+FEL  N
Subjt:  IKEESNKFKKKAFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKLSSEVSNSQLSDKVYRLRKKFLKYKCKMELDGKM-SKFSDSNKEKLFELWSN

Query:  IWGD--QNPKTT----GPPYSS---IIQWKPEEVDRFYEKRFKIFVESIKLDITCIPPDVLQHIRKEWEDVRSARNDYEFKNAKLLVEISDIRCSQN
        IWGD  +NPK+T    GP  SS   IIQWKPEEV+RFYEKRFKIF+E++KLD+T IP  VL+ +RKEWEDVR ARNDYE KNA LL EISDIRC+QN
Subjt:  IWGD--QNPKTT----GPPYSS---IIQWKPEEVDRFYEKRFKIFVESIKLDITCIPPDVLQHIRKEWEDVRSARNDYEFKNAKLLVEISDIRCSQN

TrEMBL top hitse value%identityAlignment
A0A0A0L833 Uncharacterized protein1.4e-3245.81Show/hide
Query:  MATNDSDAETEENYLETRNNDTPPNSSSKSKRGREEDEKCSAEIKEESNKFKKKAFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKLSSEVSNSQ
        MAT+ SDAETE+NYLE++      +SS+ SK GR+EDE  + E++++                                        ++GKLS EVSNSQ
Subjt:  MATNDSDAETEENYLETRNNDTPPNSSSKSKRGREEDEKCSAEIKEESNKFKKKAFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKLSSEVSNSQ

Query:  LSDKVYRLRKKFLKYKCKMELD-GKMSKFSDSNKEKLFELWSNIWGD-QNPKTTGPPYSSIIQWKPEEVDRFY--EKRFKIFVESIKLDITCIPPDVLQH
        LSDKVYRL+K+F+  K     D  KM  FSDSN +KLFEL SNIWGD +NPK +  P              FY  EK F++ +E +K+DIT IPP  LQ+
Subjt:  LSDKVYRLRKKFLKYKCKMELD-GKMSKFSDSNKEKLFELWSNIWGD-QNPKTTGPPYSSIIQWKPEEVDRFY--EKRFKIFVESIKLDITCIPPDVLQH

Query:  IRKEWEDVRSARNDYEFKNAKLLVEIS
        IRKEWEDV SARN YE K AKLL EIS
Subjt:  IRKEWEDVRSARNDYEFKNAKLLVEIS

A0A6J1DXL5 probable transcription factor At4g012608.9e-5652.97Show/hide
Query:  MATNDSDAETEENYLETRNNDTPPNSSSKS----KRGREED-EKCSA-EIKEESNKFKKKAFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKLSS
        MATN  + E +++   ++      +  S+     KRGRE+D EKCS+   KEES K KK  FHW+W DEC IL+N YEFAGKNGSYSK+FYHFVK KLS 
Subjt:  MATNDSDAETEENYLETRNNDTPPNSSSKS----KRGREED-EKCSA-EIKEESNKFKKKAFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKLSS

Query:  EVSNSQLSDKVYRLRKKFLKYKCKMELDGKMSKFSDSNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFKIFVESIKLDITCIPPDVL
        +VSNSQLSDKVYRLRK+FLK +CK ++  K SK   +  EKL+E+ +NIWG  +   T    S   QWK E V+R  E+ F+  +E++K+DI+CIPP+VL
Subjt:  EVSNSQLSDKVYRLRKKFLKYKCKMELDGKMSKFSDSNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFKIFVESIKLDITCIPPDVL

Query:  QHIRKEWEDVRSARNDYEFKNAKLLVEISDIRCSQN
          IRK+WE ++ A+++YE KNA LL++IS IRC+QN
Subjt:  QHIRKEWEDVRSARNDYEFKNAKLLVEISDIRCSQN

A0A6J1E125 probable transcription factor At4g006103.5e-1230.65Show/hide
Query:  ETRNNDTPPNSSSKSKRGREEDEKCSAEIKEESN-KFKKK----AFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKLSSEVSNSQLSDKVYRLRK
        + R++DT     S+S+   E++++     +  +  K KKK    +F W   DE  +L+ LYEF+GKN +YS+EFY FVK KL  +VS  Q+ +K+  LR+
Subjt:  ETRNNDTPPNSSSKSKRGREEDEKCSAEIKEESN-KFKKK----AFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKLSSEVSNSQLSDKVYRLRK

Query:  KFLKYKCKMELDGK--MSKFSDSNKEKLFELWSNIWG-----DQNPKTTGPPYSSIIQWKPEEVDRFYEKRFKIFVESIKLDITCIPPDVLQHIRKEWE
        K+L+     E +G       S  ++ K+      IWG     ++N    G    S+ Q         YE+ F   +E +++++ C+ P  L+ + K+WE
Subjt:  KFLKYKCKMELDGK--MSKFSDSNKEKLFELWSNIWG-----DQNPKTTGPPYSSIIQWKPEEVDRFYEKRFKIFVESIKLDITCIPPDVLQHIRKEWE

A0A6J1GK86 probable transcription factor At1g664206.6e-1932.37Show/hide
Query:  NSSSKSKRGREEDEKCSAEIKEESN----KFKKKAFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKL-SSEVSNSQLSDKVYRLRKKFLKYKCKM
        NS S+ K   E  E+   + K  +N    + K++   W   DE  +L+ LY+F G N SYSK FY FVK +L +++VS  QLS+K+ R +K++LK +C+ 
Subjt:  NSSSKSKRGREEDEKCSAEIKEESN----KFKKKAFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKL-SSEVSNSQLSDKVYRLRKKFLKYKCKM

Query:  ELDGKMSKFSDSNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFKIFVESIKLDITCIPPDVLQHIRKEWE-------DVRSARNDYE
        + +    KFS+ ++ ++F L   IWG +  K+ G                 Y K F  ++E + +DI C+ P  L+H +KEWE       ++ S ++ ++
Subjt:  ELDGKMSKFSDSNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFKIFVESIKLDITCIPPDVLQHIRKEWE-------DVRSARNDYE

Query:  FKNAKLL
         K  +LL
Subjt:  FKNAKLL

A0A6J1I882 probable transcription factor At1g617308.7e-1935.52Show/hide
Query:  NSSSKSKRGREEDEKCSAEIKEESNKFKK----KAFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKLS-SEVSNSQLSDKVYRLRKKFLKYKCKM
        NS SK K   E  E+   + K  ++  KK    +   W   DE  +L+ LYEF G N SYSK FY FVK +LS ++VS  Q S+K+ R +K++LK +C+ 
Subjt:  NSSSKSKRGREEDEKCSAEIKEESNKFKK----KAFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKLS-SEVSNSQLSDKVYRLRKKFLKYKCKM

Query:  ELDGKMSKFSDSNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFKIFVESIKLDITCIPPDVLQHIRKEWE
        + +    KFS+ ++ ++F L   IWG +  K+ G                 Y K F  ++E + +DI C+ P  L+H +KEWE
Subjt:  ELDGKMSKFSDSNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFKIFVESIKLDITCIPPDVLQHIRKEWE

SwissProt top hitse value%identityAlignment
O23063 Probable transcription factor At4g003901.5e-0427.54Show/hide
Query:  ATNDSDAETE-ENYLETRNNDTPPNSSSKSKRGREEDEKCSA--------------------------EIKEESNKFKKKAFH---WNWGDECTILENLY
        A  DSD+ +E E   ++ + D P + S K+   +++D+  S+                           +K++    KK A     W+  DE ++L+ + 
Subjt:  ATNDSDAETE-ENYLETRNNDTPPNSSSKSKRGREEDEKCSA--------------------------EIKEESNKFKKKAFH---WNWGDECTILENLY

Query:  EFAGKNG----SYSKEFYHFVKGKLSSEVSNSQLSDKVYRLRKKFLKYKCKMELDGKMSKFSDSNKEKLFELWSNIWG------DQNPKTTGPPYSSIIQ
        ++    G    + +  FY F K  +S EVS SQ SDKV  LRKK+   + K E      +F  ++ +K FEL   IWG      D N K+ G    S  +
Subjt:  EFAGKNG----SYSKEFYHFVKGKLSSEVSNSQLSDKVYRLRKKFLKYKCKMELDGKMSKFSDSNKEKLFELWSNIWG------DQNPKTTGPPYSSIIQ

Query:  WKPEEVD
         K E++D
Subjt:  WKPEEVD

Q94IK2 STOREKEEPER protein5.8e-0429.19Show/hide
Query:  NDSDAETEENYLETRNND--TPPNSSSKSKRGREEDEKCSAEIKEESNKFKKKAFH-------------WNWGDECTILENLYEFAGKNG----SYSKEF
        +DS+AE+  +      +D    PN ++K+    +   K   E ++E  K K K                W+  D+  +L+ + E+    G    +    F
Subjt:  NDSDAETEENYLETRNND--TPPNSSSKSKRGREEDEKCSAEIKEESNKFKKKAFH-------------WNWGDECTILENLYEFAGKNG----SYSKEF

Query:  YHFVKGKLSSEVSNSQLSDKVYRLRKKFLKYKCKMELDGKMSKFSDSNKEKLFELWSNIWG
        + F++GKL +EVS SQ+SDKV RL+KKFL        DG+   F       +FE    IWG
Subjt:  YHFVKGKLSSEVSNSQLSDKVYRLRKKFLKYKCKMELDGKMSKFSDSNKEKLFELWSNIWG

Arabidopsis top hitse value%identityAlignment
AT4G00390.1 DNA-binding storekeeper protein-related transcriptional regulator1.1e-0527.54Show/hide
Query:  ATNDSDAETE-ENYLETRNNDTPPNSSSKSKRGREEDEKCSA--------------------------EIKEESNKFKKKAFH---WNWGDECTILENLY
        A  DSD+ +E E   ++ + D P + S K+   +++D+  S+                           +K++    KK A     W+  DE ++L+ + 
Subjt:  ATNDSDAETE-ENYLETRNNDTPPNSSSKSKRGREEDEKCSA--------------------------EIKEESNKFKKKAFH---WNWGDECTILENLY

Query:  EFAGKNG----SYSKEFYHFVKGKLSSEVSNSQLSDKVYRLRKKFLKYKCKMELDGKMSKFSDSNKEKLFELWSNIWG------DQNPKTTGPPYSSIIQ
        ++    G    + +  FY F K  +S EVS SQ SDKV  LRKK+   + K E      +F  ++ +K FEL   IWG      D N K+ G    S  +
Subjt:  EFAGKNG----SYSKEFYHFVKGKLSSEVSNSQLSDKVYRLRKKFLKYKCKMELDGKMSKFSDSNKEKLFELWSNIWG------DQNPKTTGPPYSSIIQ

Query:  WKPEEVD
         K E++D
Subjt:  WKPEEVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACAAATGATTCTGATGCTGAAACTGAAGAAAATTATTTGGAGACAAGAAACAACGATACTCCGCCAAATTCATCCTCAAAGTCAAAACGTGGAAGAGAAGAAGA
TGAAAAATGCAGTGCTGAGATAAAGGAGGAATCAAATAAATTTAAAAAAAAGGCTTTTCATTGGAATTGGGGTGACGAATGTACCATCTTGGAGAATTTGTATGAATTTG
CAGGCAAAAACGGGAGTTATTCAAAGGAGTTCTACCACTTTGTGAAGGGGAAGTTGAGTAGTGAGGTATCGAATTCTCAATTGTCAGATAAAGTGTATAGGTTGAGGAAG
AAATTCTTGAAGTATAAATGTAAGATGGAATTAGATGGAAAAATGAGTAAATTTTCAGATAGTAATAAGGAGAAGTTGTTTGAGTTATGGAGCAACATTTGGGGCGACCA
AAACCCTAAAACTACTGGACCCCCATATTCTTCAATAATTCAATGGAAGCCTGAAGAAGTTGATCGGTTCTATGAGAAAAGGTTTAAAATTTTTGTTGAAAGTATCAAGC
TTGACATCACCTGCATTCCACCTGATGTTTTGCAACACATTAGAAAAGAATGGGAAGATGTGAGGAGTGCTAGGAATGATTATGAGTTCAAGAATGCCAAGTTACTTGTG
GAAATCTCTGATATAAGATGTAGTCAGAATAAGTGCTAG
mRNA sequenceShow/hide mRNA sequence
TCTGAATTAAAAAAAAAAATGCGGTCAGTGAAGAAGGAAAGGAAAAAGAGAGAAAAAACCCTAGCCTCCATTGATCTCTTCGCCGGCAAGCCTCAGACGGCGACGGCCCA
CACGAAGTCACGTTGACACGAGCGGAAAGCCAGGCGTTGAAGGTGTTACTCACGAACCCACCTTCTCTCCCTCACAGATATATCAGTTGGATAAGTGAGCATTCTAATGG
CAACAAATGATTCTGATGCTGAAACTGAAGAAAATTATTTGGAGACAAGAAACAACGATACTCCGCCAAATTCATCCTCAAAGTCAAAACGTGGAAGAGAAGAAGATGAA
AAATGCAGTGCTGAGATAAAGGAGGAATCAAATAAATTTAAAAAAAAGGCTTTTCATTGGAATTGGGGTGACGAATGTACCATCTTGGAGAATTTGTATGAATTTGCAGG
CAAAAACGGGAGTTATTCAAAGGAGTTCTACCACTTTGTGAAGGGGAAGTTGAGTAGTGAGGTATCGAATTCTCAATTGTCAGATAAAGTGTATAGGTTGAGGAAGAAAT
TCTTGAAGTATAAATGTAAGATGGAATTAGATGGAAAAATGAGTAAATTTTCAGATAGTAATAAGGAGAAGTTGTTTGAGTTATGGAGCAACATTTGGGGCGACCAAAAC
CCTAAAACTACTGGACCCCCATATTCTTCAATAATTCAATGGAAGCCTGAAGAAGTTGATCGGTTCTATGAGAAAAGGTTTAAAATTTTTGTTGAAAGTATCAAGCTTGA
CATCACCTGCATTCCACCTGATGTTTTGCAACACATTAGAAAAGAATGGGAAGATGTGAGGAGTGCTAGGAATGATTATGAGTTCAAGAATGCCAAGTTACTTGTGGAAA
TCTCTGATATAAGATGTAGTCAGAATAAGTGCTAGCTAATCAACACTTTAATCTCTTTTTCTGATCTTTTCTACTTTCTCAACATTAATTTGTTATCACTTCCCCCCTAC
TCTATTCTTTATGTTATCCTATCTAAGGGGGATAATTAGCCCCATATTATTATTGATCATTATATTGCTTCAATTTAAGTCACATCTCTCACTACCTAA
Protein sequenceShow/hide protein sequence
MATNDSDAETEENYLETRNNDTPPNSSSKSKRGREEDEKCSAEIKEESNKFKKKAFHWNWGDECTILENLYEFAGKNGSYSKEFYHFVKGKLSSEVSNSQLSDKVYRLRK
KFLKYKCKMELDGKMSKFSDSNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFKIFVESIKLDITCIPPDVLQHIRKEWEDVRSARNDYEFKNAKLLV
EISDIRCSQNKC