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Lsi01G020300 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G020300
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA-directed DNA polymerase
Genome locationchr01:27983053..27984141
RNA-Seq ExpressionLsi01G020300
SyntenyLsi01G020300
Gene Ontology termsGO:0006261 - DNA-dependent DNA replication (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038899891.1 DNA polymerase I isoform X1 [Benincasa hispida]6.7e-5787.23Show/hide
Query:  MASHHLHTATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQF
        MA HHLHTATASASHICRN LGFIFTSK PNP RF  SSSSSSLRIQSLGHHS PSFS+LLSPKGYCSSSGSI+  NTVDS AT+H SSASSRSQQMLQF
Subjt:  MASHHLHTATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQF

Query:  QDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL
        QDSLS+SL+YKEETGI+NPSDARVMLIDGTS+IYRAYYKLL
Subjt:  QDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL

XP_038899892.1 DNA polymerase I isoform X2 [Benincasa hispida]6.7e-5787.23Show/hide
Query:  MASHHLHTATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQF
        MA HHLHTATASASHICRN LGFIFTSK PNP RF  SSSSSSLRIQSLGHHS PSFS+LLSPKGYCSSSGSI+  NTVDS AT+H SSASSRSQQMLQF
Subjt:  MASHHLHTATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQF

Query:  QDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL
        QDSLS+SL+YKEETGI+NPSDARVMLIDGTS+IYRAYYKLL
Subjt:  QDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL

XP_038899895.1 DNA polymerase I isoform X4 [Benincasa hispida]6.7e-5787.23Show/hide
Query:  MASHHLHTATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQF
        MA HHLHTATASASHICRN LGFIFTSK PNP RF  SSSSSSLRIQSLGHHS PSFS+LLSPKGYCSSSGSI+  NTVDS AT+H SSASSRSQQMLQF
Subjt:  MASHHLHTATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQF

Query:  QDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL
        QDSLS+SL+YKEETGI+NPSDARVMLIDGTS+IYRAYYKLL
Subjt:  QDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL

XP_038899896.1 DNA polymerase I isoform X5 [Benincasa hispida]6.7e-5787.23Show/hide
Query:  MASHHLHTATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQF
        MA HHLHTATASASHICRN LGFIFTSK PNP RF  SSSSSSLRIQSLGHHS PSFS+LLSPKGYCSSSGSI+  NTVDS AT+H SSASSRSQQMLQF
Subjt:  MASHHLHTATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQF

Query:  QDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL
        QDSLS+SL+YKEETGI+NPSDARVMLIDGTS+IYRAYYKLL
Subjt:  QDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL

XP_038899897.1 DNA polymerase I isoform X6 [Benincasa hispida]6.7e-5787.23Show/hide
Query:  MASHHLHTATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQF
        MA HHLHTATASASHICRN LGFIFTSK PNP RF  SSSSSSLRIQSLGHHS PSFS+LLSPKGYCSSSGSI+  NTVDS AT+H SSASSRSQQMLQF
Subjt:  MASHHLHTATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQF

Query:  QDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL
        QDSLS+SL+YKEETGI+NPSDARVMLIDGTS+IYRAYYKLL
Subjt:  QDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL

TrEMBL top hitse value%identityAlignment
A0A6J1D5H5 DNA-directed DNA polymerase1.9e-4980.56Show/hide
Query:  MASHHLH--TATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYH-SSSASSRSQQM
        MA HHLH  TATA+ASHICRN LG+IFTS+  +PLR    SSSSSL+IQSL HHSFPSFSLL SPKGYCSSSG +NA N VDSNATYH SSSASS+SQQM
Subjt:  MASHHLH--TATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYH-SSSASSRSQQM

Query:  LQFQDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL
        LQFQDSL NSL +KEE GID+PSDARVMLIDGTSIIYRAYYKLL
Subjt:  LQFQDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL

A0A6J1D6K2 DNA-directed DNA polymerase1.9e-4980.56Show/hide
Query:  MASHHLH--TATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYH-SSSASSRSQQM
        MA HHLH  TATA+ASHICRN LG+IFTS+  +PLR    SSSSSL+IQSL HHSFPSFSLL SPKGYCSSSG +NA N VDSNATYH SSSASS+SQQM
Subjt:  MASHHLH--TATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYH-SSSASSRSQQM

Query:  LQFQDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL
        LQFQDSL NSL +KEE GID+PSDARVMLIDGTSIIYRAYYKLL
Subjt:  LQFQDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL

A0A6J1D7Q6 DNA-directed DNA polymerase1.9e-4980.56Show/hide
Query:  MASHHLH--TATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYH-SSSASSRSQQM
        MA HHLH  TATA+ASHICRN LG+IFTS+  +PLR    SSSSSL+IQSL HHSFPSFSLL SPKGYCSSSG +NA N VDSNATYH SSSASS+SQQM
Subjt:  MASHHLH--TATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYH-SSSASSRSQQM

Query:  LQFQDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL
        LQFQDSL NSL +KEE GID+PSDARVMLIDGTSIIYRAYYKLL
Subjt:  LQFQDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL

A0A6J1D847 uncharacterized protein LOC111017796 isoform X21.9e-4980.56Show/hide
Query:  MASHHLH--TATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYH-SSSASSRSQQM
        MA HHLH  TATA+ASHICRN LG+IFTS+  +PLR    SSSSSL+IQSL HHSFPSFSLL SPKGYCSSSG +NA N VDSNATYH SSSASS+SQQM
Subjt:  MASHHLH--TATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYH-SSSASSRSQQM

Query:  LQFQDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL
        LQFQDSL NSL +KEE GID+PSDARVMLIDGTSIIYRAYYKLL
Subjt:  LQFQDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL

A0A6J1HVF9 DNA-directed DNA polymerase3.9e-5081.56Show/hide
Query:  MASHHLHTATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQF
        MA HHLHTATASASHICRN LG+IFTSK  +PLRF  SSSSSSLRIQS GHH FPSFS+LLSPKGYCSSS S+NA   VDSNATYH S ASS SQQMLQ 
Subjt:  MASHHLHTATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQF

Query:  QDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL
        QDSLSNS + KEET ID+PSDARVMLIDGTSIIYRAY+KLL
Subjt:  QDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52050.1 5'-3' exonuclease family protein4.1e-0442.39Show/hide
Query:  SFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQFQDSLSNSLSYKEETGIDN---PSDARVMLIDGTSIIYRAYYKLL
        S  S SL  S K YCSS       N   S +T  S S     Q         S    +K E  + +    S+ RVMLIDGTSIIYRAYYKLL
Subjt:  SFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQFQDSLSNSLSYKEETGIDN---PSDARVMLIDGTSIIYRAYYKLL

AT3G52050.2 5'-3' exonuclease family protein4.1e-0442.39Show/hide
Query:  SFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQFQDSLSNSLSYKEETGIDN---PSDARVMLIDGTSIIYRAYYKLL
        S  S SL  S K YCSS       N   S +T  S S     Q         S    +K E  + +    S+ RVMLIDGTSIIYRAYYKLL
Subjt:  SFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQFQDSLSNSLSYKEETGIDN---PSDARVMLIDGTSIIYRAYYKLL

AT3G52050.3 5'-3' exonuclease family protein4.1e-0442.39Show/hide
Query:  SFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQFQDSLSNSLSYKEETGIDN---PSDARVMLIDGTSIIYRAYYKLL
        S  S SL  S K YCSS       N   S +T  S S     Q         S    +K E  + +    S+ RVMLIDGTSIIYRAYYKLL
Subjt:  SFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQFQDSLSNSLSYKEETGIDN---PSDARVMLIDGTSIIYRAYYKLL

AT3G52050.4 5'-3' exonuclease family protein4.1e-0442.39Show/hide
Query:  SFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQFQDSLSNSLSYKEETGIDN---PSDARVMLIDGTSIIYRAYYKLL
        S  S SL  S K YCSS       N   S +T  S S     Q         S    +K E  + +    S+ RVMLIDGTSIIYRAYYKLL
Subjt:  SFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQFQDSLSNSLSYKEETGIDN---PSDARVMLIDGTSIIYRAYYKLL

AT3G52050.5 5'-3' exonuclease family protein4.1e-0442.39Show/hide
Query:  SFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQFQDSLSNSLSYKEETGIDN---PSDARVMLIDGTSIIYRAYYKLL
        S  S SL  S K YCSS       N   S +T  S S     Q         S    +K E  + +    S+ RVMLIDGTSIIYRAYYKLL
Subjt:  SFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQFQDSLSNSLSYKEETGIDN---PSDARVMLIDGTSIIYRAYYKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCCCACCATCTTCACACTGCGACTGCTAGTGCCTCGCATATTTGTAGAAATTTGTTGGGTTTCATTTTCACCTCCAAATTGCCTAATCCTCTTCGTTTCTCCTC
TTCTTCTTCTTCGTCTTCTTTGAGGATACAGTCTCTTGGTCATCATTCTTTTCCGTCTTTCTCTCTTCTGCTATCCCCGAAGGGTTACTGTAGTTCATCCGGAAGTATAA
ATGCTCCCAATACCGTAGATAGCAATGCAACTTATCATAGTAGTTCTGCATCTTCTAGAAGCCAGCAAATGCTGCAATTCCAAGATTCATTATCGAATTCACTTTCGTAC
AAAGAAGAAACTGGAATTGATAATCCTTCAGATGCTAGAGTTATGCTCATTGATGGCACATCAATCATTTATAGAGCATACTACAAGCTTTTGGAAACACGAACAAACTT
CATTAATAGAAAAGAAGATACAAAAATGGAGACGAGATATCTCTGA
mRNA sequenceShow/hide mRNA sequence
AATAATAATAAAAGAAGAACCCTTGAGGATGGGCGAACGAAGATCGTAAGCAAAGTTACATTGCGAATTGGGCAGTCTCATGGCCTCCCACCATCTTCACACTGCGACTG
CTAGTGCCTCGCATATTTGTAGAAATTTGTTGGGTTTCATTTTCACCTCCAAATTGCCTAATCCTCTTCGTTTCTCCTCTTCTTCTTCTTCGTCTTCTTTGAGGATACAG
TCTCTTGGTCATCATTCTTTTCCGTCTTTCTCTCTTCTGCTATCCCCGAAGGGTTACTGTAGTTCATCCGGAAGTATAAATGCTCCCAATACCGTAGATAGCAATGCAAC
TTATCATAGTAGTTCTGCATCTTCTAGAAGCCAGCAAATGCTGCAATTCCAAGATTCATTATCGAATTCACTTTCGTACAAAGAAGAAACTGGAATTGATAATCCTTCAG
ATGCTAGAGTTATGCTCATTGATGGCACATCAATCATTTATAGAGCATACTACAAGCTTTTGGAAACACGAACAAACTTCATTAATAGAAAAGAAGATACAAAAATGGAG
ACGAGATATCTCTGA
Protein sequenceShow/hide protein sequence
MASHHLHTATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQFQDSLSNSLSY
KEETGIDNPSDARVMLIDGTSIIYRAYYKLLETRTNFINRKEDTKMETRYL