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Lsi01G020310 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G020310
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA-directed DNA polymerase
Genome locationchr01:28006100..28016698
RNA-Seq ExpressionLsi01G020310
SyntenyLsi01G020310
Gene Ontology termsGO:0034645 - cellular macromolecule biosynthetic process (biological process)
GO:0090304 - nucleic acid metabolic process (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR020046 - 5'-3' exonuclease, alpha-helical arch, N-terminal
IPR029060 - PIN-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022933106.1 uncharacterized protein LOC111439872 isoform X1 [Cucurbita moschata]6.5e-1771.23Show/hide
Query:  STFRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK
        STFRHTRYPAYKSNRPPTPDTIVQGL   K            VPGVEADDVIGTLALRSVAAGCK R    +K
Subjt:  STFRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK

XP_022933108.1 uncharacterized protein LOC111439872 isoform X2 [Cucurbita moschata]6.5e-1771.23Show/hide
Query:  STFRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK
        STFRHTRYPAYKSNRPPTPDTIVQGL   K            VPGVEADDVIGTLALRSVAAGCK R    +K
Subjt:  STFRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK

XP_023543412.1 uncharacterized protein LOC111803303 isoform X2 [Cucurbita pepo subsp. pepo]6.5e-1771.23Show/hide
Query:  STFRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK
        STFRHTRYPAYKSNRPPTPDTIVQGL   K            VPGVEADDVIGTLALRSVAAGCK R    +K
Subjt:  STFRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK

XP_038899892.1 DNA polymerase I isoform X2 [Benincasa hispida]2.9e-1774.29Show/hide
Query:  STFRHTRYPAYKSNRPPTPDTIVQGLHLRKF--------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK
        STFRHTRYPAYKSNRPPTPDTIVQGL   K         VPGVEADDVIGTLALRSVAAGCK R    +K
Subjt:  STFRHTRYPAYKSNRPPTPDTIVQGLHLRKF--------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK

XP_038899896.1 DNA polymerase I isoform X5 [Benincasa hispida]2.9e-1774.29Show/hide
Query:  STFRHTRYPAYKSNRPPTPDTIVQGLHLRKF--------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK
        STFRHTRYPAYKSNRPPTPDTIVQGL   K         VPGVEADDVIGTLALRSVAAGCK R    +K
Subjt:  STFRHTRYPAYKSNRPPTPDTIVQGLHLRKF--------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK

TrEMBL top hitse value%identityAlignment
A0A6J1D5H7 DNA-directed DNA polymerase2.9e-1567.12Show/hide
Query:  STFRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK
        STFRH  YPAYKSNRPPTPDTIVQGL   K            VPGVEADDVIGTLALRSVA GCK R    +K
Subjt:  STFRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK

A0A6J1D847 uncharacterized protein LOC111017796 isoform X22.9e-1567.12Show/hide
Query:  STFRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK
        STFRH  YPAYKSNRPPTPDTIVQGL   K            VPGVEADDVIGTLALRSVA GCK R    +K
Subjt:  STFRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK

A0A6J1EY78 DNA-directed DNA polymerase3.1e-1771.23Show/hide
Query:  STFRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK
        STFRHTRYPAYKSNRPPTPDTIVQGL   K            VPGVEADDVIGTLALRSVAAGCK R    +K
Subjt:  STFRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK

A0A6J1F3S3 DNA-directed DNA polymerase3.1e-1771.23Show/hide
Query:  STFRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK
        STFRHTRYPAYKSNRPPTPDTIVQGL   K            VPGVEADDVIGTLALRSVAAGCK R    +K
Subjt:  STFRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK

A0A6J1HVF9 DNA-directed DNA polymerase3.1e-1771.23Show/hide
Query:  STFRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK
        STFRHTRYPAYKSNRPPTPDTIVQGL   K            VPGVEADDVIGTLALRSVAAGCK R    +K
Subjt:  STFRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK

SwissProt top hitse value%identityAlignment
O52225 DNA polymerase I, thermostable1.3e-0440.91Show/hide
Query:  TFRHTRYPAYKSNRPPTPDTIVQGLHL-----------RKFVPGVEADDVIGTLALRSVAAGCKQR
        +FRH  Y AYK+ R PTP+   + L L           R   PG EADDV+GTLA ++   G + R
Subjt:  TFRHTRYPAYKSNRPPTPDTIVQGLHL-----------RKFVPGVEADDVIGTLALRSVAAGCKQR

P30313 DNA polymerase I, thermostable1.3e-0442.42Show/hide
Query:  TFRHTRYPAYKSNRPPTPDTIVQGLHL-----------RKFVPGVEADDVIGTLALRSVAAGCKQR
        +FRH  Y AYK+ R PTP+   + L L           R  VPG EADDV+ TLA R+   G + R
Subjt:  TFRHTRYPAYKSNRPPTPDTIVQGLHL-----------RKFVPGVEADDVIGTLALRSVAAGCKQR

P43741 DNA polymerase I2.7e-0546.88Show/hide
Query:  TFRHTRYPAYKSNRPPTPDTI---VQGLH--LRKF------VPGVEADDVIGTLALRSVAAGCK
        TFR   +  YKS+RPP PD +   +Q LH  +R        V G+EADDVIGTLAL++ + G K
Subjt:  TFRHTRYPAYKSNRPPTPDTI---VQGLH--LRKF------VPGVEADDVIGTLALRSVAAGCK

Q9RAA9 DNA polymerase I1.0e-0442.62Show/hide
Query:  FRHTRYPAYKSNRPPTPDTIVQGLHLRKFVP-----------GVEADDVIGTLALRSVAAG
        FRH  YP YK+NRPP P+ +V  L L + V            G EADD+I T A ++ A G
Subjt:  FRHTRYPAYKSNRPPTPDTIVQGLHLRKFVP-----------GVEADDVIGTLALRSVAAG

Q9RLB6 DNA polymerase I1.3e-0440.98Show/hide
Query:  FRHTRYPAYKSNRPPTPDTIVQGLHLRKFVP-----------GVEADDVIGTLALRSVAAG
        FRH  YP YK+NRPP P+ ++  L L + V            G EADD+I T A ++ A G
Subjt:  FRHTRYPAYKSNRPPTPDTIVQGLHLRKFVP-----------GVEADDVIGTLALRSVAAG

Arabidopsis top hitse value%identityAlignment
AT3G52050.1 5'-3' exonuclease family protein4.1e-1763.38Show/hide
Query:  FRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK
        FRHT YPAYKSNRPPTPDTIVQGL   K            VPGVEADDVIGTLA+RS++AG K R    +K
Subjt:  FRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK

AT3G52050.2 5'-3' exonuclease family protein4.1e-1763.38Show/hide
Query:  FRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK
        FRHT YPAYKSNRPPTPDTIVQGL   K            VPGVEADDVIGTLA+RS++AG K R    +K
Subjt:  FRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK

AT3G52050.3 5'-3' exonuclease family protein4.1e-1763.38Show/hide
Query:  FRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK
        FRHT YPAYKSNRPPTPDTIVQGL   K            VPGVEADDVIGTLA+RS++AG K R    +K
Subjt:  FRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK

AT3G52050.4 5'-3' exonuclease family protein4.1e-1763.38Show/hide
Query:  FRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK
        FRHT YPAYKSNRPPTPDTIVQGL   K            VPGVEADDVIGTLA+RS++AG K R    +K
Subjt:  FRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK

AT3G52050.5 5'-3' exonuclease family protein4.1e-1763.38Show/hide
Query:  FRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK
        FRHT YPAYKSNRPPTPDTIVQGL   K            VPGVEADDVIGTLA+RS++AG K R    +K
Subjt:  FRHTRYPAYKSNRPPTPDTIVQGLHLRKF-----------VPGVEADDVIGTLALRSVAAGCKQRTEEVEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCCACTTTTCGTCATACACGTTACCCTGCATACAAGAGTAACAGGCCACCTACACCTGATACCATTGTCCAGGGGCTCCACTTGAGGAAATTTGTACCTGGAGTTGAAGC
TGATGATGTAATTGGCACATTGGCTTTGAGAAGTGTTGCTGCTGGGTGTAAGCAAAGGACAGAGGAAGTTGAAAAGCCTCAAGATCTCCCTCCAAAGGTTGCGCAAATTC
CCGAGAATGAAGGCACCTCAAGGGTTTTATTGGAAAATGGTTCTCTCGCA
mRNA sequenceShow/hide mRNA sequence
TCCACTTTTCGTCATACACGTTACCCTGCATACAAGAGTAACAGGCCACCTACACCTGATACCATTGTCCAGGGGCTCCACTTGAGGAAATTTGTACCTGGAGTTGAAGC
TGATGATGTAATTGGCACATTGGCTTTGAGAAGTGTTGCTGCTGGGTGTAAGCAAAGGACAGAGGAAGTTGAAAAGCCTCAAGATCTCCCTCCAAAGGTTGCGCAAATTC
CCGAGAATGAAGGCACCTCAAGGGTTTTATTGGAAAATGGTTCTCTCGCA
Protein sequenceShow/hide protein sequence
STFRHTRYPAYKSNRPPTPDTIVQGLHLRKFVPGVEADDVIGTLALRSVAAGCKQRTEEVEKPQDLPPKVAQIPENEGTSRVLLENGSLA