CuGenDBv2

Gene ID	Lsi01G020360
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Ribosome biogenesis protein
Genome location	chr01:28082921..28088517
RNA-Seq Expression	Lsi01G020360
Synteny	Lsi01G020360
Gene Ontology terms	GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0005730 - nucleolus (cellular component) GO:0030686 - 90S preribosome (cellular component) GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domains	IPR028160 - Ribosome biogenesis protein Slx9-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037498.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]

4.7e-71

93.04

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Query:  MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMG
        MGKPVSRSD+KSKAERKFEKKVQFYERVGE+IATLNAQK+ITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA KQKPS+AELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSMEM
        TVLNHPVFQADPL+A+QLHLEGTQP EEPKKK  NKNGSKKRKEKK KASARPSSMEM
Subjt:  TVLNHPVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSMEM

KAA0062508.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]

1.1e-67

92.16

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Query:  SRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMGTVLNH
        ++SD+KSKAERKFEKKVQFYERVGE+IATLNAQK+ITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA KQKPS+AELKLNCKSRLKFILKERKQMGTVLNH
Subjt:  SRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMGTVLNH

Query:  PVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSMEM
        PVFQADPL+A+QLHLEGTQPIEEPKKK  NKNGSKKRKEKKSKA ARPSSMEM
Subjt:  PVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSMEM

XP_004144346.1 putative ribosome biogenesis protein slx9-like [Cucumis sativus]

5.6e-72

93.67

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Query:  MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMG
        MGKPVSRSD+KSKAERKFEKKVQFYERVGETI TLNAQK+ITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA KQKPS+AELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSMEM
        TVLNHPVFQADPL+A+QLHLEGTQPIEEPKKK  NKNGSKKRKEKKSKASA+PSSMEM
Subjt:  TVLNHPVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSMEM

XP_038883686.1 putative ribosome biogenesis protein slx9-like isoform X1 [Benincasa hispida]

3.2e-67

90.51

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Query:  MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMG
        MGKPVSRSD KSKAERKFEKKVQFYERVGETI+TLNAQKTI+KKK++RRRKRDLKAFDLS LSEFLPGL APKQKPS+AE KLNCKSRLKF+LKERKQM 
Subjt:  MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSMEM
        TVLNHPVFQADPL+AI+LHLEGTQPIEEPKKK TNKNGSKKRKEKKS ASARPSSMEM
Subjt:  TVLNHPVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSMEM

XP_038900086.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida]

7.3e-72

95.57

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Query:  MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMG
        MGKPVSRSD KSKAERKFEKKVQFYERVGETI+TLNAQKTITKKK+HRRRKRDLKAFDLSTLSEFLPGLEAPKQKPS+AELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSMEM
        TVLNHPVFQADPL+AIQLHLEGTQPIEEPKKK TNKNGSKKRKEKKSKAS RPSSMEM
Subjt:  TVLNHPVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSMEM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L113 Uncharacterized protein

2.7e-72

93.67

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Query:  MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMG
        MGKPVSRSD+KSKAERKFEKKVQFYERVGETI TLNAQK+ITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA KQKPS+AELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSMEM
        TVLNHPVFQADPL+A+QLHLEGTQPIEEPKKK  NKNGSKKRKEKKSKASA+PSSMEM
Subjt:  TVLNHPVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSMEM

A0A5A7V4K7 Putative ribosome biogenesis protein slx9-like

5.3e-68

92.16

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Query:  SRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMGTVLNH
        ++SD+KSKAERKFEKKVQFYERVGE+IATLNAQK+ITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA KQKPS+AELKLNCKSRLKFILKERKQMGTVLNH
Subjt:  SRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMGTVLNH

Query:  PVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSMEM
        PVFQADPL+A+QLHLEGTQPIEEPKKK  NKNGSKKRKEKKSKA ARPSSMEM
Subjt:  PVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSMEM

A0A5D3BQL6 Putative ribosome biogenesis protein slx9-like

2.3e-71

93.04

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Query:  MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMG
        MGKPVSRSD+KSKAERKFEKKVQFYERVGE+IATLNAQK+ITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA KQKPS+AELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSMEM
        TVLNHPVFQADPL+A+QLHLEGTQP EEPKKK  NKNGSKKRKEKK KASARPSSMEM
Subjt:  TVLNHPVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSMEM

A0A6J1CZB1 putative ribosome biogenesis protein slx9-like isoform X2

1.9e-62

83.97

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Query:  MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMG
        MGKPVSRSD KSKAERKF+KKVQFYERVGET+  LNAQKTI+K    R RK+ LKAFDL+TLSEFLPGLEAPKQK S+AELK+NCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSM
        TVLNHP FQADPLKAI LHLE TQP+EEPKKKNTNKNGSKKRKEKK KASA P  M
Subjt:  TVLNHPVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSM

A0A6J1E5M8 putative ribosome biogenesis protein slx9-like

1.9e-62

84.18

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Query:  MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMG
        MGKP SRSD KSKAERKFEKK+QFYERVGETIATLNAQKTITKKK  RRRKRDLKAFDL+ LSEFLPGL+APKQK S  ELK+NCKSRLKF+LKE KQMG
Subjt:  MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSMEM
        TVLNHP FQADPL AI LHL+ TQP+EE KKK TN+NGSKKRKEKKSKA+A+PSSMEM
Subjt:  TVLNHPVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSMEM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G01640.1 unknown protein

6.0e-32

50.33

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Query:  MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA-PKQKPSSAELKLNCKSRLKFILKERKQM
        MGKP   S++ +K+++KFEKK+QFY +V +T+ +L+ QK I KKK  R R++ LKA+DL+ LSEFLP   A  K    + ELK+NCK R K +L E +++
Subjt:  MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA-PKQKPSSAELKLNCKSRLKFILKERKQM

Query:  GTVLNHPVFQADPLKAIQLHLEGTQ-PIEEPKKKNTNKNGSKKRKEKKSKASA
          VL+HP FQADP+ +I  HL   Q P+EE  KK TN NGSKKR +KK K  +
Subjt:  GTVLNHPVFQADPLKAIQLHLEGTQ-PIEEPKKKNTNKNGSKKRKEKKSKASA

AT2G01640.2 unknown protein

6.0e-32

50.33

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Query:  MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA-PKQKPSSAELKLNCKSRLKFILKERKQM
        MGKP   S++ +K+++KFEKK+QFY +V +T+ +L+ QK I KKK  R R++ LKA+DL+ LSEFLP   A  K    + ELK+NCK R K +L E +++
Subjt:  MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA-PKQKPSSAELKLNCKSRLKFILKERKQM

Query:  GTVLNHPVFQADPLKAIQLHLEGTQ-PIEEPKKKNTNKNGSKKRKEKKSKASA
          VL+HP FQADP+ +I  HL   Q P+EE  KK TN NGSKKR +KK K  +
Subjt:  GTVLNHPVFQADPLKAIQLHLEGTQ-PIEEPKKKNTNKNGSKKRKEKKSKASA

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGAAAACCAGTCTCTCGGTCGGATTTGAAATCTAAAGCTGAACGCAAATTTGAAAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTGCTACCTTAAATGC
TCAAAAAACTATTACTAAGAAGAAAAACCATCGAAGACGTAAAAGGGACTTGAAGGCTTTTGATCTTTCTACTCTGTCAGAGTTTCTTCCTGGATTGGAGGCGCCTAAAC
AAAAACCTTCCTCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAGTTTATATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTATTTCAGGCA
GACCCATTGAAAGCTATTCAACTACATTTAGAGGGCACACAACCAATTGAGGAACCAAAGAAAAAGAATACGAATAAAAATGGGAGCAAGAAAAGGAAAGAGAAGAAGTC
AAAAGCCTCTGCAAGACCTTCATCTATGGAGATGTGA

mRNA sequence

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TGGCGCTACAACACTAGGCCATCCGCGCTACAGCTCTAGGTGGTAATGGAAGAATGTCGGGGCCATCTTGTCAGATTCTGAATCTGGGTTTGAATCTAGGGCATGACGCT
ACAGCTCTAGGCAATCAGGGTTACTTTGCCCAATTAACTCGTTCCCCTTTTTTAGTGTATCAGCCCCTCGTTTTGTTTCAATCAACCGCAGCGCCCTCCCACCTTCAGCC
TTCCTACTCGGCGACCCACGCGACGCCTCTTACGAGCCACCAACGGCGTTGTAAGGCTGCCACACACTCCCTCTTCAGCGTGCAGCGGCGCCTGCGACCCACGACAAACG
CGCGAGGTTTATTCTCCGGCGAGCAGCTGCGGAACTCTGCAACGTCACCAGTTGCGGCAACAGTGACGCTTCTATCCAAGAACCTGACTCGTGGCGGTTCCCGGAGACGC
CTCCGTGTACAAACGGCGGTTTCTTCTTTCTTATTCCAACGACCACACGGCGGCAGCAGTAAACCAACGTGACCCACGCGATTTCGGCAGTTTACAGCTATTTTTCCTCA
TTCGGACAAGGTTTGGCTCTGAACCACTCCCACGGACTTTAGGTTACCGTTACTTACTCCCTATTCAAACACTAGTAGACAGCAAGGTCTAAGGCTGTTCTGCAGCGTTC
AGTAGGTCCAATATCTTGCAGATTTTCTCATACCCTATTTCATCGCCACATCTTGCCCTTTTCATCTATAAGGGAGTTGAGGTTGCCGATTTCCTTCAAGACTGAGTGCT
CAAGATCAGAAGTTCTCTATTTGAGCGACGGTGAGCAAATTCCTTTTTTTAATTCAAGTAATCAGAAAACTCGCAAGTTGTCATTATGGGAAAACCAGTCTCTCGGTCGG
ATTTGAAATCTAAAGCTGAACGCAAATTTGAAAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTGCTACCTTAAATGCTCAAAAAACTATTACTAAGAAGAAA
AACCATCGAAGACGTAAAAGGGACTTGAAGGCTTTTGATCTTTCTACTCTGTCAGAGTTTCTTCCTGGATTGGAGGCGCCTAAACAAAAACCTTCCTCAGCCGAGTTAAA
ACTAAATTGCAAGTCTAGGCTAAAGTTTATATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTATTTCAGGCAGACCCATTGAAAGCTATTCAACTAC
ATTTAGAGGGCACACAACCAATTGAGGAACCAAAGAAAAAGAATACGAATAAAAATGGGAGCAAGAAAAGGAAAGAGAAGAAGTCAAAAGCCTCTGCAAGACCTTCATCT
ATGGAGATGTGACTAATTTCTCATGGGCTTTCTTTTGCCACCTAAGCTGCTTGGTAAATACTTTCATTCTCATTTTAATTTGTGAAATTAACTTGTTTTTGTTATCATAA
ACAGTTGATCTCGATTGAGCTCTGAATTCCTTCTGGAATTGGATCCCAGTAGATGATTCTTCGTTTTTGAATTCCCATCTGGATATTCTGTTTGTAATCATATCCAGAAA
AAAAAGACAGGAAGAAATTTTGATCAACTTACTTTTCAAACTCTTTTAGATATTATAATTAATGTACAATTTATTTCACAAATATTGCGGTTTAACTCGCACGGTTATGA
ATTAAAACAATGCAATTTTGAAA

Protein sequence

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MGKPVSRSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMGTVLNHPVFQA
DPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSMEM

Lsi01G020360 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome