CuGenDBv2

Gene ID	Lsi01G020630
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	E3 ubiquitin-protein ligase CHFR
Genome location	chr01:28827833..28843660
RNA-Seq Expression	Lsi01G020630
Synteny	Lsi01G020630
Gene Ontology terms	NA
InterPro domains	IPR040909 - E3 ubiquitin-protein ligase CHFR, cysteine rich domain with multizinc binding

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004146401.2 E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis sativus]

1.1e-55

57.28

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Query:  LGCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKL
        LGCDRAFCGAYW+AQ  QRSD Y TC+PETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRF+NREI+   R+     E++  
Subjt:  LGCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKL

Query:  SIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHA
                       +  +  ++   F ++++ +                                T  Y  LLP DATERENCWYGYACRTQHHNEDHA
Subjt:  SIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHA

Query:  RKRNHVCRPTRSR
        RKRNHVCRPTRSR
Subjt:  RKRNHVCRPTRSR

XP_008442085.1 PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis melo]

7.4e-57

58.22

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Query:  LGCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKL
        LGCDRAFCGAYWQAQ  QRSD Y TC+PETFKPIS RTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREI+   R+     E++  
Subjt:  LGCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKL

Query:  SIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHA
                       +  +  ++   F ++++ +                                T  Y  LLPGDATERENCWYGYACRTQHHNEDHA
Subjt:  SIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHA

Query:  RKRNHVCRPTRSR
        RKRNHVCRPTRSR
Subjt:  RKRNHVCRPTRSR

XP_008442086.1 PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X2 [Cucumis melo]

7.4e-57

58.22

Show/hide

Query:  LGCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKL
        LGCDRAFCGAYWQAQ  QRSD Y TC+PETFKPIS RTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREI+   R+     E++  
Subjt:  LGCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKL

Query:  SIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHA
                       +  +  ++   F ++++ +                                T  Y  LLPGDATERENCWYGYACRTQHHNEDHA
Subjt:  SIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHA

Query:  RKRNHVCRPTRSR
        RKRNHVCRPTRSR
Subjt:  RKRNHVCRPTRSR

XP_031739669.1 E3 ubiquitin-protein ligase CHFR isoform X3 [Cucumis sativus]

1.1e-55

57.28

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Query:  LGCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKL
        LGCDRAFCGAYW+AQ  QRSD Y TC+PETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRF+NREI+   R+     E++  
Subjt:  LGCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKL

Query:  SIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHA
                       +  +  ++   F ++++ +                                T  Y  LLP DATERENCWYGYACRTQHHNEDHA
Subjt:  SIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHA

Query:  RKRNHVCRPTRSR
        RKRNHVCRPTRSR
Subjt:  RKRNHVCRPTRSR

XP_038887863.1 E3 ubiquitin-protein ligase CHFR [Benincasa hispida]

2.5e-57

59.15

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Query:  LGCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKL
        LGCDRAFCGAYWQAQ  QRSDTY TCNPET KPIS RTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREI+   R+     E++  
Subjt:  LGCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKL

Query:  SIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHA
               + + H+     +  ++   F ++++ +                                T  Y  LLPGDATERENCWYGYACRTQHHNEDHA
Subjt:  SIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHA

Query:  RKRNHVCRPTRSR
        RKRNHVCRPTRSR
Subjt:  RKRNHVCRPTRSR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B4G1 E3 ubiquitin-protein ligase CHFR isoform X1

3.6e-57

58.22

Show/hide

Query:  LGCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKL
        LGCDRAFCGAYWQAQ  QRSD Y TC+PETFKPIS RTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREI+   R+     E++  
Subjt:  LGCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKL

Query:  SIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHA
                       +  +  ++   F ++++ +                                T  Y  LLPGDATERENCWYGYACRTQHHNEDHA
Subjt:  SIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHA

Query:  RKRNHVCRPTRSR
        RKRNHVCRPTRSR
Subjt:  RKRNHVCRPTRSR

A0A1S3B4V7 E3 ubiquitin-protein ligase CHFR isoform X2

3.6e-57

58.22

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Query:  LGCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKL
        LGCDRAFCGAYWQAQ  QRSD Y TC+PETFKPIS RTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREI+   R+     E++  
Subjt:  LGCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKL

Query:  SIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHA
                       +  +  ++   F ++++ +                                T  Y  LLPGDATERENCWYGYACRTQHHNEDHA
Subjt:  SIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHA

Query:  RKRNHVCRPTRSR
        RKRNHVCRPTRSR
Subjt:  RKRNHVCRPTRSR

A0A6J1EYT0 E3 ubiquitin-protein ligase CHFR isoform X3

1.7e-54

56.81

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Query:  LGCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKL
        LGCDRAFCGAYW+AQ  QRS TY TCNPET KPIS RTISRIPQLTHENN+HEQDIT RCISQMGKTLQDVISEWIV+FNNREI+   R+     E++  
Subjt:  LGCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKL

Query:  SIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHA
               + + H+     +   +   F ++++ +                                T  Y  LLPGDATERENCWYGYACRTQHHNEDHA
Subjt:  SIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHA

Query:  RKRNHVCRPTRSR
        RKRNHVCRPTRSR
Subjt:  RKRNHVCRPTRSR

A0A6J1EYT3 E3 ubiquitin-protein ligase CHFR isoform X1

1.7e-54

56.81

Show/hide

Query:  LGCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKL
        LGCDRAFCGAYW+AQ  QRS TY TCNPET KPIS RTISRIPQLTHENN+HEQDIT RCISQMGKTLQDVISEWIV+FNNREI+   R+     E++  
Subjt:  LGCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKL

Query:  SIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHA
               + + H+     +   +   F ++++ +                                T  Y  LLPGDATERENCWYGYACRTQHHNEDHA
Subjt:  SIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHA

Query:  RKRNHVCRPTRSR
        RKRNHVCRPTRSR
Subjt:  RKRNHVCRPTRSR

A0A6J1F3R3 E3 ubiquitin-protein ligase CHFR isoform X2

1.7e-54

56.81

Show/hide

Query:  LGCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKL
        LGCDRAFCGAYW+AQ  QRS TY TCNPET KPIS RTISRIPQLTHENN+HEQDIT RCISQMGKTLQDVISEWIV+FNNREI+   R+     E++  
Subjt:  LGCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKL

Query:  SIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHA
               + + H+     +   +   F ++++ +                                T  Y  LLPGDATERENCWYGYACRTQHHNEDHA
Subjt:  SIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHA

Query:  RKRNHVCRPTRSR
        RKRNHVCRPTRSR
Subjt:  RKRNHVCRPTRSR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G47570.1 RING/U-box superfamily protein

3.9e-40

44.29

Show/hide

Query:  GCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKLS
        GCDR FCGAYW ++   +  +   C  ETF+PIS RTI+RIP +THE NRHEQDIT RCI+ M KT+ DV++EW+  FNNREI+   R+     E    +
Subjt:  GCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKLS

Query:  IAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHAR
        I  ST           +   K       +F   LP  + H                                LP D   RE+CWYGYACRTQHHNEDHAR
Subjt:  IAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHAR

Query:  KRNHVCRPTR
        KRNHVCRPTR
Subjt:  KRNHVCRPTR

AT1G47570.2 RING/U-box superfamily protein

3.9e-40

44.29

Show/hide

Query:  GCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKLS
        GCDR FCGAYW ++   +  +   C  ETF+PIS RTI+RIP +THE NRHEQDIT RCI+ M KT+ DV++EW+  FNNREI+   R+     E    +
Subjt:  GCDRAFCGAYWQAQGFQRSDTYTTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKLS

Query:  IAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHAR
        I  ST           +   K       +F   LP  + H                                LP D   RE+CWYGYACRTQHHNEDHAR
Subjt:  IAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYGLLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHAR

Query:  KRNHVCRPTR
        KRNHVCRPTR
Subjt:  KRNHVCRPTR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGTTCAGTACCTATTGCCTATAGGGAAATCTTATGGGAGTTGGTCCGAGGGGTGGAGGGCACTGGCTTCTGTTGGAGTCAGTAAGGTTGGTGTCGAGTCCTTTAAAGT
TGTTTCGGTCCCTAAAAGGAAGAAGAGCAATGGGAAATCTTATGGGAGTTGGTCCGAGGGGTGGAGGGCACTGGCTTCTGTTGGAGTCAGTAAGGTTGGTGTCGAGTCCT
TTAAAGTTGTTTCGGTCCCTAAAAGGAAGAAGAGCAATGGTTTAGGTTGTGATAGAGCATTTTGTGGTGCATATTGGCAAGCTCAGGGGTTTCAAAGAAGTGATACTTAC
ACCACTTGCAATCCCGAGACTTTTAAACCAATCTCTCGACGTACCATCTCAAGAATTCCACAGTTGACACATGAAAATAATCGGCATGAACAGGATATTACAGGGAGGTG
CATTAGTCAGATGGGTAAAACATTGCAGGATGTCATCTCGGAATGGATTGTAAGGTTTAACAACAGAGAAATTGAATTCCCACCTAGACTAAAGAGCAAAAGGACTGAAA
TCTTAAAACTTAGCATTGCTGGATCAACGAAAAGCAAGAAATTCCACCTAGTAACAATGGAAGAGAAACCGCAGAAAAGATCCTCCATTTTTGCAATGTTCTTCTATGGG
CTTCTGCCACTGGCAAAAAGGCATTTGAATGGGCATTTTCTAAACAATGGAAGTGCATCGAACTCAAATGCCTCTAAATCATGCAGAGATGATAACTGCACAGACGCATA
TTTGCAACTTCTGCCAGGAGATGCAACCGAAAGGGAAAATTGTTGGTATGGATATGCATGTCGGACTCAGCACCACAACGAAGACCACGCTCGCAAGAGAAATCATGTTT
GTCGTCCCACCCGATCCCGATAA

mRNA sequence

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Protein sequence

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MVQYLLPIGKSYGSWSEGWRALASVGVSKVGVESFKVVSVPKRKKSNGKSYGSWSEGWRALASVGVSKVGVESFKVVSVPKRKKSNGLGCDRAFCGAYWQAQGFQRSDTY
TTCNPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFNNREIEFPPRLKSKRTEILKLSIAGSTKSKKFHLVTMEEKPQKRSSIFAMFFYG
LLPLAKRHLNGHFLNNGSASNSNASKSCRDDNCTDAYLQLLPGDATERENCWYGYACRTQHHNEDHARKRNHVCRPTRSR

Lsi01G020630 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome