CuGenDBv2

Gene ID	Lsi01G020640
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	E3 ubiquitin-protein ligase CHFR isoform X1
Genome location	chr01:28861192..28883630
RNA-Seq Expression	Lsi01G020640
Synteny	Lsi01G020640
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004146401.2 E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis sativus]

6.0e-72

83.64

Show/hide

Query:  MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP
        MAEIGECSASNSS+ENWAKLIP DK+YADIEINSDET+IFSETKSTSVEKHEWCKITRN DL +ATLQNRSSNAIIVD TLVQKD+TTFI CGSEIVSGP
Subjt:  MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP

Query:  VRDGHLSYKFEMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF
        VRDG+LS+KFEMLSDS++CKGLK            IS+DVEHAKCSICLNIWHDVVTAAPCFHNF
Subjt:  VRDGHLSYKFEMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF

XP_008442085.1 PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis melo]

3.5e-72

83.64

Show/hide

Query:  MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP
        MAEIGECSASNSS+ENWAKLIP DK+Y DIEINSDET+IFSETKSTSVEKHEWCKITRN DL +ATLQNRSSNAIIVD TLVQKD+TTFI CGSEIVSGP
Subjt:  MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP

Query:  VRDGHLSYKFEMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF
        VRDGHLS+KFEM SDS++CKGLK      V+    IS+DVEHAKCSICLNIWHDVVTAAPCFHNF
Subjt:  VRDGHLSYKFEMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF

XP_016899584.1 PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X3 [Cucumis melo]

3.5e-72

83.64

Show/hide

Query:  MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP
        MAEIGECSASNSS+ENWAKLIP DK+Y DIEINSDET+IFSETKSTSVEKHEWCKITRN DL +ATLQNRSSNAIIVD TLVQKD+TTFI CGSEIVSGP
Subjt:  MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP

Query:  VRDGHLSYKFEMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF
        VRDGHLS+KFEM SDS++CKGLK      V+    IS+DVEHAKCSICLNIWHDVVTAAPCFHNF
Subjt:  VRDGHLSYKFEMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF

XP_031739668.1 E3 ubiquitin-protein ligase CHFR isoform X2 [Cucumis sativus]

6.0e-72

83.64

Show/hide

Query:  MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP
        MAEIGECSASNSS+ENWAKLIP DK+YADIEINSDET+IFSETKSTSVEKHEWCKITRN DL +ATLQNRSSNAIIVD TLVQKD+TTFI CGSEIVSGP
Subjt:  MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP

Query:  VRDGHLSYKFEMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF
        VRDG+LS+KFEMLSDS++CKGLK            IS+DVEHAKCSICLNIWHDVVTAAPCFHNF
Subjt:  VRDGHLSYKFEMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF

XP_038887863.1 E3 ubiquitin-protein ligase CHFR [Benincasa hispida]

2.0e-72

85.45

Show/hide

Query:  MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP
        MAEIGECSA+NSSIE WAKLIPPDKIYADIEINSDETII+SETKSTSVEK EWCKITRN DL SATLQNRSSNAIIVD TLVQKDDTTFI CGSEI+SGP
Subjt:  MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP

Query:  VRDGHLSYKFEMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF
        VRDGHLSYKF+MLS SRICKGLK            IS+DVEHAKCSICLNIWHDVVTAAPCFHNF
Subjt:  VRDGHLSYKFEMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYR0 RING-type domain-containing protein

2.9e-72

83.64

Show/hide

Query:  MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP
        MAEIGECSASNSS+ENWAKLIP DK+YADIEINSDET+IFSETKSTSVEKHEWCKITRN DL +ATLQNRSSNAIIVD TLVQKD+TTFI CGSEIVSGP
Subjt:  MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP

Query:  VRDGHLSYKFEMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF
        VRDG+LS+KFEMLSDS++CKGLK            IS+DVEHAKCSICLNIWHDVVTAAPCFHNF
Subjt:  VRDGHLSYKFEMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF

A0A1S3B4G1 E3 ubiquitin-protein ligase CHFR isoform X1

1.7e-72

83.64

Show/hide

Query:  MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP
        MAEIGECSASNSS+ENWAKLIP DK+Y DIEINSDET+IFSETKSTSVEKHEWCKITRN DL +ATLQNRSSNAIIVD TLVQKD+TTFI CGSEIVSGP
Subjt:  MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP

Query:  VRDGHLSYKFEMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF
        VRDGHLS+KFEM SDS++CKGLK      V+    IS+DVEHAKCSICLNIWHDVVTAAPCFHNF
Subjt:  VRDGHLSYKFEMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF

A0A1S3B4V7 E3 ubiquitin-protein ligase CHFR isoform X2

4.9e-72

83.03

Show/hide

Query:  MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP
        MAEIGECSASNSS+ENWAKLIP DK+Y DIEINSDET+IFSETKSTSVEKHEWCKITRN DL +ATLQNRSSNAIIVD TLVQKD+TTFI CGSEIVSGP
Subjt:  MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP

Query:  VRDGHLSYKFEMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF
        VRDGHLS+KFEM SDS++CKGLK            IS+DVEHAKCSICLNIWHDVVTAAPCFHNF
Subjt:  VRDGHLSYKFEMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF

A0A1S4DUC8 E3 ubiquitin-protein ligase CHFR isoform X3

1.7e-72

83.64

Show/hide

Query:  MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP
        MAEIGECSASNSS+ENWAKLIP DK+Y DIEINSDET+IFSETKSTSVEKHEWCKITRN DL +ATLQNRSSNAIIVD TLVQKD+TTFI CGSEIVSGP
Subjt:  MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP

Query:  VRDGHLSYKFEMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF
        VRDGHLS+KFEM SDS++CKGLK      V+    IS+DVEHAKCSICLNIWHDVVTAAPCFHNF
Subjt:  VRDGHLSYKFEMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF

A0A6J1HW48 E3 ubiquitin-protein ligase CHFR isoform X1

1.4e-66

78.79

Show/hide

Query:  MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP
        MAE+GECSASNSSI+NWAKLI  DK YADIEINSDE +IFSETKS+SV+K+EWCKITRN D+ S TLQNRS NAI+VD TLVQKDD  FI CGSEIVSGP
Subjt:  MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP

Query:  VRDGHLSYKFEMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF
        V+DGHLSYKFE+LSDS ICKGLK            ISMDVEHAKCSICLNIWHDVVTAAPCFHNF
Subjt:  VRDGHLSYKFEMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G47570.1 RING/U-box superfamily protein

1.3e-40

50.9

Show/hide

Query:  AEIGECSASNSSIEN-WAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP
        AE G+ S S  S ++ WAKL+P D  ++DIEI  ++ +I SE K +S+EKHEWC+IT+N    SAT+ N+SS+AI+VD  +V KD    I  GSEIV GP
Subjt:  AEIGECSASNSSIEN-WAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGP

Query:  VRDGHLSYKFEML--SDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF
           G+L Y+F ++   +SR              + +QIS+D EHAKCSICLNIWHDVVTAAPC HNF
Subjt:  VRDGHLSYKFEML--SDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF

AT1G47570.2 RING/U-box superfamily protein

3.3e-36

51.02

Show/hide

Query:  IPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGPVRDGHLSYKFEML--SDSRI
        +P D  ++DIEI  ++ +I SE K +S+EKHEWC+IT+N    SAT+ N+SS+AI+VD  +V KD    I  GSEIV GP   G+L Y+F ++   +SR 
Subjt:  IPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGPVRDGHLSYKFEML--SDSRI

Query:  CKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF
                     + +QIS+D EHAKCSICLNIWHDVVTAAPC HNF
Subjt:  CKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGGAAATTGGAGAGTGCTCTGCTTCAAATTCCTCCATAGAAAACTGGGCGAAGCTAATTCCACCTGATAAAATATATGCAGATATTGAGATAAACTCTGATGAGAC
CATTATCTTCTCGGAGACAAAATCCACATCTGTTGAAAAACACGAATGGTGCAAAATCACAAGGAATCCAGATCTAAAGTCTGCCACTCTGCAGAATAGAAGTTCAAATG
CAATAATTGTTGATGGGACTCTTGTTCAAAAGGATGACACTACTTTCATCACGTGTGGAAGCGAAATTGTTTCGGGTCCGGTCCGGGATGGGCATTTGAGCTATAAATTT
GAAATGTTGTCAGACTCAAGAATATGCAAGGGCTTAAAGAAATACTCAATTTTAGCCGTTGTTGAATTTGTCCAGATTTCTATGGATGTTGAGCATGCAAAATGCAGTAT
TTGCTTAAACATTTGGCATGATGTTGTCACAGCCGCTCCTTGCTTTCACAACTTTTGGTGGGCCTAT

mRNA sequence

Show/hide mRNA sequence

GAGAATGAGAGAGTGAGACAACGACAAATATGAGAGGGATATGTGAGAGAGGAGAGTGAGTTGTAAAAGAGAAGAGAGTGAGAGCCCATTTCTTGTGTGCAAGTATCAGC
CATCAGTCGCTCTCTTCCCCTTCTCCTTCTCCTACTGGCGGTTATGGCGGAAATTGGAGAGTGCTCTGCTTCAAATTCCTCCATAGAAAACTGGGCGAAGCTAATTCCAC
CTGATAAAATATATGCAGATATTGAGATAAACTCTGATGAGACCATTATCTTCTCGGAGACAAAATCCACATCTGTTGAAAAACACGAATGGTGCAAAATCACAAGGAAT
CCAGATCTAAAGTCTGCCACTCTGCAGAATAGAAGTTCAAATGCAATAATTGTTGATGGGACTCTTGTTCAAAAGGATGACACTACTTTCATCACGTGTGGAAGCGAAAT
TGTTTCGGGTCCGGTCCGGGATGGGCATTTGAGCTATAAATTTGAAATGTTGTCAGACTCAAGAATATGCAAGGGCTTAAAGAAATACTCAATTTTAGCCGTTGTTGAAT
TTGTCCAGATTTCTATGGATGTTGAGCATGCAAAATGCAGTATTTGCTTAAACATTTGGCATGATGTTGTCACAGCCGCTCCTTGCTTTCACAACTTTTGGTGGGCCTAT

Protein sequence

Show/hide protein sequence

MAEIGECSASNSSIENWAKLIPPDKIYADIEINSDETIIFSETKSTSVEKHEWCKITRNPDLKSATLQNRSSNAIIVDGTLVQKDDTTFITCGSEIVSGPVRDGHLSYKF
EMLSDSRICKGLKKYSILAVVEFVQISMDVEHAKCSICLNIWHDVVTAAPCFHNFWWAY

Lsi01G020640 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome