; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G020710 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G020710
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSWIB domain-containing protein
Genome locationchr01:29127853..29136689
RNA-Seq ExpressionLsi01G020710
SyntenyLsi01G020710
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN55149.2 hypothetical protein Csa_012337 [Cucumis sativus]2.1e-4080Show/hide
Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV
        M  KRMKMAITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFKCVWSYIKT NLQ               DPTNKNVVICDEKLKSILLGKPKV+L 
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV

Query:  ELPELIKLHFPKNPK
        ELP LIKLHFPKN K
Subjt:  ELPELIKLHFPKNPK

XP_008449303.1 PREDICTED: upstream activation factor subunit spp27 [Cucumis melo]7.1e-4179.13Show/hide
Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV
        M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKT NLQ               DPTNKNVV+CDEKLKSILLGKPKV+L 
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV

Query:  ELPELIKLHFPKNPK
        ELP LIKLHFPKNPK
Subjt:  ELPELIKLHFPKNPK

XP_022928748.1 upstream activation factor subunit UAF30 [Cucurbita moschata]6.0e-4079.13Show/hide
Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV
        MLP+RMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIKT NLQ               DPTNKNVVICDEKLKSILLGK K++L 
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV

Query:  ELPELIKLHFPKNPK
        ELP LIKLHFPKNPK
Subjt:  ELPELIKLHFPKNPK

XP_031739586.1 upstream activation factor subunit spp27 [Cucumis sativus]2.1e-4080Show/hide
Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV
        M  KRMKMAITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFKCVWSYIKT NLQ               DPTNKNVVICDEKLKSILLGKPKV+L 
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV

Query:  ELPELIKLHFPKNPK
        ELP LIKLHFPKN K
Subjt:  ELPELIKLHFPKNPK

XP_038882021.1 upstream activation factor subunit spp27 [Benincasa hispida]2.0e-4383.48Show/hide
Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV
        MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKT NLQ               DPTNKNVVICDEKLKSILLGKPKV+L 
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV

Query:  ELPELIKLHFPKNPK
        ELP LIKLHFPKNPK
Subjt:  ELPELIKLHFPKNPK

TrEMBL top hitse value%identityAlignment
A0A0A0L2E1 SWIB domain-containing protein1.0e-4080Show/hide
Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV
        M  KRMKMAITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFKCVWSYIKT NLQ               DPTNKNVVICDEKLKSILLGKPKV+L 
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV

Query:  ELPELIKLHFPKNPK
        ELP LIKLHFPKN K
Subjt:  ELPELIKLHFPKNPK

A0A151SBL4 Upstream activation factor subunit UAF303.8e-4077.39Show/hide
Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV
        MLP+RMK AITDNPKKLANLIDL+NLPSTLREFVGQSQISRLGCFKCVWSYIKT NLQ               DP NKNVV CDEKLKSILLGKP+VDL 
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV

Query:  ELPELIKLHFPKNPK
        ELP LIK+HFPK PK
Subjt:  ELPELIKLHFPKNPK

A0A1S3BL41 upstream activation factor subunit spp273.4e-4179.13Show/hide
Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV
        M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKT NLQ               DPTNKNVV+CDEKLKSILLGKPKV+L 
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV

Query:  ELPELIKLHFPKNPK
        ELP LIKLHFPKNPK
Subjt:  ELPELIKLHFPKNPK

A0A6J1ELR1 upstream activation factor subunit UAF302.9e-4079.13Show/hide
Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV
        MLP+RMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIKT NLQ               DPTNKNVVICDEKLKSILLGK K++L 
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV

Query:  ELPELIKLHFPKNPK
        ELP LIKLHFPKNPK
Subjt:  ELPELIKLHFPKNPK

A0A6J1HY33 upstream activation factor subunit UAF30 isoform X25.0e-4079.13Show/hide
Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV
        MLP+RMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIKT NLQ               DPTNKNVVICDEKL+SILLGK KV+L 
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV

Query:  ELPELIKLHFPKNPK
        ELP LIKLHFPKNPK
Subjt:  ELPELIKLHFPKNPK

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp279.4e-0435.82Show/hide
Query:  VNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSI
        + L   L EF+G  Q+SR    K +W YIK  +LQ               DP +K  ++CD+KLKS+
Subjt:  VNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSI

Q08747 Upstream activation factor subunit UAF305.5e-0425Show/hide
Query:  VNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPKWNFNKNSK
        V L  +L   +G+ +++R    + +W+YIK  NLQ               +P NK  ++CDEKL+ ++LGK   ++ E+ +++  H  +  K   +    
Subjt:  VNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPKWNFNKNSK

Query:  LIRFIINTEEKQINTEEKQQTRQV
        LI+ +   E+  ++  E+  T+ +
Subjt:  LIRFIINTEEKQINTEEKQQTRQV

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein1.5e-0936.9Show/hide
Query:  LREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKN
        L  F G+ +++R    K VW Y+K  NLQ               +P NK  + CD+KLK+I  GK KV + E+ +L+  HFPK+
Subjt:  LREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKN

AT2G35605.1 SWIB/MDM2 domain superfamily protein2.1e-1134.04Show/hide
Query:  LIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKN
        ++ +V +   L  F+G++++SR    K +W YIK  NLQ               +P NK  ++CDE+LK+I  GK  V  +E+ +L+  HFPK+
Subjt:  LIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKN

AT4G26810.1 SWIB/MDM2 domain superfamily protein4.9e-4071.67Show/hide
Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV
        MLP+R+K AITDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF  VWSYIKT NLQ               DP NKNVVICDEKLKSILLGK +V+LV
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV

Query:  ELPELIKLHFPKNPKWNFNK
        +LP LIKLHFPK  K N  K
Subjt:  ELPELIKLHFPKNPKWNFNK

AT4G26810.2 SWIB/MDM2 domain superfamily protein4.9e-4071.67Show/hide
Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV
        MLP+R+K AITDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF  VWSYIKT NLQ               DP NKNVVICDEKLKSILLGK +V+LV
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLV

Query:  ELPELIKLHFPKNPKWNFNK
        +LP LIKLHFPK  K N  K
Subjt:  ELPELIKLHFPKNPKWNFNK

AT4G34290.1 SWIB/MDM2 domain superfamily protein4.9e-0837.04Show/hide
Query:  LREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHF
        +++ VG  +I R    K +W+YIK  +LQ               DP NK  ++CDEKLK I  GK +V  +E+ +LI  HF
Subjt:  LREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCCAAAACGGATGAAGATGGCCATTACAGATAACCCAAAGAAGCTTGCCAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTC
CCAAATTTCTCGTCTGGGCTGTTTCAAGTGTGTGTGGTCATATATCAAAACCAAAAATCTTCAGATGCATATTGAATCTGCCGCTATCAACCTGACAGAGACCTCCCTTG
ATCCGACCAACAAGAATGTGGTAATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGCCCAAGGTTGATCTAGTCGAACTTCCTGAACTGATTAAATTACATTTT
CCCAAAAATCCCAAATGGAACTTTAACAAAAATTCAAAACTGATCCGTTTTATAATCAACACAGAAGAGAAGCAGATCAACACAGAAGAGAAGCAGCAAACAAGGCAAGT
GTTTGATGTCTTCTTAAGTGGCCTTCTATCATTAGGAAGCCACCATATATCTTCTTTTGGCTCATCAAAGCCCATGTACAATCTTACCCCAAAATCCAAGATCCGACGAC
TTGTAGGGGCTTTCGGCGGCAGACGACAAGATCAACGGTGGCCAAAGAGACGAACGGACAGCCTAGACGATTGCGAAGAAACCAACGGCCTAGCGGCAGTGAGTGCTATG
mRNA sequenceShow/hide mRNA sequence
AAAAAAGAAAAGAAAAAAAAATAAAATATATATATATATATATATACAAATAGTTATATATAGTTTTGGTATTTAAACCGGCCAAATTCTATACACATTCTTATGCACTC
GCAAACTCACAGTTGCAAAGAATTCGAGCGCTAAGTATTGGACACGCAAACAAAACTAACCTTCTTCTCCCTCTTACCAAGCCCTAATTCGCTTTCAACTTTCATCCCCT
AGAGGTTTTTCTTCTCCCTTTTCTCAGTGTAGGAGGAAGCAAACTAGTTGTGCAGAAAAATGTTGCCAAAACGGATGAAGATGGCCATTACAGATAACCCAAAGAAGCTT
GCCAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTGGGCTGTTTCAAGTGTGTGTGGTCATATATCAAAAC
CAAAAATCTTCAGATGCATATTGAATCTGCCGCTATCAACCTGACAGAGACCTCCCTTGATCCGACCAACAAGAATGTGGTAATTTGTGATGAGAAGTTAAAGAGTATAT
TGCTAGGCAAGCCCAAGGTTGATCTAGTCGAACTTCCTGAACTGATTAAATTACATTTTCCCAAAAATCCCAAATGGAACTTTAACAAAAATTCAAAACTGATCCGTTTT
ATAATCAACACAGAAGAGAAGCAGATCAACACAGAAGAGAAGCAGCAAACAAGGCAAGTGTTTGATGTCTTCTTAAGTGGCCTTCTATCATTAGGAAGCCACCATATATC
TTCTTTTGGCTCATCAAAGCCCATGTACAATCTTACCCCAAAATCCAAGATCCGACGACTTGTAGGGGCTTTCGGCGGCAGACGACAAGATCAACGGTGGCCAAAGAGAC
GAACGGACAGCCTAGACGATTGCGAAGAAACCAACGGCCTAGCGGCAGTGAGTGCTATG
Protein sequenceShow/hide protein sequence
MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQMHIESAAINLTETSLDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHF
PKNPKWNFNKNSKLIRFIINTEEKQINTEEKQQTRQVFDVFLSGLLSLGSHHISSFGSSKPMYNLTPKSKIRRLVGAFGGRRQDQRWPKRRTDSLDDCEETNGLAAVSAM