; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G020820 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G020820
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptioncell division control protein 48 homolog C-like
Genome locationchr01:29353108..29359551
RNA-Seq ExpressionLsi01G020820
SyntenyLsi01G020820
Gene Ontology termsNA
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_009788838.1 PREDICTED: cell division control protein 48 homolog C-like [Nicotiana sylvestris]1.4e-0732.91Show/hide
Query:  TSKDVDKQNSYSSSR------GFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE-----------------------IDK
        T+   DK+NS + S       G+VLV+GATN+ D I+  LR    F +EI +    EN RL+ILS++T  L +E                        +K
Subjt:  TSKDVDKQNSYSSSR------GFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE-----------------------IDK

Query:  AVDVAMRRIFDKKERDLPSLVVYVEQGWKECYSLDEKMPI-ITMTNFELLALWMQDTS
        A ++AM+RI D ++ +L   +V  E+ W++ +S DE   + I M +FE  A  +Q +S
Subjt:  AVDVAMRRIFDKKERDLPSLVVYVEQGWKECYSLDEKMPI-ITMTNFELLALWMQDTS

XP_010251848.1 PREDICTED: cell division control protein 48 homolog C [Nelumbo nucifera]1.8e-0733.33Show/hide
Query:  DVDKQNSYSSSR-GFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE-----------------------IDKAVDVAMRR
        DVD  +  S  R G+VLV+GATN+ D ++  LR    F +EI +    EN R+EILS++T  L LE                        +KA ++AM+R
Subjt:  DVDKQNSYSSSR-GFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE-----------------------IDKAVDVAMRR

Query:  IFDKKERDL---PSLVVYVEQGWKECYSLDE-KMPIITMTNFELLALWMQDTS
        I D+++ +L   P    + E+ W++ ++ +E +M  ITM +FE  A  +Q +S
Subjt:  IFDKKERDL---PSLVVYVEQGWKECYSLDE-KMPIITMTNFELLALWMQDTS

XP_016514536.1 PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Nicotiana tabacum]1.4e-0732.91Show/hide
Query:  TSKDVDKQNSYSSSR------GFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE-----------------------IDK
        T+   DK+NS + S       G+VLV+GATN+ D I+  LR    F +EI +    EN RL+ILS++T  L +E                        +K
Subjt:  TSKDVDKQNSYSSSR------GFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE-----------------------IDK

Query:  AVDVAMRRIFDKKERDLPSLVVYVEQGWKECYSLDEKMPI-ITMTNFELLALWMQDTS
        A ++AM+RI D ++ +L   +V  E+ W++ +S DE   + I M +FE  A  +Q +S
Subjt:  AVDVAMRRIFDKKERDLPSLVVYVEQGWKECYSLDEKMPI-ITMTNFELLALWMQDTS

XP_027158788.1 cell division control protein 48 homolog C [Coffea eugenioides]3.0e-0733.55Show/hide
Query:  DVDKQNSYSSSRGFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE-----------------------IDKAVDVAMRRI
        + D +NS  +  G+VLV+GATN+ D ++S LR    F +EI +    E  R+EILS++T+ L +E                        +KA ++AM+RI
Subjt:  DVDKQNSYSSSRGFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE-----------------------IDKAVDVAMRRI

Query:  FDKKERDLPSLVV---YVEQGWKECYSLDEKMPI-ITMTNFELLALWMQDTS
         D ++ +L    V   Y E+ WK  +SL+E   + ITM +FE  A  +Q +S
Subjt:  FDKKERDLPSLVV---YVEQGWKECYSLDEKMPI-ITMTNFELLALWMQDTS

XP_027932318.1 cell division control protein 48 homolog C [Vigna unguiculata]3.0e-0737.12Show/hide
Query:  SSSRGFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE-----------------------IDKAVDVAMRRIFDKKERDL
        S S G+VLV+GATN+ D I+  LR    F +EI IC   E+ R EILS++T+ L LE                       +DKA ++AM+RI D++ R+L
Subjt:  SSSRGFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE-----------------------IDKAVDVAMRRIFDKKERDL

Query:  -PSLVVYVEQGWKECYSLDEKMPI-ITMTNFE
           L    E  W+E +S +E   + I M++FE
Subjt:  -PSLVVYVEQGWKECYSLDEKMPI-ITMTNFE

TrEMBL top hitse value%identityAlignment
A0A1S4DM89 cell division control protein 48 homolog C-like isoform X16.6e-0832.91Show/hide
Query:  TSKDVDKQNSYSSSR------GFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE-----------------------IDK
        T+   DK+NS + S       G+VLV+GATN+ D I+  LR    F +EI +    EN RL+ILS++T  L +E                        +K
Subjt:  TSKDVDKQNSYSSSR------GFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE-----------------------IDK

Query:  AVDVAMRRIFDKKERDLPSLVVYVEQGWKECYSLDEKMPI-ITMTNFELLALWMQDTS
        A ++AM+RI D ++ +L   +V  E+ W++ +S DE   + I M +FE  A  +Q +S
Subjt:  AVDVAMRRIFDKKERDLPSLVVYVEQGWKECYSLDEKMPI-ITMTNFELLALWMQDTS

A0A1S4DMA3 cell division control protein 48 homolog C-like isoform X26.6e-0832.91Show/hide
Query:  TSKDVDKQNSYSSSR------GFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE-----------------------IDK
        T+   DK+NS + S       G+VLV+GATN+ D I+  LR    F +EI +    EN RL+ILS++T  L +E                        +K
Subjt:  TSKDVDKQNSYSSSR------GFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE-----------------------IDK

Query:  AVDVAMRRIFDKKERDLPSLVVYVEQGWKECYSLDEKMPI-ITMTNFELLALWMQDTS
        A ++AM+RI D ++ +L   +V  E+ W++ +S DE   + I M +FE  A  +Q +S
Subjt:  AVDVAMRRIFDKKERDLPSLVVYVEQGWKECYSLDEKMPI-ITMTNFELLALWMQDTS

A0A1U7XD87 cell division control protein 48 homolog C-like6.6e-0832.91Show/hide
Query:  TSKDVDKQNSYSSSR------GFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE-----------------------IDK
        T+   DK+NS + S       G+VLV+GATN+ D I+  LR    F +EI +    EN RL+ILS++T  L +E                        +K
Subjt:  TSKDVDKQNSYSSSR------GFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE-----------------------IDK

Query:  AVDVAMRRIFDKKERDLPSLVVYVEQGWKECYSLDEKMPI-ITMTNFELLALWMQDTS
        A ++AM+RI D ++ +L   +V  E+ W++ +S DE   + I M +FE  A  +Q +S
Subjt:  AVDVAMRRIFDKKERDLPSLVVYVEQGWKECYSLDEKMPI-ITMTNFELLALWMQDTS

A0A1U7ZSM6 cell division control protein 48 homolog C8.6e-0833.33Show/hide
Query:  DVDKQNSYSSSR-GFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE-----------------------IDKAVDVAMRR
        DVD  +  S  R G+VLV+GATN+ D ++  LR    F +EI +    EN R+EILS++T  L LE                        +KA ++AM+R
Subjt:  DVDKQNSYSSSR-GFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE-----------------------IDKAVDVAMRR

Query:  IFDKKERDL---PSLVVYVEQGWKECYSLDE-KMPIITMTNFELLALWMQDTS
        I D+++ +L   P    + E+ W++ ++ +E +M  ITM +FE  A  +Q +S
Subjt:  IFDKKERDL---PSLVVYVEQGWKECYSLDE-KMPIITMTNFELLALWMQDTS

A0A4D6KPE9 Ribosome biogenesis ATPase1.5e-0737.12Show/hide
Query:  SSSRGFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE-----------------------IDKAVDVAMRRIFDKKERDL
        S S G+VLV+GATN+ D I+  LR    F +EI IC   E+ R EILS++T+ L LE                       +DKA ++AM+RI D++ R+L
Subjt:  SSSRGFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE-----------------------IDKAVDVAMRRIFDKKERDL

Query:  -PSLVVYVEQGWKECYSLDEKMPI-ITMTNFE
           L    E  W+E +S +E   + I M++FE
Subjt:  -PSLVVYVEQGWKECYSLDEKMPI-ITMTNFE

SwissProt top hitse value%identityAlignment
Q54SY2 Putative ribosome biogenesis ATPase nvl5.5e-0434.78Show/hide
Query:  TTSKDVDKQNSYSSSRGFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE
        T S + +KQ      +G V+V+GATN+ + +++ LR+   F +EI +    +  R +IL +IT+K+ LE
Subjt:  TTSKDVDKQNSYSSSRGFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE

Q9SS94 Cell division control protein 48 homolog C2.2e-0545.9Show/hide
Query:  QNSYSSSRGFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE
        +N+  SS GFVLV+GATN+ D ++  LR +  F  EI +    E+ R EILS++  KL LE
Subjt:  QNSYSSSRGFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE

Arabidopsis top hitse value%identityAlignment
AT3G01610.1 cell division cycle 48C1.6e-0645.9Show/hide
Query:  QNSYSSSRGFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE
        +N+  SS GFVLV+GATN+ D ++  LR +  F  EI +    E+ R EILS++  KL LE
Subjt:  QNSYSSSRGFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLSLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGAAGGTTCAAAATCTTCAAGGAAATGTCAGTCTTCTCCAATAATTATTCTGAATAATTTCAAGATCTATAGATGTGGTAGGATTCGTCTGTCTGTGCAT
ATGAATCCTACCACATCTAAAGATGTGGATAAACAAAATTCATATTCTAGTTCTAGAGGTTTTGTCCTTGTGGTTGGAGCAACCAACAAACTAGATAGGATTGAA
TCGACATTAAGGGTAACCAAGTATTTTACTCAAGAGATTGAAATTTGTTTTCTATATGAAAATTTTAGGCTAGAAATACTTTCGATCATTACTAACAAATTAAGT
CTTGAAATCGACAAAGCTGTTGATGTCGCGATGAGGAGAATATTTGATAAAAAAGAACGTGATTTGCCTTCATTGGTGGTATACGTGGAGCAGGGGTGGAAGGAA
TGCTACTCGCTTGATGAGAAGATGCCTATCATAACCATGACTAACTTTGAGTTGCTCGCTTTATGGATGCAGGACACTTCTATTCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGAAGGTTCAAAATCTTCAAGGAAATGTCAGTCTTCTCCAATAATTATTCTGAATAATTTCAAGATCTATAGATGTGGTAGGATTCGTCTGTCTGTGCAT
ATGAATCCTACCACATCTAAAGATGTGGATAAACAAAATTCATATTCTAGTTCTAGAGGTTTTGTCCTTGTGGTTGGAGCAACCAACAAACTAGATAGGATTGAA
TCGACATTAAGGGTAACCAAGTATTTTACTCAAGAGATTGAAATTTGTTTTCTATATGAAAATTTTAGGCTAGAAATACTTTCGATCATTACTAACAAATTAAGT
CTTGAAATCGACAAAGCTGTTGATGTCGCGATGAGGAGAATATTTGATAAAAAAGAACGTGATTTGCCTTCATTGGTGGTATACGTGGAGCAGGGGTGGAAGGAA
TGCTACTCGCTTGATGAGAAGATGCCTATCATAACCATGACTAACTTTGAGTTGCTCGCTTTATGGATGCAGGACACTTCTATTCTATAA
Protein sequenceShow/hide protein sequence
MAEGSKSSRKCQSSPIIILNNFKIYRCGRIRLSVHMNPTTSKDVDKQNSYSSSRGFVLVVGATNKLDRIESTLRVTKYFTQEIEICFLYENFRLEILSIITNKLS
LEIDKAVDVAMRRIFDKKERDLPSLVVYVEQGWKECYSLDEKMPIITMTNFELLALWMQDTSIL