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Lsi02G000020 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G000020
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionHomeobox protein knotted-1-like 1
Genome locationchr02:7024..10735
RNA-Seq ExpressionLsi02G000020
SyntenyLsi02G000020
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR005540 - KNOX1
IPR005541 - KNOX2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596993.1 Homeobox protein knotted-1-like 2, partial [Cucurbita argyrosperma subsp. sororia]9.4e-4570.07Show/hide
Query:  MESENDCTEERQEPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFA
        M+S N  T++    +L+ L+ E+E++  +G+ LRRRISSHPLYGLL+ETHLNCLKVGGIGEL+RGYLA DL++ ++N+IRC N LNQSELDRFME+YC+A
Subjt:  MESENDCTEERQEPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFA

Query:  LSKLKEAMEESQLKSTAFINSMHWQLRELTATGAAAAAKKPTTSSSN
        LSKLKEAMEESQLKS AFINSM+ QLRELTATG  AAAKKPT +SS+
Subjt:  LSKLKEAMEESQLKSTAFINSMHWQLRELTATGAAAAAKKPTTSSSN

KAG7028461.1 Homeobox protein knotted-1-like 2 [Cucurbita argyrosperma subsp. argyrosperma]4.2e-4570.75Show/hide
Query:  MESENDCTEERQEPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFA
        M+S N  T++    +L+ L+ E+E++  +GE LRRRISSHPLYGLL+ETHLNCLKVGGIGEL+RGYLA DL++ ++N+IRC N LNQSELDRFME+YC+A
Subjt:  MESENDCTEERQEPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFA

Query:  LSKLKEAMEESQLKSTAFINSMHWQLRELTATGAAAAAKKPTTSSSN
        LSKLKEAMEESQLKS AFINSM+ QLRELTATG  AAAKKPT +SS+
Subjt:  LSKLKEAMEESQLKSTAFINSMHWQLRELTATGAAAAAKKPTTSSSN

XP_022137557.1 protein KNATM [Momordica charantia]3.2e-5382.61Show/hide
Query:  EPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEESQ
        E E K LQDE+E+E WEGE LRRRISSHPLYGLLVETHLNCLKVGGIG+++RGYLATD+IKQQDN IRC N LNQSELDRFMETYCFALSKLKEAMEESQ
Subjt:  EPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEESQ

Query:  LKSTAFINSMHWQLRELTATGAAAAAKKPTTSSSNDTN
        +KS AFINSMH QLRE+ AT  +AAA KPTTSSS+DTN
Subjt:  LKSTAFINSMHWQLRELTATGAAAAAKKPTTSSSNDTN

XP_022945492.1 homeobox protein KNOX3 [Cucurbita moschata]9.4e-4570.07Show/hide
Query:  MESENDCTEERQEPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFA
        M+S N  T++    +L+ L+ E+E++  +G+ LRRRISSHPLYGLL+ETHLNCLKVGGIGEL+RGYLA DL++ ++N+IRC N LNQSELDRFME+YC+A
Subjt:  MESENDCTEERQEPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFA

Query:  LSKLKEAMEESQLKSTAFINSMHWQLRELTATGAAAAAKKPTTSSSN
        LSKLKEAMEESQLKS AFINSM+ QLRELTATG  AAAKKPT +SS+
Subjt:  LSKLKEAMEESQLKSTAFINSMHWQLRELTATGAAAAAKKPTTSSSN

XP_038896017.1 homeobox protein knotted-1-like 2 [Benincasa hispida]2.7e-6085.43Show/hide
Query:  MESENDCTEERQEPELKGLQDEDEEE-CWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCF
        MESEN CTEERQEPELKGL+DE+EEE  WEGE LR +IS+HPLY LLVETHLNCLKVGGI        ATDLIKQQDNKIRCFNPLNQSELDRFMETYCF
Subjt:  MESENDCTEERQEPELKGLQDEDEEE-CWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCF

Query:  ALSKLKEAMEESQLKSTAFINSMHWQLRELTATGAAAAAKKPTTSSSNDTN
        ALSKLKEAMEESQLKS AFINSMHWQLR+LT TGAAA AKKPTTSSSNDTN
Subjt:  ALSKLKEAMEESQLKSTAFINSMHWQLRELTATGAAAAAKKPTTSSSNDTN

TrEMBL top hitse value%identityAlignment
A0A067JLR5 Uncharacterized protein2.0e-2458.72Show/hide
Query:  EEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEESQLKSTAFINSMH
        E+E  E E L++RISSHPLYGLLV+TH++CLKVG IG++++   +  + K+Q  K    + L+Q ELD FME YC ALSKLKEAMEE Q ++ AFIN+MH
Subjt:  EEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEESQLKSTAFINSMH

Query:  WQLRELTAT
         QLRELT T
Subjt:  WQLRELTAT

A0A6J1C8K6 protein KNATM1.6e-5382.61Show/hide
Query:  EPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEESQ
        E E K LQDE+E+E WEGE LRRRISSHPLYGLLVETHLNCLKVGGIG+++RGYLATD+IKQQDN IRC N LNQSELDRFMETYCFALSKLKEAMEESQ
Subjt:  EPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEESQ

Query:  LKSTAFINSMHWQLRELTATGAAAAAKKPTTSSSNDTN
        +KS AFINSMH QLRE+ AT  +AAA KPTTSSS+DTN
Subjt:  LKSTAFINSMHWQLRELTATGAAAAAKKPTTSSSNDTN

A0A6J1G133 homeobox protein KNOX34.6e-4570.07Show/hide
Query:  MESENDCTEERQEPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFA
        M+S N  T++    +L+ L+ E+E++  +G+ LRRRISSHPLYGLL+ETHLNCLKVGGIGEL+RGYLA DL++ ++N+IRC N LNQSELDRFME+YC+A
Subjt:  MESENDCTEERQEPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFA

Query:  LSKLKEAMEESQLKSTAFINSMHWQLRELTATGAAAAAKKPTTSSSN
        LSKLKEAMEESQLKS AFINSM+ QLRELTATG  AAAKKPT +SS+
Subjt:  LSKLKEAMEESQLKSTAFINSMHWQLRELTATGAAAAAKKPTTSSSN

A0A6J1IFV6 homeobox protein KNOX3-like8.6e-4470.75Show/hide
Query:  MESENDCTEERQEPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFA
        M+S N  T+  Q  +LK  Q+E+++    GE LRRRISSHPLYGLL++THLNCLKVGGIGEL+RGYLA DL++ ++N+IRC N LNQSELDRFME+YC+A
Subjt:  MESENDCTEERQEPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFA

Query:  LSKLKEAMEESQLKSTAFINSMHWQLRELTATGAAAAAKKPTTSSSN
        LSKLKEAMEESQLKS AFINSM+ QLRELTATG  AAAKKPT +SS+
Subjt:  LSKLKEAMEESQLKSTAFINSMHWQLRELTATGAAAAAKKPTTSSSN

V7C3D2 Uncharacterized protein2.6e-2452.41Show/hide
Query:  MESENDCTEERQEPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFA
        MESE   T      EL+  +D+DEEE    E L+RRISSHPLYGLLVE HL+CLKVG I  LER     ++   +   +  F   +QSELD FME YC A
Subjt:  MESENDCTEERQEPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFA

Query:  LSKLKEAMEESQLKSTAFINSMHWQLRELTATGAAAAAKKPTTSS
        L KLKEAM E Q KS AFIN+MH QLRE+T     A      +SS
Subjt:  LSKLKEAMEESQLKSTAFINSMHWQLRELTATGAAAAAKKPTTSS

SwissProt top hitse value%identityAlignment
F4HXU3 Protein KNATM1.5e-0538.24Show/hide
Query:  ESENDCTEERQEPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKV--GGIGELERGYLATDL-IKQQDNKIRCFNPLNQSELDRFMETYC
        + EN   E  ++     L++E +E   E E L++RISSHPLYGLL+ +HLNCLKV  G     E    A DL + +        +    SELD+FM  + 
Subjt:  ESENDCTEERQEPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKV--GGIGELERGYLATDL-IKQQDNKIRCFNPLNQSELDRFMETYC

Query:  FA
        F+
Subjt:  FA

O65034 Homeobox protein knotted-1-like 123.4e-0530.61Show/hide
Query:  EGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEESQLKSTAFINSMHWQL
        E E ++ +I +HP Y  L+  +L+C KVG   E+     AT    + D +    +     ELD+FME YC  L+K +E +     ++  F+  +  QL
Subjt:  EGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEESQLKSTAFINSMHWQL

P46640 Homeobox protein knotted-1-like 22.3e-0935Show/hide
Query:  LRRRISSHPLYGLLVETHLNCLKVGGIGE----LERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEESQLKSTAFINSMHWQLRE
        ++ +I+SHPLY  L++T+++C KVG   E    LE       + K+    + CF      ELD FMETYC  L K K  +     ++T FIN +  QL+ 
Subjt:  LRRRISSHPLYGLLVETHLNCLKVGGIGE----LERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEESQLKSTAFINSMHWQLRE

Query:  LTATGAAAAAKKPTTSSSND
        L    A+A A     + S+D
Subjt:  LTATGAAAAAKKPTTSSSND

Q75LX9 Putative homeobox protein knotted-1-like 54.0e-0629.41Show/hide
Query:  LRRRISSHPLYGLLVETHLNCLKVGG----IGELERGYLATDLIKQQ-DNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEESQLKSTAFINSMHWQLR
        ++ +I SHPLY  L+   ++C KVG     +G L    + TD+ +   D  +    P    ELD+FMETYC+ L++  + +     ++  F   +  Q+ 
Subjt:  LRRRISSHPLYGLLVETHLNCLKVGG----IGELERGYLATDLIKQQ-DNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEESQLKSTAFINSMHWQLR

Query:  EL
         L
Subjt:  EL

Q84JS6 Homeobox protein knotted-1-like 61.5e-0835.78Show/hide
Query:  LRRRISSHPLYGLLVETHLNCLKVGGIGE----LERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEESQLKSTAFINSMHWQLRE
        ++ +I+ HP Y  L++ +++C KVG   E    LE     +D+ KQ+     CF      ELD FMETYC  L K K  +     ++T F+N +  QLR 
Subjt:  LRRRISSHPLYGLLVETHLNCLKVGGIGE----LERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEESQLKSTAFINSMHWQLRE

Query:  LTATGAAAA
        L  TG  +A
Subjt:  LTATGAAAA

Arabidopsis top hitse value%identityAlignment
AT1G14760.2 KNOX Arabidopsis thaliana meinox3.1e-1438.93Show/hide
Query:  ESENDCTEERQEPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKV--GGIGELERGYLATDL-IKQQDNKIRCFNPLNQSELDRFMETYC
        + EN   E  ++     L++E +E   E E L++RISSHPLYGLL+ +HLNCLKV  G     E    A DL + +        +    SELD+FME YC
Subjt:  ESENDCTEERQEPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKV--GGIGELERGYLATDL-IKQQDNKIRCFNPLNQSELDRFMETYC

Query:  FALSKLKEAMEESQLKSTAFINSMHWQLREL
          L +LKEAME+   ++  F+++++ QL ++
Subjt:  FALSKLKEAMEESQLKSTAFINSMHWQLREL

AT1G14760.3 KNOX Arabidopsis thaliana meinox3.7e-0730.47Show/hide
Query:  ESENDCTEERQEPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFAL
        + EN   E  ++     L++E +E   E E L++RISSHPLYGLL+ +HLNCLK                                       E YC  L
Subjt:  ESENDCTEERQEPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFAL

Query:  SKLKEAMEESQLKSTAFINSMHWQLREL
         +LKEAME+   ++  F+++++ QL ++
Subjt:  SKLKEAMEESQLKSTAFINSMHWQLREL

AT1G23380.1 KNOTTED1-like homeobox gene 61.0e-0935.78Show/hide
Query:  LRRRISSHPLYGLLVETHLNCLKVGGIGE----LERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEESQLKSTAFINSMHWQLRE
        ++ +I+ HP Y  L++ +++C KVG   E    LE     +D+ KQ+     CF      ELD FMETYC  L K K  +     ++T F+N +  QLR 
Subjt:  LRRRISSHPLYGLLVETHLNCLKVGGIGE----LERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEESQLKSTAFINSMHWQLRE

Query:  LTATGAAAA
        L  TG  +A
Subjt:  LTATGAAAA

AT1G23380.2 KNOTTED1-like homeobox gene 63.4e-0835.14Show/hide
Query:  LRRRISSHPLYGLLVETHLNCLK--VGGIGE----LERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEESQLKSTAFINSMHWQL
        ++ +I+ HP Y  L++ +++C K  VG   E    LE     +D+ KQ+     CF      ELD FMETYC  L K K  +     ++T F+N +  QL
Subjt:  LRRRISSHPLYGLLVETHLNCLK--VGGIGE----LERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEESQLKSTAFINSMHWQL

Query:  RELTATGAAAA
        R L  TG  +A
Subjt:  RELTATGAAAA

AT1G70510.1 KNOTTED-like from Arabidopsis thaliana 21.6e-1035Show/hide
Query:  LRRRISSHPLYGLLVETHLNCLKVGGIGE----LERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEESQLKSTAFINSMHWQLRE
        ++ +I+SHPLY  L++T+++C KVG   E    LE       + K+    + CF      ELD FMETYC  L K K  +     ++T FIN +  QL+ 
Subjt:  LRRRISSHPLYGLLVETHLNCLKVGGIGE----LERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEESQLKSTAFINSMHWQLRE

Query:  LTATGAAAAAKKPTTSSSND
        L    A+A A     + S+D
Subjt:  LTATGAAAAAKKPTTSSSND


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCTGAGAACGATTGTACAGAAGAACGACAAGAACCAGAACTAAAAGGCCTACAAGATGAAGACGAAGAAGAATGCTGGGAAGGAGAAAGGCTGCGCAGGAGAAT
TTCCAGTCACCCCTTGTACGGCCTGTTGGTTGAGACTCACCTCAACTGTTTGAAGGTTGGAGGTATAGGTGAATTGGAAAGAGGCTACTTAGCTACGGATTTGATCAAAC
AGCAGGATAACAAGATCAGGTGCTTCAACCCGCTTAACCAATCAGAGCTAGATCGCTTCATGGAAACCTATTGCTTTGCATTGAGCAAGCTGAAAGAAGCAATGGAGGAA
TCTCAGTTAAAATCAACGGCATTCATAAACAGCATGCACTGGCAATTAAGGGAGCTCACGGCCACCGGTGCGGCAGCGGCAGCCAAGAAACCCACCACCTCGTCTTCTAA
TGACACAAACTGA
mRNA sequenceShow/hide mRNA sequence
GTCTACTTTATAACACTCGACTCTCGACTTGCGCAGATGCGGTAACCCCTGATATTTTCTGAAACAAGTCGAAGGAAGCTGAATTTGGGGTGTATTAAGAAGCCTATCTA
ATGGAGTCTGAGAACGATTGTACAGAAGAACGACAAGAACCAGAACTAAAAGGCCTACAAGATGAAGACGAAGAAGAATGCTGGGAAGGAGAAAGGCTGCGCAGGAGAAT
TTCCAGTCACCCCTTGTACGGCCTGTTGGTTGAGACTCACCTCAACTGTTTGAAGGTTGGAGGTATAGGTGAATTGGAAAGAGGCTACTTAGCTACGGATTTGATCAAAC
AGCAGGATAACAAGATCAGGTGCTTCAACCCGCTTAACCAATCAGAGCTAGATCGCTTCATGGAAACCTATTGCTTTGCATTGAGCAAGCTGAAAGAAGCAATGGAGGAA
TCTCAGTTAAAATCAACGGCATTCATAAACAGCATGCACTGGCAATTAAGGGAGCTCACGGCCACCGGTGCGGCAGCGGCAGCCAAGAAACCCACCACCTCGTCTTCTAA
TGACACAAACTGAAGCCAAGCAAAAGTAGAAAATATGATGGGCGATATGGGAGTTGTTCTCTAACCTACTTACGGAGTACGGACTAAGGTCTTTCGCACGGATATGTAAT
AACAGCTG
Protein sequenceShow/hide protein sequence
MESENDCTEERQEPELKGLQDEDEEECWEGERLRRRISSHPLYGLLVETHLNCLKVGGIGELERGYLATDLIKQQDNKIRCFNPLNQSELDRFMETYCFALSKLKEAMEE
SQLKSTAFINSMHWQLRELTATGAAAAAKKPTTSSSNDTN