CuGenDBv2

Gene ID	Lsi02G000040
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	60S ribosomal protein L18a
Genome location	chr02:38285..41747
RNA-Seq Expression	Lsi02G000040
Synteny	Lsi02G000040
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0006468 - protein phosphorylation (biological process) GO:0006508 - proteolysis (biological process) GO:0048544 - recognition of pollen (biological process) GO:0005829 - cytosol (cellular component) GO:0005840 - ribosome (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004672 - protein kinase activity (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR028877 - 50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8649787.1 hypothetical protein Csa_012172 [Cucumis sativus]

2.3e-19

96.3

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Query:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
        RVRC  IQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
Subjt:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK

XP_022940746.1 protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Cucurbita moschata]

2.3e-19

96.3

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Query:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
        RVRC  IQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
Subjt:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK

XP_023523440.1 aspartyl protease family protein 2-like [Cucurbita pepo subsp. pepo]

2.3e-19

96.3

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Query:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
        RVRC  IQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
Subjt:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK

XP_031740447.1 aspartyl protease family protein 2 [Cucumis sativus]

2.3e-19

96.3

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Query:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
        RVRC  IQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
Subjt:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK

XP_038898916.1 60S ribosomal protein L18a [Benincasa hispida]

2.3e-19

96.3

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Query:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
        RVRC  IQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
Subjt:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7NW98 60S ribosomal protein L18a

1.4e-19

94.44

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Query:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
        RVRC  IQIIKTAT+PAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
Subjt:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK

A0A6J1FJB5 protein ASPARTIC PROTEASE IN GUARD CELL 1-like

1.1e-19

96.3

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Query:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
        RVRC  IQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
Subjt:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK

A0A6J1J0D9 protein ASPARTIC PROTEASE IN GUARD CELL 1-like

1.1e-19

96.3

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Query:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
        RVRC  IQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
Subjt:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK

M0SJE7 60S ribosomal protein L18a

3.2e-19

92.59

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Query:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
        RVRC  IQIIKTAT+P+KLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
Subjt:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK

M0TFB2 60S ribosomal protein L18a

3.2e-19

92.59

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Query:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
        RVRC  IQIIKTAT+P+KLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
Subjt:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK

SwissProt top hits

e value

%identity

Alignment

P51418 60S ribosomal protein L18a-2

1.4e-19

88.89

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Query:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
        RVR   IQIIKTATVPAKLCKRESTKQFH+SKIKFPLVF+KVRPP+RKLKTTYK
Subjt:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK

Q8L7K0 60S ribosomal protein L18a-1

5.3e-19

87.04

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Query:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
        RVR   IQIIKTATVPA LCKRESTKQFH+SKIKFPLVF+KVRPPTRKLKTT+K
Subjt:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK

Q943F3 60S ribosomal protein L18a

7.1e-16

77.78

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Query:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
        RVR   IQIIKTATV  KLCKR++TKQFH S IKFPLV++KVRPPTRKLKTT+K
Subjt:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK

Q9ATF5 60S ribosomal protein L18a

3.8e-17

79.63

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Query:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
        RVR   IQIIKTAT+PAKLCKRES+KQFH+SKIKFPLV +K+RPP+RKLKT YK
Subjt:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK

Q9LUD4 60S ribosomal protein L18a-3

6.9e-19

87.04

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Query:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
        RVR   IQIIKTATVPAKLCKRE TKQFH+SKIKFPLVF+KVRPP+RKLKTTYK
Subjt:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK

Arabidopsis top hits

e value

%identity

Alignment

AT1G29965.1 Ribosomal protein L18ae/LX family protein

3.8e-20

87.04

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Query:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
        RVR   IQIIKTATVPA LCKRESTKQFH+SKIKFPLVF+KVRPPTRKLKTT+K
Subjt:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK

AT1G29970.2 60S ribosomal protein L18A-1

3.8e-20

87.04

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Query:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
        RVR   IQIIKTATVPA LCKRESTKQFH+SKIKFPLVF+KVRPPTRKLKTT+K
Subjt:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK

AT2G34480.1 Ribosomal protein L18ae/LX family protein

9.9e-21

88.89

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Query:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
        RVR   IQIIKTATVPAKLCKRESTKQFH+SKIKFPLVF+KVRPP+RKLKTTYK
Subjt:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK

AT3G14600.1 Ribosomal protein L18ae/LX family protein

4.9e-20

87.04

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Query:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK
        RVR   IQIIKTATVPAKLCKRE TKQFH+SKIKFPLVF+KVRPP+RKLKTTYK
Subjt:  RVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYK

Sequences

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CDS sequence

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ATGAGGAAGTCGTCGGGAGGGCTCTTCCTTCTAAGGGTGAGGTGCCTGTTCATCCAAATCATTAAGACAGCAACCGTTCCTGCAAAACTCTGCAAGAGGGAGAGTACAAA
GCAGTTCCATGACTCAAAGATCAAATTCCCGTTGGTGTTTAAGAAGGTGAGGCCACCCACCAGGAAGCTCAAGACAACATACAAAGAACTTGTTCATGGAATTCTGCTCA
TCTTTGGCTTCTCTTCTGTGGAAACATTTGATTATTATTGA

mRNA sequence

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Protein sequence

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MRKSSGGLFLLRVRCLFIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKELVHGILLIFGFSSVETFDYY

Lsi02G000040 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome