; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G000110 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G000110
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein-serine/threonine phosphatase
Genome locationchr02:140230..148151
RNA-Seq ExpressionLsi02G000110
SyntenyLsi02G000110
Gene Ontology termsGO:0006369 - termination of RNA polymerase II transcription (biological process)
GO:0006378 - mRNA polyadenylation (biological process)
GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain (biological process)
GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex (cellular component)
GO:0008420 - RNA polymerase II CTD heptapeptide repeat phosphatase activity (molecular function)
InterPro domainsIPR006811 - RNA polymerase II subunit A


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137380.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis sativus]3.2e-9988.26Show/hide
Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        MKYRYA+VCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        MLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIEDLNTRDHA+MKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVI FEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
        Q RRKLLYSISFY
Subjt:  QQRRKLLYSISFY

XP_008446784.1 PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis melo]5.0e-10089.2Show/hide
Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        MKYRYA+VCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        MLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
        Q RRKLLYSISFY
Subjt:  QQRRKLLYSISFY

XP_022948646.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita moschata]3.2e-9987.79Show/hide
Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        MKYRYA+VCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDH LMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIER ESWED+IDDIVI FEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
         QRRKLLYSISFY
Subjt:  QQRRKLLYSISFY

XP_022997876.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita maxima]4.2e-9987.79Show/hide
Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        MKYRYA+VCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTF+LCQEIER ESWED+IDDIVI FEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
         QRRKLLYSISFY
Subjt:  QQRRKLLYSISFY

XP_038895501.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X1 [Benincasa hispida]1.5e-9988.26Show/hide
Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        MKYRYA+VCSSNQNRSMEAHSILK+KGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        MLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARL FDLCQE+ERTESWEDSIDDIVITFEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
        QQRRKLLYSISFY
Subjt:  QQRRKLLYSISFY

TrEMBL top hitse value%identityAlignment
A0A1S3BFX9 Protein-serine/threonine phosphatase2.4e-10089.2Show/hide
Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        MKYRYA+VCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        MLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
        Q RRKLLYSISFY
Subjt:  QQRRKLLYSISFY

A0A6J1C6C8 Protein-serine/threonine phosphatase1.9e-9786.38Show/hide
Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        MKYRYA+VCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        MLKRNA VKTAPQRWQDNAADG FDVVF+FEEKVFDMVIEDLNTRDH LMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWE +IDDIVI FEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
        Q RRKLLYSISFY
Subjt:  QQRRKLLYSISFY

A0A6J1G9U0 Protein-serine/threonine phosphatase1.6e-9987.79Show/hide
Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        MKYRYA+VCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDH LMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIER ESWED+IDDIVI FEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
         QRRKLLYSISFY
Subjt:  QQRRKLLYSISFY

A0A6J1K8Q5 Protein-serine/threonine phosphatase2.0e-9987.79Show/hide
Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        MKYRYA+VCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTF+LCQEIER ESWED+IDDIVI FEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
         QRRKLLYSISFY
Subjt:  QQRRKLLYSISFY

A0A7N2MRF2 Protein-serine/threonine phosphatase5.4e-9279.81Show/hide
Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        MK+RYA+VCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMF+DLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        MLKRN++VK APQRWQ+NAADG FDVVF FEEKVFDMV+EDL++RDHALMKTVL++NLEVKDNHEEAAIGARLT DLCQEIE  ESWEDSIDDI+ TFEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
        QQRRKLLYSISFY
Subjt:  QQRRKLLYSISFY

SwissProt top hitse value%identityAlignment
Q17QI2 RNA polymerase II subunit A C-terminal domain phosphatase SSU726.4e-5048.57Show/hide
Query:  RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLK
        R AVVCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD EL                    Y +NGIL ML 
Subjt:  RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLK

Query:  RNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQR
        RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN+R+    + V ++N++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  
Subjt:  RNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQR

Query:  RKLLYSISFY
        R  L+++ FY
Subjt:  RKLLYSISFY

Q4KLK9 RNA polymerase II subunit A C-terminal domain phosphatase SSU724.9e-5049.05Show/hide
Query:  RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLK
        R AVVCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD EL                    Y +NGIL ML 
Subjt:  RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLK

Query:  RNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQR
        RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN+R+    + V +VN++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  
Subjt:  RNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQR

Query:  RKLLYSISFY
        R  L+++ FY
Subjt:  RKLLYSISFY

Q5ZJQ7 RNA polymerase II subunit A C-terminal domain phosphatase SSU728.4e-5048.57Show/hide
Query:  RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLK
        R AVVCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD EL                    Y +NGIL ML 
Subjt:  RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLK

Query:  RNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQR
        RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN+R+    + V ++N++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  
Subjt:  RNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQR

Query:  RKLLYSISFY
        R  L+++ FY
Subjt:  RKLLYSISFY

Q9CY97 RNA polymerase II subunit A C-terminal domain phosphatase SSU723.8e-5049.05Show/hide
Query:  RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLK
        R AVVCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD EL                    Y +NGIL ML 
Subjt:  RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLK

Query:  RNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQR
        RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN+R+    + V +VN++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  
Subjt:  RNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQR

Query:  RKLLYSISFY
        R  L+++ FY
Subjt:  RKLLYSISFY

Q9NP77 RNA polymerase II subunit A C-terminal domain phosphatase SSU724.9e-5049.05Show/hide
Query:  RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLK
        R AVVCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD EL                    Y +NGIL ML 
Subjt:  RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLK

Query:  RNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQR
        RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN+R+    + V +VN++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  
Subjt:  RNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQR

Query:  RKLLYSISFY
        R  L+++ FY
Subjt:  RKLLYSISFY

Arabidopsis top hitse value%identityAlignment
AT1G73820.1 Ssu72-like family protein4.1e-8470.42Show/hide
Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        M++RYA+VCSSNQNRSMEAH++LK +G +V+SYGTG+HVKLPGPSLREPNVYDFGTPYK MFD+LRRKDPEL                    YKRNGIL 
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        M+KRN +VK APQRWQDNA DG FDVV TFEEKVFD V+EDLN R+ +L KT+L++NLEVKDNHEEAAIG RL  +LCQEIE  E+WED+IDDIV  FEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
        Q RRKL+YSISFY
Subjt:  QQRRKLLYSISFY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTATCGTTATGCAGTGGTTTGCTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGGGC
TCACGTGAAGCTTCCTGGACCTTCTCTCCGGGAACCCAATGTATACGATTTTGGTACCCCTTACAAGCACATGTTCGATGATCTCCGTCGAAAAGATCCTGAACTGTATC
CTTTTTCTTCTCCTCCCTATCATTTCTCCCCCGAAAACGACCCGAAGACTGGTGGATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACG
GCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTTCTTTGACGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTCATTGAAGATTTGAACACCCGTGATCA
TGCACTGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGGCTTACTTTTGATCTTTGCCAGGAGATTGAACGGA
CTGAATCATGGGAAGATTCTATAGATGACATCGTGATTACCTTCGAGAAACAGCAGAGAAGAAAACTGTTGTATAGCATTTCCTTTTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGTATCGTTATGCAGTGGTTTGCTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGGGC
TCACGTGAAGCTTCCTGGACCTTCTCTCCGGGAACCCAATGTATACGATTTTGGTACCCCTTACAAGCACATGTTCGATGATCTCCGTCGAAAAGATCCTGAACTGTATC
CTTTTTCTTCTCCTCCCTATCATTTCTCCCCCGAAAACGACCCGAAGACTGGTGGATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACG
GCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTTCTTTGACGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTCATTGAAGATTTGAACACCCGTGATCA
TGCACTGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGGCTTACTTTTGATCTTTGCCAGGAGATTGAACGGA
CTGAATCATGGGAAGATTCTATAGATGACATCGTGATTACCTTCGAGAAACAGCAGAGAAGAAAACTGTTGTATAGCATTTCCTTTTACTGAAGACAGTAAAGATACTCT
AGAGTCATGGAATCTGCACGTCGCATCTTCGCTATTCAAGTGTAATTTTATGAAGAAAATTGTGTGAGAGCAAATCTTTCTAGTACTTTTTTTTAACACAAGAGTAGGAT
GGAAGAATAAATATTAATTACTATAGTTATATTCACTTTGATACATTTTTTTTTTTCTTGTTCTTTGAATCCTAAGTGGGAAAAGAAAAACTGTGATATATAGCAACTTT
TAGATTGCCGGTTGGAAAAAAGACAAAATTCAGGTTTCTTTCAAAGAAAGGTAAGCACTCTACAGTGCACATTGGTTGTATTTTCGATGATAATTGAATTGGCCTCGATG
GTCCTACAACAGATGTTCAAAATATGGTGCAAGTATATTTCACATGGTCAAATAACTATATTTCATATGAATTTACTAA
Protein sequenceShow/hide protein sequence
MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLKRNAAVKT
APQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQRRKLLYSISFY