; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G000440 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G000440
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPectate lyase family protein
Genome locationchr02:428058..430143
RNA-Seq ExpressionLsi02G000440
SyntenyLsi02G000440
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACR34321.1 unknown [Zea mays]3.3e-0529.03Show/hide
Query:  PWYKLFA---------TDSHVPISDIAVIVTKKNNLVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHFGG-------------------------
        PW+ L           +D H  +  + V   +++++V+V E  VG+GD  G   DV + +LA  +  VV PH GG                         
Subjt:  PWYKLFA---------TDSHVPISDIAVIVTKKNNLVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHFGG-------------------------

Query:  --------LVDNKAVDYDVGGLENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPDFGFDHCCAVSERTWAWVYRVV
                +VD   VD DV      + R  GD    A+AV+G  AA+++ LLK + H   E DP    D   A  ER  A V+ VV
Subjt:  --------LVDNKAVDYDVGGLENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPDFGFDHCCAVSERTWAWVYRVV

BBG96110.1 Exonuclease family protein [Prunus dulcis]3.7e-0945.78Show/hide
Query:  LENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPDFGFDHCCAVSERTWAWVYRVVARVRDLVAYEISSHVVAN
        L++ Q  I  +V+ S S+++G EA NEK  +K N+HV  E DP F FDH   +S+ +   V R V  VRDL+ Y+ISS+VVA+
Subjt:  LENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPDFGFDHCCAVSERTWAWVYRVVARVRDLVAYEISSHVVAN

CAA7395931.1 unnamed protein product [Spirodela intermedia]3.9e-0631.9Show/hide
Query:  KNNLVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHFGGLVDNKAVDYDVGGLENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPD
        +++LV+ +E ++G+GD       V +PILA V+R+V           + +D DVG + +      GDV G ASAVDG        LL  + HV  E DP 
Subjt:  KNNLVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHFGGLVDNKAVDYDVGGLENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPD

Query:  FGFDHCCAVSERTWAWVYRVVARVRDLVAYEISSHVVANPTEQTASCCLFLLQYGFDLQHLSM
         G      V E  W W   +   +  +         +  P  Q+ASCC F  Q G   Q  SM
Subjt:  FGFDHCCAVSERTWAWVYRVVARVRDLVAYEISSHVVANPTEQTASCCLFLLQYGFDLQHLSM

KAF7820188.1 hypothetical protein G2W53_025643 [Senna tora]1.4e-0832.72Show/hide
Query:  HVPISDIAVIVTKKNNLVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHF-----------------------------GGL--VDNKAVDYDVGG
        H  I  + V+V +K++LV++ E  + N D   P   + QP+ A  QR VV+P                               GGL  VD   VD DVG 
Subjt:  HVPISDIAVIVTKKNNLVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHF-----------------------------GGL--VDNKAVDYDVGG

Query:  LENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPDFG-FDHCCAVSERTWAWV
        +   +  + GDVD  A+AVDG EA  ++ +L+ + HV  E DP+ G  DH   V+E +W  V
Subjt:  LENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPDFG-FDHCCAVSERTWAWV

RWV94256.1 hypothetical protein GW17_00043216, partial [Ensete ventricosum]3.3e-0533.59Show/hide
Query:  LVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHFGG-------------------------------LVDNKAVDYDVGGLENHQTRIPGDVDGSA
        LV+V E IVG+G+ SG    + +PI A  QR VV+P   G                               +VD +AVD DVG + +      GDVD  A
Subjt:  LVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHFGG-------------------------------LVDNKAVDYDVGGLENHQTRIPGDVDGSA

Query:  SAVDGGEAANEKRLLKHNIHVFSECDPD
        + VD  EA +++ LL+ + HV  E DP+
Subjt:  SAVDGGEAANEKRLLKHNIHVFSECDPD

TrEMBL top hitse value%identityAlignment
A0A151TQ30 Uncharacterized protein (Fragment)1.0e-0427.88Show/hide
Query:  HVPISDIAVIVTKKNNLVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHFGGLVDNK-------------------------------AVDYDVGG
        H P+  + ++V+KK+NLV+V E  VG+GD  GP   V Q + A  +  +V+P   G  D                                  VD DV  
Subjt:  HVPISDIAVIVTKKNNLVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHFGGLVDNK-------------------------------AVDYDVGG

Query:  LENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPD-FGFDHCCAVSERTWAWVYRV
        +      +P  +   A+ V   EA  ++ +L+ + HV +E DP     DH   V ER    V RV
Subjt:  LENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPD-FGFDHCCAVSERTWAWVYRV

A0A444D7Y4 Uncharacterized protein (Fragment)1.6e-0533.59Show/hide
Query:  LVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHFGG-------------------------------LVDNKAVDYDVGGLENHQTRIPGDVDGSA
        LV+V E IVG+G+ SG    + +PI A  QR VV+P   G                               +VD +AVD DVG + +      GDVD  A
Subjt:  LVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHFGG-------------------------------LVDNKAVDYDVGGLENHQTRIPGDVDGSA

Query:  SAVDGGEAANEKRLLKHNIHVFSECDPD
        + VD  EA +++ LL+ + HV  E DP+
Subjt:  SAVDGGEAANEKRLLKHNIHVFSECDPD

A0A4Y1QW81 Exonuclease family protein1.8e-0945.78Show/hide
Query:  LENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPDFGFDHCCAVSERTWAWVYRVVARVRDLVAYEISSHVVAN
        L++ Q  I  +V+ S S+++G EA NEK  +K N+HV  E DP F FDH   +S+ +   V R V  VRDL+ Y+ISS+VVA+
Subjt:  LENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPDFGFDHCCAVSERTWAWVYRVVARVRDLVAYEISSHVVAN

A0A7I8KE02 Hypothetical protein1.9e-0631.9Show/hide
Query:  KNNLVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHFGGLVDNKAVDYDVGGLENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPD
        +++LV+ +E ++G+GD       V +PILA V+R+V           + +D DVG + +      GDV G ASAVDG        LL  + HV  E DP 
Subjt:  KNNLVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHFGGLVDNKAVDYDVGGLENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPD

Query:  FGFDHCCAVSERTWAWVYRVVARVRDLVAYEISSHVVANPTEQTASCCLFLLQYGFDLQHLSM
         G      V E  W W   +   +  +         +  P  Q+ASCC F  Q G   Q  SM
Subjt:  FGFDHCCAVSERTWAWVYRVVARVRDLVAYEISSHVVANPTEQTASCCLFLLQYGFDLQHLSM

C4IZH1 Uncharacterized protein1.6e-0529.03Show/hide
Query:  PWYKLFA---------TDSHVPISDIAVIVTKKNNLVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHFGG-------------------------
        PW+ L           +D H  +  + V   +++++V+V E  VG+GD  G   DV + +LA  +  VV PH GG                         
Subjt:  PWYKLFA---------TDSHVPISDIAVIVTKKNNLVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHFGG-------------------------

Query:  --------LVDNKAVDYDVGGLENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPDFGFDHCCAVSERTWAWVYRVV
                +VD   VD DV      + R  GD    A+AV+G  AA+++ LLK + H   E DP    D   A  ER  A V+ VV
Subjt:  --------LVDNKAVDYDVGGLENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPDFGFDHCCAVSERTWAWVYRVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACGTAATGCCCCGGAGGAGCTTGTTAATGATCTGAGCCACTTGGCATCTGCAACTGGAAACCGTTGTTGGGCGTTTATTATTGTTACCTGTTTTGACTTTGATGC
GATGAAAAGGTTGGCTTCGCTCTTGACGCTCGGATTCATGCTCCCTCCAATTGCGTATTGCGTCCAACCTTGGTACAAATTGTTCGCCACTGACTCTCATGTTCCGATCT
CGGACATAGCCGTCATCGTGACCAAGAAGAATAACCTTGTCTTGGTCTCGGAACCAATTGTTGGAAATGGTGATGTCAGTGGACCCACGGGTGACGTCAAGCAACCCATC
CTCGCAGCGGTACAGCGTGTTGTGGTCAACCCACACTTTGGAGGCCTGGTGGATAATAAGGCCGTGGATTATGATGTTGGTGGCCTTGAAAACCATCAGACACGCATTCC
CGGTGATGTGGACGGTAGCGCCTCGGCCGTCGATGGCGGTGAAGCTGCTAATGAGAAGCGGCTTCTTAAGCACAATATTCATGTCTTTTCGGAATGTGATCCAGACTTTG
GGTTTGATCATTGTTGCGCCGTATCTGAGCGTACCTGGGCGTGGGTTTATAGGGTCGTCGCTAGGGTCCGTGACTTGGTAGCGTATGAGATTTCTTCCCATGTTGTTGCG
AACCCAACTGAACAAACGGCGAGTTGTTGCCTGTTTCTTCTCCAGTATGGGTTTGATCTCCAGCATCTGTCAATGGCGTTCATCTTCAAGCCATGGGCTTCTGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAACGTAATGCCCCGGAGGAGCTTGTTAATGATCTGAGCCACTTGGCATCTGCAACTGGAAACCGTTGTTGGGCGTTTATTATTGTTACCTGTTTTGACTTTGATGC
GATGAAAAGGTTGGCTTCGCTCTTGACGCTCGGATTCATGCTCCCTCCAATTGCGTATTGCGTCCAACCTTGGTACAAATTGTTCGCCACTGACTCTCATGTTCCGATCT
CGGACATAGCCGTCATCGTGACCAAGAAGAATAACCTTGTCTTGGTCTCGGAACCAATTGTTGGAAATGGTGATGTCAGTGGACCCACGGGTGACGTCAAGCAACCCATC
CTCGCAGCGGTACAGCGTGTTGTGGTCAACCCACACTTTGGAGGCCTGGTGGATAATAAGGCCGTGGATTATGATGTTGGTGGCCTTGAAAACCATCAGACACGCATTCC
CGGTGATGTGGACGGTAGCGCCTCGGCCGTCGATGGCGGTGAAGCTGCTAATGAGAAGCGGCTTCTTAAGCACAATATTCATGTCTTTTCGGAATGTGATCCAGACTTTG
GGTTTGATCATTGTTGCGCCGTATCTGAGCGTACCTGGGCGTGGGTTTATAGGGTCGTCGCTAGGGTCCGTGACTTGGTAGCGTATGAGATTTCTTCCCATGTTGTTGCG
AACCCAACTGAACAAACGGCGAGTTGTTGCCTGTTTCTTCTCCAGTATGGGTTTGATCTCCAGCATCTGTCAATGGCGTTCATCTTCAAGCCATGGGCTTCTGAATAG
Protein sequenceShow/hide protein sequence
MKRNAPEELVNDLSHLASATGNRCWAFIIVTCFDFDAMKRLASLLTLGFMLPPIAYCVQPWYKLFATDSHVPISDIAVIVTKKNNLVLVSEPIVGNGDVSGPTGDVKQPI
LAAVQRVVVNPHFGGLVDNKAVDYDVGGLENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPDFGFDHCCAVSERTWAWVYRVVARVRDLVAYEISSHVVA
NPTEQTASCCLFLLQYGFDLQHLSMAFIFKPWASE