CuGenDBv2

Gene ID	Lsi02G000530
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	UPF0426 protein At1g28150, chloroplastic
Genome location	chr02:504581..507080
RNA-Seq Expression	Lsi02G000530
Synteny	Lsi02G000530
Gene Ontology terms	GO:0043086 - negative regulation of catalytic activity (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0030599 - pectinesterase activity (molecular function) GO:0046910 - pectinesterase inhibitor activity (molecular function)
InterPro domains	IPR040278 - UPF0426 protein

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004137400.1 UPF0426 protein At1g28150, chloroplastic [Cucumis sativus]

1.4e-52

86.72

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Query:  MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK
        MAALLLHSSSTASVLFG +GKLKGRNH+SILSS KP+R ++  LG NNSTNGI AFFFNPV DPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK
Subjt:  MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK

Query:  TVESAGLTEEVDTQESVQEDGPTAIEIE
        TVESAGL EEVDTQ SVQEDGPT IEIE
Subjt:  TVESAGLTEEVDTQESVQEDGPTAIEIE

XP_008439829.1 PREDICTED: UPF0426 protein At1g28150, chloroplastic [Cucumis melo]

1.5e-54

89.06

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Query:  MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK
        MAALLLHSSSTASVLFG +GKLK R+HHSILSS KPMR ++L LG NNSTNGI AFFFNPVEDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK
Subjt:  MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK

Query:  TVESAGLTEEVDTQESVQEDGPTAIEIE
        TVESAGLTEEVDTQ SVQEDGPT IEIE
Subjt:  TVESAGLTEEVDTQESVQEDGPTAIEIE

XP_022924196.1 UPF0426 protein At1g28150, chloroplastic [Cucurbita moschata]

1.2e-51

83.59

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Query:  MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK
        MA LLLHSSSTASVL GG+GK +  N HSI S  KPMR N L LGC+NSTNGICAF FNP+EDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK
Subjt:  MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK

Query:  TVESAGLTEEVDTQESVQEDGPTAIEIE
        TVESAG+TEEVDTQ SVQEDGPT IEIE
Subjt:  TVESAGLTEEVDTQESVQEDGPTAIEIE

XP_023518976.1 UPF0426 protein At1g28150, chloroplastic [Cucurbita pepo subsp. pepo]

5.7e-51

82.81

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Query:  MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK
        MA LLLHSSSTASVL GG+GK +  N H I S  KPMR N L LGC+NSTNGICAF FNP+EDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK
Subjt:  MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK

Query:  TVESAGLTEEVDTQESVQEDGPTAIEIE
        TVESAG+TEEVDTQ SVQEDGPT IEIE
Subjt:  TVESAGLTEEVDTQESVQEDGPTAIEIE

XP_038893812.1 UPF0426 protein At1g28150, chloroplastic [Benincasa hispida]

2.9e-55

88.28

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Query:  MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK
        MAALLLHSSS  SVLFG +GKLKGRNHHSILSS+KP+RGN+L L CNN TNGI AFFFNPVEDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK
Subjt:  MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK

Query:  TVESAGLTEEVDTQESVQEDGPTAIEIE
        TVESAGLTEE+DTQ SVQEDGPT IEIE
Subjt:  TVESAGLTEEVDTQESVQEDGPTAIEIE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LT92 Uncharacterized protein

6.6e-53

86.72

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Query:  MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK
        MAALLLHSSSTASVLFG +GKLKGRNH+SILSS KP+R ++  LG NNSTNGI AFFFNPV DPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK
Subjt:  MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK

Query:  TVESAGLTEEVDTQESVQEDGPTAIEIE
        TVESAGL EEVDTQ SVQEDGPT IEIE
Subjt:  TVESAGLTEEVDTQESVQEDGPTAIEIE

A0A1S3AZP7 UPF0426 protein At1g28150, chloroplastic

7.1e-55

89.06

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Query:  MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK
        MAALLLHSSSTASVLFG +GKLK R+HHSILSS KPMR ++L LG NNSTNGI AFFFNPVEDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK
Subjt:  MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK

Query:  TVESAGLTEEVDTQESVQEDGPTAIEIE
        TVESAGLTEEVDTQ SVQEDGPT IEIE
Subjt:  TVESAGLTEEVDTQESVQEDGPTAIEIE

A0A5D3BGH6 UPF0426 protein

7.1e-55

89.06

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Query:  MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK
        MAALLLHSSSTASVLFG +GKLK R+HHSILSS KPMR ++L LG NNSTNGI AFFFNPVEDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK
Subjt:  MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK

Query:  TVESAGLTEEVDTQESVQEDGPTAIEIE
        TVESAGLTEEVDTQ SVQEDGPT IEIE
Subjt:  TVESAGLTEEVDTQESVQEDGPTAIEIE

A0A6J1E8W6 UPF0426 protein At1g28150, chloroplastic

5.6e-52

83.59

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Query:  MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK
        MA LLLHSSSTASVL GG+GK +  N HSI S  KPMR N L LGC+NSTNGICAF FNP+EDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK
Subjt:  MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK

Query:  TVESAGLTEEVDTQESVQEDGPTAIEIE
        TVESAG+TEEVDTQ SVQEDGPT IEIE
Subjt:  TVESAGLTEEVDTQESVQEDGPTAIEIE

A0A6J1KGM3 UPF0426 protein At1g28150, chloroplastic

1.4e-50

82.03

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Query:  MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK
        MA LLLHSSSTA VL GG+GK +  N HSI S  KPMR N L LGCNNSTN ICAF F P+EDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK
Subjt:  MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK

Query:  TVESAGLTEEVDTQESVQEDGPTAIEIE
        TVESAG+TEEVDTQ SVQEDGPT IEIE
Subjt:  TVESAGLTEEVDTQESVQEDGPTAIEIE

SwissProt top hits

e value

%identity

Alignment

P74786 UPF0426 protein ssl0294

4.0e-07

40.3

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Query:  PVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTE--EVDTQESVQEDGPTAIEIE
        PV +E  ++P+AFAGG  +G+LRL L +DPLK+W++K     G+T+    D  ++ Q++ P +I+I+
Subjt:  PVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTE--EVDTQESVQEDGPTAIEIE

Q8YQ06 UPF0426 protein asl4034

5.5e-04

32.31

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Query:  PVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQESVQEDGPTAIEIE
        P+ K+ ++ P +F GG  +G+LRL+L +DP+K W+ K       +  V    + +  GP +I I+
Subjt:  PVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQESVQEDGPTAIEIE

Q9FZ89 UPF0426 protein At1g28150, chloroplastic

6.7e-18

60.81

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Query:  FNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEE---VDTQESVQEDGPTAIEIE
        FN  ++P++ EALKEP+AF GG+FAGLLRLDLNE+PLK+WV +TVE++G+TEE    D   S  ED P  IEIE
Subjt:  FNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEE---VDTQESVQEDGPTAIEIE

Arabidopsis top hits

e value

%identity

Alignment

AT1G28150.1 unknown protein

4.7e-19

60.81

Show/hide

Query:  FNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEE---VDTQESVQEDGPTAIEIE
        FN  ++P++ EALKEP+AF GG+FAGLLRLDLNE+PLK+WV +TVE++G+TEE    D   S  ED P  IEIE
Subjt:  FNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEE---VDTQESVQEDGPTAIEIE

Sequences

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CDS sequence

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ATGGCCGCTCTTCTTCTTCATTCCTCTTCGACTGCGAGCGTTCTGTTTGGAGGAGTGGGGAAACTAAAGGGACGGAATCATCATTCGATTTTATCATCCAACAAACCTAT
GCGCGGTAACTATCTTAGTCTCGGCTGCAATAATTCTACAAATGGCATCTGCGCATTTTTCTTCAATCCTGTTGAGGATCCCGTTATCAAAGAAGCTCTTAAGGAGCCAG
TTGCCTTCGCAGGTGGGCTATTTGCTGGCCTTCTAAGGCTTGATTTGAACGAAGATCCATTGAAGGAATGGGTTAAGAAGACAGTGGAATCAGCTGGACTCACGGAAGAA
GTTGATACTCAAGAATCTGTACAAGAGGATGGCCCGACCGCGATCGAGATTGAATGA

mRNA sequence

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GTGTCAAATTAAATCAAATGTAGATAAAAACATGGGCATGTTCCTAGTTTTCGAAATGTTTGGTCAATTGCAGGAAGAAAACAAGGCGAATTAAAGCCATTACCTCAATT
GGAACGCAAATATCTTCATCCTCTTCTTCCATCATCCTTCAATCAATCAGAAACAGCTCCATTAGCATCATCAGAGATTACCAATGGCCGCTCTTCTTCTTCATTCCTCT
TCGACTGCGAGCGTTCTGTTTGGAGGAGTGGGGAAACTAAAGGGACGGAATCATCATTCGATTTTATCATCCAACAAACCTATGCGCGGTAACTATCTTAGTCTCGGCTG
CAATAATTCTACAAATGGCATCTGCGCATTTTTCTTCAATCCTGTTGAGGATCCCGTTATCAAAGAAGCTCTTAAGGAGCCAGTTGCCTTCGCAGGTGGGCTATTTGCTG
GCCTTCTAAGGCTTGATTTGAACGAAGATCCATTGAAGGAATGGGTTAAGAAGACAGTGGAATCAGCTGGACTCACGGAAGAAGTTGATACTCAAGAATCTGTACAAGAG
GATGGCCCGACCGCGATCGAGATTGAATGATCCCATCAATGGACCTAACCTCTTACAGTTCGTTCTTATTTATTCCAATAATATATAAACTGGAAAAGTGGGAATGGATT
GATATTTGATTTGATTTAGTATTACTACAGCTACCTTGATTTAAAACAAGAAGTAAATCTGAGTTAGGAGTTAACCATTTTTCATATCCAGATTTAGGAGGAAACACGTC
ATTAGTGTTTTGAATTAATTAATTGTTCAAGTTGAATTAATATCTTTTTGTGATAATTTATT

Protein sequence

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MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEE
VDTQESVQEDGPTAIEIE

Lsi02G000530 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome