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Lsi02G000560 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G000560
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontranscription factor PRE5-like
Genome locationchr02:536620..537204
RNA-Seq ExpressionLsi02G000560
SyntenyLsi02G000560
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044172 - Transcription factor ILI2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020038.1 Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]1.2e-2581.01Show/hide
Query:  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKSLL
        MASS L DD+L+NL+ +LQTLLP LNH    S VSTAEILKETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEMVK LL
Subjt:  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKSLL

TYJ98875.1 transcription factor PRE5-like [Cucumis melo var. makuwa]1.8e-2686.67Show/hide
Query:  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEM
        MASSKLGD+EL+NLV KL+TLLP LNHKPD+S+  ST EILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEM
Subjt:  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEM

XP_008440200.1 PREDICTED: transcription factor PRE5-like [Cucumis melo]1.1e-2885.19Show/hide
Query:  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKSLLL
        MASSKLGD+EL+NLV KL+TLLP LNHKPD+S+  ST EILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVK LL+
Subjt:  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKSLLL

XP_011649678.1 transcription factor PRE5 [Cucumis sativus]4.3e-2885Show/hide
Query:  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKSLL
        MASSKLGDDEL+NLV KLQTLLP LNHKP +S+ VS  EILKETCDYIKKLQ+EVDDLSERLWKQLDSMG+DFEMVK LL
Subjt:  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKSLL

XP_038895474.1 transcription factor PRE5-like [Benincasa hispida]4.3e-2884.34Show/hide
Query:  MASSKLGDDELQNLVFKLQTLLPHLNHKPD-DSAVSTA--EILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKSLLL
        MASSKL DD+LQNLVFKLQTLLPHLN KPD DSAVS +  +ILKETCDYIKKLQ+EVDDLSERLWKQLDSMGVD EMVK L+L
Subjt:  MASSKLGDDELQNLVFKLQTLLPHLNHKPD-DSAVSTA--EILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKSLLL

TrEMBL top hitse value%identityAlignment
A0A067K4V8 BHLH domain-containing protein1.2e-1255.56Show/hide
Query:  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSM---GVDFEMVKSLLL
        +SK+  +E+ +L+ KLQ LLPH+N +  DS VS ++ILKETC YI KLQ+EVDDLSE+L + LDSM    VD E + S+LL
Subjt:  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSM---GVDFEMVKSLLL

A0A0A0LQ05 DNA binding protein2.1e-2885Show/hide
Query:  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKSLL
        MASSKLGDDEL+NLV KLQTLLP LNHKP +S+ VS  EILKETCDYIKKLQ+EVDDLSERLWKQLDSMG+DFEMVK LL
Subjt:  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKSLL

A0A1S3B0J1 transcription factor PRE5-like5.5e-2985.19Show/hide
Query:  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKSLLL
        MASSKLGD+EL+NLV KL+TLLP LNHKPD+S+  ST EILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVK LL+
Subjt:  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKSLLL

A0A5A7SZP9 Transcription factor PRE5-like5.5e-2985.19Show/hide
Query:  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKSLLL
        MASSKLGD+EL+NLV KL+TLLP LNHKPD+S+  ST EILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVK LL+
Subjt:  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKSLLL

A0A5D3BKI2 Transcription factor PRE5-like8.8e-2786.67Show/hide
Query:  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEM
        MASSKLGD+EL+NLV KL+TLLP LNHKPD+S+  ST EILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEM
Subjt:  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEM

SwissProt top hitse value%identityAlignment
A2XD15 Transcription factor ILI39.4e-1042.31Show/hide
Query:  KLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSER---LWKQLDSMGVDFEMVKSLL
        ++ D+E+  L+ KLQ LLP  +     S  S +++LKETC YIK L +EVDDLS+R   L   +D+     E+++SLL
Subjt:  KLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSER---LWKQLDSMGVDFEMVKSLL

Q10R47 Transcription factor ILI39.4e-1042.31Show/hide
Query:  KLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSER---LWKQLDSMGVDFEMVKSLL
        ++ D+E+  L+ KLQ LLP  +     S  S +++LKETC YIK L +EVDDLS+R   L   +D+     E+++SLL
Subjt:  KLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSER---LWKQLDSMGVDFEMVKSLL

Q8GW32 Transcription factor PRE61.1e-1043.75Show/hide
Query:  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQL---DSMGVDFEMVKSLL
        SS++ DD++ +LV KLQ L+P L  +  D  VS +++L+ETC+YI+ L +EVDDLS+RL + L   D    +  +++SLL
Subjt:  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQL---DSMGVDFEMVKSLL

Q9CA64 Transcription factor PRE33.2e-1042.31Show/hide
Query:  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQL-DSMGVDFEMVKSLL
        +S++ +D++ +L+ KLQ LLP L        VS A +L++TC+YI+ L +EVDDLSERL + L +S      +++SLL
Subjt:  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQL-DSMGVDFEMVKSLL

Q9LJX1 Transcription factor PRE58.5e-1140.74Show/hide
Query:  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVD---FEMVKSLLL
        +S++ DD++ +LV KL+  LP ++ +     VS +++L+ETC+YI+KL +EVD+LS+RL + LDS+  D     +++SLL+
Subjt:  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVD---FEMVKSLLL

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein7.9e-1243.75Show/hide
Query:  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQL---DSMGVDFEMVKSLL
        SS++ DD++ +LV KLQ L+P L  +  D  VS +++L+ETC+YI+ L +EVDDLS+RL + L   D    +  +++SLL
Subjt:  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQL---DSMGVDFEMVKSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 12.3e-1142.31Show/hide
Query:  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQL-DSMGVDFEMVKSLL
        +S++ +D++ +L+ KLQ LLP L        VS A +L++TC+YI+ L +EVDDLSERL + L +S      +++SLL
Subjt:  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQL-DSMGVDFEMVKSLL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein6.0e-1240.74Show/hide
Query:  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVD---FEMVKSLLL
        +S++ DD++ +LV KL+  LP ++ +     VS +++L+ETC+YI+KL +EVD+LS+RL + LDS+  D     +++SLL+
Subjt:  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVD---FEMVKSLLL

AT3G47710.1 BANQUO 36.7e-1141.77Show/hide
Query:  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSM-GVDFEMVKSLLL
        +S + D+++ +LV +L  LLP L +      VS + +L+ETC YI+ L KEVDDLSERL + L+S       +++SLL+
Subjt:  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSM-GVDFEMVKSLLL

AT5G15160.1 BANQUO 28.7e-1140.3Show/hide
Query:  ASSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSM
        +SS++ DD++ +L+ KL+  +P +      + VS +++L+ETC+YI+ L KE DDLS+RL + L+S+
Subjt:  ASSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCCAAATTAGGCGATGACGAGCTTCAAAATCTCGTCTTCAAATTGCAAACTTTGCTCCCTCACCTCAACCATAAGCCCGACGACTCTGCAGTATCGACAGC
AGAGATATTGAAGGAGACGTGTGATTATATAAAGAAATTGCAAAAGGAGGTGGATGATTTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGGTGTTGACTTTGAGA
TGGTTAAGAGTCTTCTTCTTACTTAA
mRNA sequenceShow/hide mRNA sequence
CCAACTTTGCTTCTTTCATTCATGGCTTCCTCCAAATTAGGCGATGACGAGCTTCAAAATCTCGTCTTCAAATTGCAAACTTTGCTCCCTCACCTCAACCATAAGCCCGA
CGACTCTGCAGTATCGACAGCAGAGATATTGAAGGAGACGTGTGATTATATAAAGAAATTGCAAAAGGAGGTGGATGATTTAAGTGAGAGGCTATGGAAGCAGCTGGATT
CAATGGGTGTTGACTTTGAGATGGTTAAGAGTCTTCTTCTTACTTAAAAAGAAAAGAAAATGTTGGAATTAATATTTTGAGATGATTTTTTCTTAGTCTCACTGTGTGTT
TGTATTTTGAAACTGATGAGTTTGGTCTCTTCAGCATTACCAACCGACAGTTGAGAGAGAAAAATGGTGGATTTTAAATGTATTTTTCTATTTCTGTCCTTCTTCTATAT
ATGTTGGTCTCATGTTTAATATATGTATTATCTAATTCTATGCAACATCATTTCCCCT
Protein sequenceShow/hide protein sequence
MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKSLLLT