CuGenDBv2

Gene ID	Lsi02G001220
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein of unknown function (DUF1118)
Genome location	chr02:1012292..1013389
RNA-Seq Expression	Lsi02G001220
Synteny	Lsi02G001220
Gene Ontology terms	GO:0010027 - thylakoid membrane organization (biological process) GO:0010196 - nonphotochemical quenching (biological process) GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0090391 - granum assembly (biological process) GO:0009515 - granal stacked thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR009500 - Protein of unknown function DUF1118

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004137438.1 uncharacterized protein LOC101204037 [Cucumis sativus]

1.5e-82

89.85

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Query:  MDVSSFCSSS-RAASFVFSYPSKTNS-RKHPLHVHSMAAEKPPPSAAKTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEKAGLL
        M+V+SFCSSS RAASF++SYPS T S RK PLH+HSMA EKP PSAAKTVGSKKIN+TVFPLGEKGPR+SISLSTSPPIKLLTRVEQLKLLSKAEKAGLL
Subjt:  MDVSSFCSSS-RAASFVFSYPSKTNS-RKHPLHVHSMAAEKPPPSAAKTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEKAGLL

Query:  SAAEKAGLSLSSIEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRSN
        SAAEKAGLSLSSIEKLG LSKAE+LG+LSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEI LQVAVAL+S+VGGSAAFAASNLVSNLQRSN
Subjt:  SAAEKAGLSLSSIEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRSN

XP_008451074.1 PREDICTED: uncharacterized protein LOC103492437 [Cucumis melo]

7.8e-84

90.36

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Query:  MDVSSFCSSS-RAASFVFSYPSKTNS-RKHPLHVHSMAAEKPPPSAAKTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEKAGLL
        M+V+SFCSSS RAASF++SYPS T S RK PLH+HSMAAEKPPPSA+KTVGSKKIN+TVFPLGEKGPR+SISLSTSPPIKLLTRVEQLKLLSKAEKAGLL
Subjt:  MDVSSFCSSS-RAASFVFSYPSKTNS-RKHPLHVHSMAAEKPPPSAAKTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEKAGLL

Query:  SAAEKAGLSLSSIEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRSN
        SAAEKAGLSLSSIEKLG LSKAE+LG+LSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEI LQVAVAL+S+VGGSAAFAASNLVSNLQRSN
Subjt:  SAAEKAGLSLSSIEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRSN

XP_023520287.1 uncharacterized protein LOC111783600 [Cucurbita pepo subsp. pepo]

8.7e-83

89.8

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Query:  MDVSSFCSSSRAASFVFSYPSKTNSRKHPLHVHSMAAEKPPPSAAKTVGS-KKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLS
        M+V+SFC SSRAASFV+SYPSKTNSRK  L + SMA +KPPPSAAKTV S KK+NSTVFPLGEKGPR+SISLSTSPPIKLLTRVEQLKLLSKAEKAGLLS
Subjt:  MDVSSFCSSSRAASFVFSYPSKTNSRKHPLHVHSMAAEKPPPSAAKTVGS-KKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLS

Query:  AAEKAGLSLSSIEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRSN
        AAEKAGLSLSSIEKLGFLSKAE+LGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPE+SVWEIALQ AVAL+S+VGGSAAFAASNLVSNLQRSN
Subjt:  AAEKAGLSLSSIEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRSN

XP_023541355.1 uncharacterized protein LOC111801557 [Cucurbita pepo subsp. pepo]

2.6e-79

84.58

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Query:  MDVSSFCSSSRAASFVFSYPSKTNSRKH------PLHVHSMAAEKPPPSAAKTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEK
        M+++S  SS+RAASF++SYP KT S+        PLHVH+MAAEKPP SA KT+GSKKINSTVFPLGEKGPR+SISLSTSPPIKLLTRVEQL+LLSKAEK
Subjt:  MDVSSFCSSSRAASFVFSYPSKTNSRKH------PLHVHSMAAEKPPPSAAKTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEK

Query:  AGLLSAAEKAGLSLSSIEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRS
        AGLLSAAEKAGLSLSSIEKLG LSKAE+LGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEI LQ A AL+SVVGGSAAFAASNLVSNLQRS
Subjt:  AGLLSAAEKAGLSLSSIEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRS

Query:  N
        N
Subjt:  N

XP_038893804.1 uncharacterized protein LOC120082623 [Benincasa hispida]

4.7e-89

95.38

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Query:  MDVSSFCSSSRAASFVFSYPSKTNSRKHPLHVHSMAAEKPPPSAAKTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSA
        M+VSSFCSSSRAASFVFSYPSKTNSRK  LH+HSMAAEKPPPSAAKTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSA
Subjt:  MDVSSFCSSSRAASFVFSYPSKTNSRKHPLHVHSMAAEKPPPSAAKTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSA

Query:  AEKAGLSLSSIEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRSN
        AEKAGLSLSSIEKLG LSKAE+LGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVW+IALQV+VAL+SVVGGSAAFAASNLVSNLQRSN
Subjt:  AEKAGLSLSSIEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRSN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQ98 Uncharacterized protein

7.2e-83

89.85

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Query:  MDVSSFCSSS-RAASFVFSYPSKTNS-RKHPLHVHSMAAEKPPPSAAKTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEKAGLL
        M+V+SFCSSS RAASF++SYPS T S RK PLH+HSMA EKP PSAAKTVGSKKIN+TVFPLGEKGPR+SISLSTSPPIKLLTRVEQLKLLSKAEKAGLL
Subjt:  MDVSSFCSSS-RAASFVFSYPSKTNS-RKHPLHVHSMAAEKPPPSAAKTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEKAGLL

Query:  SAAEKAGLSLSSIEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRSN
        SAAEKAGLSLSSIEKLG LSKAE+LG+LSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEI LQVAVAL+S+VGGSAAFAASNLVSNLQRSN
Subjt:  SAAEKAGLSLSSIEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRSN

A0A1S3BQ40 uncharacterized protein LOC103492437

3.8e-84

90.36

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Query:  MDVSSFCSSS-RAASFVFSYPSKTNS-RKHPLHVHSMAAEKPPPSAAKTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEKAGLL
        M+V+SFCSSS RAASF++SYPS T S RK PLH+HSMAAEKPPPSA+KTVGSKKIN+TVFPLGEKGPR+SISLSTSPPIKLLTRVEQLKLLSKAEKAGLL
Subjt:  MDVSSFCSSS-RAASFVFSYPSKTNS-RKHPLHVHSMAAEKPPPSAAKTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEKAGLL

Query:  SAAEKAGLSLSSIEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRSN
        SAAEKAGLSLSSIEKLG LSKAE+LG+LSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEI LQVAVAL+S+VGGSAAFAASNLVSNLQRSN
Subjt:  SAAEKAGLSLSSIEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRSN

A0A5D3BGQ3 Uncharacterized protein

3.8e-84

90.36

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Query:  MDVSSFCSSS-RAASFVFSYPSKTNS-RKHPLHVHSMAAEKPPPSAAKTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEKAGLL
        M+V+SFCSSS RAASF++SYPS T S RK PLH+HSMAAEKPPPSA+KTVGSKKIN+TVFPLGEKGPR+SISLSTSPPIKLLTRVEQLKLLSKAEKAGLL
Subjt:  MDVSSFCSSS-RAASFVFSYPSKTNS-RKHPLHVHSMAAEKPPPSAAKTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEKAGLL

Query:  SAAEKAGLSLSSIEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRSN
        SAAEKAGLSLSSIEKLG LSKAE+LG+LSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEI LQVAVAL+S+VGGSAAFAASNLVSNLQRSN
Subjt:  SAAEKAGLSLSSIEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRSN

A0A6J1CAU4 uncharacterized protein LOC111009021

2.2e-79

87.06

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Query:  MDVSSFCSSSRAASFVFSYPSKTNSR------KHPLHVHSMAAEKPPPSAAKTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEK
        M+V+SFCSSSR  SFV+SYP KT SR        PL V SMAAEKP PSAAKTVGSKKINSTVFPLGEKGPR+SISLSTSP IKLLTRVEQLKLLSKAEK
Subjt:  MDVSSFCSSSRAASFVFSYPSKTNSR------KHPLHVHSMAAEKPPPSAAKTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEK

Query:  AGLLSAAEKAGLSLSSIEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRS
        AGLLSAAEKAGLSLSSIEKLG LSKAE+LG+LSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEI LQ AVAL+SVVGGSAAFAASNLVSNLQRS
Subjt:  AGLLSAAEKAGLSLSSIEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRS

Query:  N
        N
Subjt:  N

A0A6J1K230 uncharacterized protein LOC111490350

2.2e-79

84.58

Show/hide

Query:  MDVSSFCSSSRAASFVFSYPSKTNSRKH------PLHVHSMAAEKPPPSAAKTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEK
        M+V+S  SS+RAASF++SYP KT S+        PLHVH+MAAEKPP SA KT+GSKKINSTVFPLGEKGPR+SISLSTSPPIKLLTRVEQLKLLSKAEK
Subjt:  MDVSSFCSSSRAASFVFSYPSKTNSRKH------PLHVHSMAAEKPPPSAAKTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEK

Query:  AGLLSAAEKAGLSLSSIEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRS
        AGLLSAAEKAGLSLSSIEKLG LSKAE+LGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPED+VWEI LQ A AL+SV+GGSAAFAASNLVSNLQRS
Subjt:  AGLLSAAEKAGLSLSSIEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRS

Query:  N
        N
Subjt:  N

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G74730.1 Protein of unknown function (DUF1118)

3.0e-09

38.02

Show/hide

Query:  IKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGFLSKAEQLGILSAATD-PGT-PGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALIS
        + +  ++E+ K+LS  EK+GLLS AE  GL+LSS+EKL   SKAE LG+LS   +  GT P  L S +L  L      V L+P+DS   +  Q  +A   
Subjt:  IKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGFLSKAEQLGILSAATD-PGT-PGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALIS

Query:  VVGGSAAFAASNLVSNLQRSN
         + G      S ++  LQ ++
Subjt:  VVGGSAAFAASNLVSNLQRSN

AT5G08050.1 Protein of unknown function (DUF1118)

8.4e-44

62.28

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Query:  LHVHSMAAEKPPPSAA-KTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGFLSKAEQLGILSA
        L VHSMA +KP PSAA +T+ SKK  +T                  P +KLLTRVEQLKLL+KAEKAGLLS AEK+G SLS+IE+LG L+KAE+ G+LSA
Subjt:  LHVHSMAAEKPPPSAA-KTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGFLSKAEQLGILSA

Query:  ATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRSN
        AT+P TPG L +LSLGLLLLGP   Y+VPED  WE+ +QV VAL+SV+GGSAAFAAS  VSNLQ+S+
Subjt:  ATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRSN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATGTCTCTTCTTTCTGTAGCAGCAGCAGAGCAGCTTCGTTCGTCTTCTCATATCCATCCAAAACGAATTCAAGAAAACACCCTCTCCATGTACACTCCATGGCCGC
CGAGAAACCTCCCCCTTCTGCCGCTAAAACCGTCGGCTCCAAGAAGATAAACTCCACGGTGTTCCCTCTCGGCGAGAAAGGACCGAGGACCAGCATCTCGCTCTCCACCT
CACCGCCGATTAAGCTACTGACGAGAGTGGAACAATTGAAGCTATTGAGCAAGGCGGAGAAGGCCGGCCTGCTGTCTGCAGCGGAGAAAGCCGGGTTGTCTCTGTCGTCG
ATTGAGAAATTAGGGTTTCTGTCGAAGGCTGAGCAATTGGGGATTTTATCGGCAGCGACAGATCCAGGAACGCCAGGGGCGCTACTGAGCCTGAGCTTAGGGCTGTTGCT
ATTGGGACCTTCGTGTGTGTATTTGGTGCCGGAGGATAGTGTTTGGGAAATCGCGTTGCAGGTGGCGGTGGCTTTGATCTCTGTCGTGGGCGGCTCTGCGGCTTTTGCTG
CGTCGAATTTGGTGTCGAATTTGCAGAGATCGAATTGA

mRNA sequence

Show/hide mRNA sequence

AATAAAACGAGGAAACGTGGAAAATCCGATATCTCAATTCTGAAAACCAATCCAACTACCTGCCTTCTCCGTCATTCATTTCCATGGTGCGGGCCTCTGTAATTCTCTCA
TTCAGATTCAGCAATAACCATCGCCATTCTTCACACTTCACACACGCACTCGCTTCTAGATATGGATGTCTCTTCTTTCTGTAGCAGCAGCAGAGCAGCTTCGTTCGTCT
TCTCATATCCATCCAAAACGAATTCAAGAAAACACCCTCTCCATGTACACTCCATGGCCGCCGAGAAACCTCCCCCTTCTGCCGCTAAAACCGTCGGCTCCAAGAAGATA
AACTCCACGGTGTTCCCTCTCGGCGAGAAAGGACCGAGGACCAGCATCTCGCTCTCCACCTCACCGCCGATTAAGCTACTGACGAGAGTGGAACAATTGAAGCTATTGAG
CAAGGCGGAGAAGGCCGGCCTGCTGTCTGCAGCGGAGAAAGCCGGGTTGTCTCTGTCGTCGATTGAGAAATTAGGGTTTCTGTCGAAGGCTGAGCAATTGGGGATTTTAT
CGGCAGCGACAGATCCAGGAACGCCAGGGGCGCTACTGAGCCTGAGCTTAGGGCTGTTGCTATTGGGACCTTCGTGTGTGTATTTGGTGCCGGAGGATAGTGTTTGGGAA
ATCGCGTTGCAGGTGGCGGTGGCTTTGATCTCTGTCGTGGGCGGCTCTGCGGCTTTTGCTGCGTCGAATTTGGTGTCGAATTTGCAGAGATCGAATTGAATTTCAGTGTT
GGAGTTTTCCAATTGCAGCCATGGGAGTTGTAGTTATTATCAGCTTTCCTTCTCCTTCCATGTCGTCGGTTTGTATGCTGCAATTATTGAATTTATCATTTTCCGGCGAA
TTAAAATGGCAATATGTGAACGGCAAATTTTCTGCTCTCAATTTTATACCAATGCCGATACAAATTTAAATATTTAAGAATGCATTATATAACAACATTATATAATCAAA
CTTACCATTATGAAATGAAATAATTACATTATGC

Protein sequence

Show/hide protein sequence

MDVSSFCSSSRAASFVFSYPSKTNSRKHPLHVHSMAAEKPPPSAAKTVGSKKINSTVFPLGEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSS
IEKLGFLSKAEQLGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIALQVAVALISVVGGSAAFAASNLVSNLQRSN

Lsi02G001220 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome