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Lsi02G001520 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G001520
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontetraspanin-8-like
Genome locationchr02:1266590..1267353
RNA-Seq ExpressionLsi02G001520
SyntenyLsi02G001520
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044991 - Tetraspani, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652533.1 hypothetical protein Csa_013859 [Cucumis sativus]6.0e-5187.38Show/hide
Query:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH
        ++SGCCKPPSYCGFEF NATFW  PKAGPAVADSDCTTWSN QNALCY+CKSCKGGILANIRKEWR FAIFNSCVL VIT+IYCIGCCAT+SNHK NRY+
Subjt:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH

Query:  GYP
        GYP
Subjt:  GYP

TYJ98967.1 tetraspanin-8-like [Cucumis melo var. makuwa]4.9e-5389.32Show/hide
Query:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH
        ++SGCCKPPSYCGFEFKNATFW  PKAGP VAD+DCTTWSNKQNALCY+CKSCKGGILANIRKEWR FAIFNSCVL VIT+IYCIGCCATRSNHKHNRY+
Subjt:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH

Query:  GYP
        GYP
Subjt:  GYP

XP_008455318.1 PREDICTED: tetraspanin-8-like [Cucumis melo]4.9e-5389.32Show/hide
Query:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH
        ++SGCCKPPSYCGFEFKNATFW  PKAGP VAD+DCTTWSNKQNALCY+CKSCKGGILANIRKEWR FAIFNSCVL VIT+IYCIGCCATRSNHKHNRY+
Subjt:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH

Query:  GYP
        GYP
Subjt:  GYP

XP_023519334.1 tetraspanin-11-like [Cucurbita pepo subsp. pepo]2.8e-4881.55Show/hide
Query:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH
        ++SGCCKPPSYCGF+FKNATFWI P+AGPAV DSDCTTWSN QN LCY+CKSCKGGIL NIRKEWR  AIFNSC L VIT+IYCIGCCATR+NHK+NRY+
Subjt:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH

Query:  GYP
         YP
Subjt:  GYP

XP_031737410.1 tetraspanin-8 [Cucumis sativus]4.6e-5187.38Show/hide
Query:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH
        ++SGCCKPPSYCGFEF NATFW  PKAGPAVADSDCTTWSN QNALCY+CKSCKGGILANIRKEWR FAIFNSCVL VIT+IYCIGCCAT+SNHK NRY+
Subjt:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH

Query:  GYP
        GYP
Subjt:  GYP

TrEMBL top hitse value%identityAlignment
A0A0A0LQQ0 Uncharacterized protein2.9e-5187.38Show/hide
Query:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH
        ++SGCCKPPSYCGFEF NATFW  PKAGPAVADSDCTTWSN QNALCY+CKSCKGGILANIRKEWR FAIFNSCVL VIT+IYCIGCCAT+SNHK NRY+
Subjt:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH

Query:  GYP
        GYP
Subjt:  GYP

A0A1S3C078 tetraspanin-8-like2.4e-5389.32Show/hide
Query:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH
        ++SGCCKPPSYCGFEFKNATFW  PKAGP VAD+DCTTWSNKQNALCY+CKSCKGGILANIRKEWR FAIFNSCVL VIT+IYCIGCCATRSNHKHNRY+
Subjt:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH

Query:  GYP
        GYP
Subjt:  GYP

A0A5D3BIL8 Tetraspanin-8-like2.4e-5389.32Show/hide
Query:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH
        ++SGCCKPPSYCGFEFKNATFW  PKAGP VAD+DCTTWSNKQNALCY+CKSCKGGILANIRKEWR FAIFNSCVL VIT+IYCIGCCATRSNHKHNRY+
Subjt:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH

Query:  GYP
        GYP
Subjt:  GYP

A0A6J1E867 tetraspanin-11-like1.4e-4881.55Show/hide
Query:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH
        ++SGCCKPPSYCGF+FKNATFWI P+AGPAV DSDCTTWSN QN LCY+CKSCKGGIL NIRKEWR  AIFNSC L VIT+IYCIGCCATR+NHK+NRY+
Subjt:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH

Query:  GYP
         YP
Subjt:  GYP

A0A6J1KNL3 tetraspanin-11-like1.4e-4881.55Show/hide
Query:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH
        ++SGCCKPPSYCGF+FKNATFWI P+AGPAV DSDCTTWSN QN LCY+CKSCKGGIL NIRKEWR  AIFNSC L VIT+IYCIGCCATR+NHK+NRY+
Subjt:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH

Query:  GYP
         YP
Subjt:  GYP

SwissProt top hitse value%identityAlignment
Q8S8Q6 Tetraspanin-81.4e-2140.95Show/hide
Query:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHK---HN
        ++SGCCKP   CGFE+ N T W     G    + DC TW N +  LC++C+SCK G+L N++  W+  AI N   L  + ++Y +GCCA R+N +   ++
Subjt:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHK---HN

Query:  RYHGY
        R +GY
Subjt:  RYHGY

Q9FIQ5 Protein TORNADO 28.5e-2448.04Show/hide
Query:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH
        ++SGCCKPP+ CGF F N T+WI+P      AD DC  WSN QN LCY C SCK G+LANI+ +W    IF    L  + ++Y IGCCA R+    + + 
Subjt:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH

Query:  GY
         Y
Subjt:  GY

Q9FN51 Tetraspanin-124.7e-2245.56Show/hide
Query:  GCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSN
        GCC+PP  CGFE KNAT+W  P         DC  WSN Q  LCY C+SCK G+L  IRK WR   + N  ++ ++  +Y  GCC  ++N
Subjt:  GCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSN

Q9LPR6 Tetraspanin-112.3e-2957.89Show/hide
Query:  MRSGCCKPPSYCGFEFKNATFWIAP-KAGPAVADS-DCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSN
        ++SGCCKPPS C FEF+NATFWI P K   AVA++ DC TWSN Q  LC+NC +CK G+LANIR++WR+  +FN C+L ++  +Y  GCCA R+N
Subjt:  MRSGCCKPPSYCGFEFKNATFWIAP-KAGPAVADS-DCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSN

Q9ZUN5 Tetraspanin-22.7e-2244.12Show/hide
Query:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH
        ++SGCCKPP+ CG+ F N T W+ P      AD+DC  WSN Q+ LCYNC SCK G+L N+RKEWR   +     + V+  +Y I C A R+    + + 
Subjt:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH

Query:  GY
         Y
Subjt:  GY

Arabidopsis top hitse value%identityAlignment
AT1G18520.1 tetraspanin111.6e-3057.89Show/hide
Query:  MRSGCCKPPSYCGFEFKNATFWIAP-KAGPAVADS-DCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSN
        ++SGCCKPPS C FEF+NATFWI P K   AVA++ DC TWSN Q  LC+NC +CK G+LANIR++WR+  +FN C+L ++  +Y  GCCA R+N
Subjt:  MRSGCCKPPSYCGFEFKNATFWIAP-KAGPAVADS-DCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSN

AT2G19580.1 tetraspanin21.9e-2344.12Show/hide
Query:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH
        ++SGCCKPP+ CG+ F N T W+ P      AD+DC  WSN Q+ LCYNC SCK G+L N+RKEWR   +     + V+  +Y I C A R+    + + 
Subjt:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH

Query:  GY
         Y
Subjt:  GY

AT2G23810.1 tetraspanin89.7e-2340.95Show/hide
Query:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHK---HN
        ++SGCCKP   CGFE+ N T W     G    + DC TW N +  LC++C+SCK G+L N++  W+  AI N   L  + ++Y +GCCA R+N +   ++
Subjt:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHK---HN

Query:  RYHGY
        R +GY
Subjt:  RYHGY

AT5G23030.1 tetraspanin123.3e-2345.56Show/hide
Query:  GCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSN
        GCC+PP  CGFE KNAT+W  P         DC  WSN Q  LCY C+SCK G+L  IRK WR   + N  ++ ++  +Y  GCC  ++N
Subjt:  GCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSN

AT5G46700.1 Tetraspanin family protein6.1e-2548.04Show/hide
Query:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH
        ++SGCCKPP+ CGF F N T+WI+P      AD DC  WSN QN LCY C SCK G+LANI+ +W    IF    L  + ++Y IGCCA R+    + + 
Subjt:  MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYH

Query:  GY
         Y
Subjt:  GY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTTCTGGATGTTGCAAGCCACCGTCGTACTGTGGATTCGAGTTCAAGAACGCTACATTCTGGATAGCACCAAAAGCAGGGCCGGCGGTGGCGGACAGCGACTGCAC
CACCTGGAGCAACAAGCAGAATGCTCTGTGCTACAATTGCAAGTCCTGCAAGGGCGGAATTCTGGCCAACATCCGCAAGGAATGGAGGCATTTCGCCATTTTCAACTCTT
GTGTTCTCACAGTCATTACTCTCATCTATTGCATCGGCTGCTGCGCCACCAGAAGCAACCATAAGCATAACAGATACCATGGCTATCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGTTCTGGATGTTGCAAGCCACCGTCGTACTGTGGATTCGAGTTCAAGAACGCTACATTCTGGATAGCACCAAAAGCAGGGCCGGCGGTGGCGGACAGCGACTGCAC
CACCTGGAGCAACAAGCAGAATGCTCTGTGCTACAATTGCAAGTCCTGCAAGGGCGGAATTCTGGCCAACATCCGCAAGGAATGGAGGCATTTCGCCATTTTCAACTCTT
GTGTTCTCACAGTCATTACTCTCATCTATTGCATCGGCTGCTGCGCCACCAGAAGCAACCATAAGCATAACAGATACCATGGCTATCCTTAAATATTCTTTATGTTCTTG
ATTCCATGCTTTGGATATGTTTGGAGTAATTTTTTAAGTGCTTTTTACTCAAATTAAAGAAGCACTTAGACAGGGATTCCAAACAAATCCATCATTAGGTCGTATTTAGA
TTTATACGATGATAATGCAAAGTCCGAATGATAGTTATGTATAGATCCTTTGTGTGAAAATGTTTGGGTTGGGATTTGTTAAGTCCTGTGTCATGGTGATGTGTATGTTT
TTTTGTACCTTCTACTTGCATCACATATATATGTGGCCTGTTGTTCAGAATTTTTTGATTGTCTGTAATGAAAGGCTATATACAAAAGTTGTGCAGCTACTAAA
Protein sequenceShow/hide protein sequence
MRSGCCKPPSYCGFEFKNATFWIAPKAGPAVADSDCTTWSNKQNALCYNCKSCKGGILANIRKEWRHFAIFNSCVLTVITLIYCIGCCATRSNHKHNRYHGYP