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Lsi02G001540 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G001540
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTransmembrane protein, putative
Genome locationchr02:1273726..1274022
RNA-Seq ExpressionLsi02G001540
SyntenyLsi02G001540
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2298856.1 hypothetical protein GH714_028346 [Hevea brasiliensis]1.3e-1051.69Show/hide
Query:  PPLLPDLQQ--TPASVS-GGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPSQG---RNLLGFLKRKLERPCVEDVEVG
        PP   ++QQ   P +VS    AWHSSGSIGPFF VISVL +L+I+SCF+G ICSRR    P      R  LG++KR+       DVEVG
Subjt:  PPLLPDLQQ--TPASVS-GGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPSQG---RNLLGFLKRKLERPCVEDVEVG

KEH38020.1 transmembrane protein, putative [Medicago truncatula]6.9e-1247.62Show/hide
Query:  MATASSPPLL-PDLQQTPASVS--GGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPSQ---GRNLLGFLKRKLERPCVEDVEV-GVKGR
        MA+A+S  LL P  QQ+  ++S     AW SSGSIGPFF VI VLT+L+++SC+L  +C+RR E TP +   GR   G++KR+  R    DVEV GV  +
Subjt:  MATASSPPLL-PDLQQTPASVS--GGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPSQ---GRNLLGFLKRKLERPCVEDVEV-GVKGR

Query:  MELCD
        + +CD
Subjt:  MELCD

XP_012575091.1 uncharacterized protein LOC101512774 [Cicer arietinum]1.2e-1145.87Show/hide
Query:  MATASSPPLLPDLQQ-------TPASVSGGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPSQ---GRNLLGFLKRKLERPCVEDVEV-G
        MATA+S  LL   QQ          S S   AW SSGSI PFF VI +LT+L+++SC+L  +C+RR E TP +   GR  LG+LKR+       DVEV G
Subjt:  MATASSPPLLPDLQQ-------TPASVSGGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPSQ---GRNLLGFLKRKLERPCVEDVEV-G

Query:  VKGRMELCD
        V  ++ +CD
Subjt:  VKGRMELCD

XP_013463985.2 uncharacterized protein LOC25486805 [Medicago truncatula]6.9e-1247.62Show/hide
Query:  MATASSPPLL-PDLQQTPASVS--GGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPSQ---GRNLLGFLKRKLERPCVEDVEV-GVKGR
        MA+A+S  LL P  QQ+  ++S     AW SSGSIGPFF VI VLT+L+++SC+L  +C+RR E TP +   GR   G++KR+  R    DVEV GV  +
Subjt:  MATASSPPLL-PDLQQTPASVS--GGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPSQ---GRNLLGFLKRKLERPCVEDVEV-GVKGR

Query:  MELCD
        + +CD
Subjt:  MELCD

XP_022137289.1 uncharacterized protein LOC111008787 [Momordica charantia]4.1e-2573.91Show/hide
Query:  MATASSPPLLPDLQQTPASVSGGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPSQGRNLLGFLKRKLERPCVEDVEVGVKG
        MATASS PLLPD QQTPA    GG   SSGSIGPFF VISVLTLLSI+SCFLG ICSR  EETP Q RN L  LK +L+R CV+DVEVGVKG
Subjt:  MATASSPPLLPDLQQTPASVSGGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPSQGRNLLGFLKRKLERPCVEDVEVGVKG

TrEMBL top hitse value%identityAlignment
A0A072VIN4 Transmembrane protein, putative3.3e-1247.62Show/hide
Query:  MATASSPPLL-PDLQQTPASVS--GGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPSQ---GRNLLGFLKRKLERPCVEDVEV-GVKGR
        MA+A+S  LL P  QQ+  ++S     AW SSGSIGPFF VI VLT+L+++SC+L  +C+RR E TP +   GR   G++KR+  R    DVEV GV  +
Subjt:  MATASSPPLL-PDLQQTPASVS--GGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPSQ---GRNLLGFLKRKLERPCVEDVEV-GVKGR

Query:  MELCD
        + +CD
Subjt:  MELCD

A0A1S3EJH0 uncharacterized protein LOC1015127745.7e-1245.87Show/hide
Query:  MATASSPPLLPDLQQ-------TPASVSGGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPSQ---GRNLLGFLKRKLERPCVEDVEV-G
        MATA+S  LL   QQ          S S   AW SSGSI PFF VI +LT+L+++SC+L  +C+RR E TP +   GR  LG+LKR+       DVEV G
Subjt:  MATASSPPLLPDLQQ-------TPASVSGGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPSQ---GRNLLGFLKRKLERPCVEDVEV-G

Query:  VKGRMELCD
        V  ++ +CD
Subjt:  VKGRMELCD

A0A2N9HK44 Uncharacterized protein7.4e-1250.89Show/hide
Query:  MATASSPPLLPDLQQTPA--------SVSGGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPS-----QGRNLLGFLKRKLERPCVE--D
        MAT SS   LP  QQ PA        +V     W SSGSIGPFF V+SVL LLSI+SC LG IC+R   ET S     +GR  LG++KRK  R C+   D
Subjt:  MATASSPPLLPDLQQTPA--------SVSGGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPS-----QGRNLLGFLKRKLERPCVE--D

Query:  VEVGVKGRMELC
        VEVG+K  M +C
Subjt:  VEVGVKGRMELC

A0A396JCL6 Uncharacterized protein3.3e-1247.62Show/hide
Query:  MATASSPPLL-PDLQQTPASVS--GGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPSQ---GRNLLGFLKRKLERPCVEDVEV-GVKGR
        MA+A+S  LL P  QQ+  ++S     AW SSGSIGPFF VI VLT+L+++SC+L  +C+RR E TP +   GR   G++KR+  R    DVEV GV  +
Subjt:  MATASSPPLL-PDLQQTPASVS--GGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPSQ---GRNLLGFLKRKLERPCVEDVEV-GVKGR

Query:  MELCD
        + +CD
Subjt:  MELCD

A0A6J1C6U1 uncharacterized protein LOC1110087872.0e-2573.91Show/hide
Query:  MATASSPPLLPDLQQTPASVSGGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPSQGRNLLGFLKRKLERPCVEDVEVGVKG
        MATASS PLLPD QQTPA    GG   SSGSIGPFF VISVLTLLSI+SCFLG ICSR  EETP Q RN L  LK +L+R CV+DVEVGVKG
Subjt:  MATASSPPLLPDLQQTPASVSGGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPSQGRNLLGFLKRKLERPCVEDVEVGVKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G74055.1 unknown protein1.1e-1036.97Show/hide
Query:  MATASSPPLLPDLQQTPASVSGGGA------------------WHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEET----------PSQGRNLLG
        MA++SS   L  +QQ P    GG                     +SS SIGPFF VISVL +L+++SCFLG  C+R  + T            +   LLG
Subjt:  MATASSPPLLPDLQQTPASVSGGGA------------------WHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEET----------PSQGRNLLG

Query:  FLKRKLERPCVEDVEVGVK
        +L+RK  R    DVE G K
Subjt:  FLKRKLERPCVEDVEVGVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACCGCGTCATCGCCACCATTGTTACCTGACCTGCAGCAAACACCGGCCTCCGTCAGCGGCGGCGGCGCCTGGCATTCCTCTGGTTCTATTGGGCCATTCTTTGT
GGTGATCTCTGTTTTAACTCTGCTTTCGATTATGTCTTGCTTTCTGGGCGGAATTTGCAGCCGCAGATATGAAGAAACGCCGTCACAGGGAAGAAATTTGTTGGGATTTT
TGAAGAGGAAGTTGGAGAGGCCTTGTGTTGAAGACGTTGAGGTCGGTGTAAAAGGAAGAATGGAATTATGTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACCGCGTCATCGCCACCATTGTTACCTGACCTGCAGCAAACACCGGCCTCCGTCAGCGGCGGCGGCGCCTGGCATTCCTCTGGTTCTATTGGGCCATTCTTTGT
GGTGATCTCTGTTTTAACTCTGCTTTCGATTATGTCTTGCTTTCTGGGCGGAATTTGCAGCCGCAGATATGAAGAAACGCCGTCACAGGGAAGAAATTTGTTGGGATTTT
TGAAGAGGAAGTTGGAGAGGCCTTGTGTTGAAGACGTTGAGGTCGGTGTAAAAGGAAGAATGGAATTATGTGATTGA
Protein sequenceShow/hide protein sequence
MATASSPPLLPDLQQTPASVSGGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPSQGRNLLGFLKRKLERPCVEDVEVGVKGRMELCD