; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G001620 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G001620
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTransmembrane protein
Genome locationchr02:1335635..1336129
RNA-Seq ExpressionLsi02G001620
SyntenyLsi02G001620
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584374.1 hypothetical protein SDJN03_20306, partial [Cucurbita argyrosperma subsp. sororia]5.1e-6886.67Show/hide
Query:  MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIH-KKKNKHGGG
        M QATPE GGS SIS GGSVLA+PRRAAATLLVSLSTLVALCAK A+RASKKLQ KLKSKQLPRLEL S  + PKR LK+ISNTAITLIH KKKNK GGG
Subjt:  MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIH-KKKNKHGGG

Query:  DTEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY
        D  EEWGDGGVWQKAI+MGDKCEPL+FSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATS RQVY
Subjt:  DTEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY

XP_008456286.1 PREDICTED: uncharacterized protein LOC103496246 [Cucumis melo]9.2e-7895.15Show/hide
Query:  MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIHKKKNKH-GGG
        M Q+TPERGGS SISGGGSVLATPRRAAATLLVSLSTLVALCAKQA+RASKKLQIKLKSKQLPRLELRSP LRPKRFLKNISNTAITLIHKKKNK  GGG
Subjt:  MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIHKKKNKH-GGG

Query:  DTEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY
        D EEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY
Subjt:  DTEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY

XP_011650441.1 uncharacterized protein LOC105434785 [Cucumis sativus]2.0e-7290.3Show/hide
Query:  MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIHKKKNKHGGGD
        M Q+TPERGGS SISGGGSVLATPRRAAATL+VSLSTL+ALCAKQA+R SKKLQIKLKSKQLPRLELRSP LRPKRFLKNISN   TLIHKKKNK G GD
Subjt:  MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIHKKKNKHGGGD

Query:  T-EEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY
          EEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLAT+HRQVY
Subjt:  T-EEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY

XP_023001364.1 uncharacterized protein LOC111495524 [Cucurbita maxima]1.6e-6987.35Show/hide
Query:  MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIH--KKKNKHGG
        M QATPE GGS SIS GGSVLA+PRRAAATLLVSLSTLVALCAK A+RASKKLQ KLKSKQLPRLEL S  + PKR LK+ISNTAITLIH  KKKNKHG 
Subjt:  MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIH--KKKNKHGG

Query:  GDTEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY
        GDTEEEWGDGGVWQKAI+MGDKCEPL+FSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATS RQVY
Subjt:  GDTEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY

XP_038894891.1 uncharacterized protein LOC120083287 [Benincasa hispida]6.4e-7995.18Show/hide
Query:  MGQATPERGG--SISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIHKKKNKHGG
        MGQATPERGG  SISISGGGSVLATPRRAAATLL+SLSTLVALCAKQA+RASKKLQ KLKSKQLPRLELRSP LRPKRFLKNISNTAITLIHKKKNKHGG
Subjt:  MGQATPERGG--SISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIHKKKNKHGG

Query:  GDTEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY
        G+TEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSH QVY
Subjt:  GDTEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY

TrEMBL top hitse value%identityAlignment
A0A0A0LSY3 Uncharacterized protein9.6e-7390.3Show/hide
Query:  MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIHKKKNKHGGGD
        M Q+TPERGGS SISGGGSVLATPRRAAATL+VSLSTL+ALCAKQA+R SKKLQIKLKSKQLPRLELRSP LRPKRFLKNISN   TLIHKKKNK G GD
Subjt:  MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIHKKKNKHGGGD

Query:  T-EEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY
          EEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLAT+HRQVY
Subjt:  T-EEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY

A0A1S3C2V4 uncharacterized protein LOC1034962464.5e-7895.15Show/hide
Query:  MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIHKKKNKH-GGG
        M Q+TPERGGS SISGGGSVLATPRRAAATLLVSLSTLVALCAKQA+RASKKLQIKLKSKQLPRLELRSP LRPKRFLKNISNTAITLIHKKKNK  GGG
Subjt:  MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIHKKKNKH-GGG

Query:  DTEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY
        D EEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY
Subjt:  DTEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY

A0A5D3BIM5 Uncharacterized protein4.5e-7895.15Show/hide
Query:  MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIHKKKNKH-GGG
        M Q+TPERGGS SISGGGSVLATPRRAAATLLVSLSTLVALCAKQA+RASKKLQIKLKSKQLPRLELRSP LRPKRFLKNISNTAITLIHKKKNK  GGG
Subjt:  MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIHKKKNKH-GGG

Query:  DTEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY
        D EEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY
Subjt:  DTEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY

A0A6J1EAJ9 uncharacterized protein LOC1114313885.5e-6886.06Show/hide
Query:  MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIH-KKKNKHGGG
        M QATPE GGS S+S GGSVLA+PRRAAATLLVSLSTLVALCAK A+RASKKLQ KLKSKQLPRLEL S  + PKR LK+ISNTAITLIH KKKNK GGG
Subjt:  MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIH-KKKNKHGGG

Query:  DTEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY
        D  EEWGDGGVWQKAI+MGDKCEPL+FSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATS RQVY
Subjt:  DTEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY

A0A6J1KMI5 uncharacterized protein LOC1114955247.6e-7087.35Show/hide
Query:  MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIH--KKKNKHGG
        M QATPE GGS SIS GGSVLA+PRRAAATLLVSLSTLVALCAK A+RASKKLQ KLKSKQLPRLEL S  + PKR LK+ISNTAITLIH  KKKNKHG 
Subjt:  MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIH--KKKNKHGG

Query:  GDTEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY
        GDTEEEWGDGGVWQKAI+MGDKCEPL+FSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATS RQVY
Subjt:  GDTEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G49000.1 unknown protein1.4e-2340.83Show/hide
Query:  MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSK--------------QLPRLELRSPHLRPKRFLKNISNTAI
        M ++TPE   S S           +R + + LVS   ++ LCA+ A+R SKKL++K K +               +    + SP  RPK     +SN A+
Subjt:  MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSK--------------QLPRLELRSPHLRPKRFLKNISNTAI

Query:  TLIHKKKNKHGGGDTEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAF
        T++ +K          EE  + G+WQ+ ILMG KCEPLDFSGVIYYDSNG+ LNEVP RSPR +PLP++
Subjt:  TLIHKKKNKHGGGDTEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAF

AT1G71740.1 unknown protein1.3e-0553.66Show/hide
Query:  GGVWQKAILMGDKCEPLDFSGVIYYDSNGKQL----NEVPL
        G +WQK ILMG KC+  DFSGVI YD++G+ +    N +PL
Subjt:  GGVWQKAILMGDKCEPLDFSGVIYYDSNGKQL----NEVPL

AT3G14760.1 unknown protein9.4e-0462.96Show/hide
Query:  VWQKAILMGDKCEPLDFSGVIYYDSNG
        VWQ+ ILMG+KCE   FSG+I YD  G
Subjt:  VWQKAILMGDKCEPLDFSGVIYYDSNG

AT3G18560.1 unknown protein5.0e-2140.12Show/hide
Query:  VLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLE--LRSP---------------------------HLRPKRFLKNISNTAITLIH
        V +  +R + + LVS   L+ LCA+ ASR SKKL+ K K+++   LE  L SP                            +RPK     +SN A+T++ 
Subjt:  VLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLE--LRSP---------------------------HLRPKRFLKNISNTAITLIH

Query:  KKKNKHGGGDT---------EEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLP
        +K   + GG T         EE+  + GVWQ+ ILMG KCEPLD+SGVIYYD +G QL +VP RSPRAS +P
Subjt:  KKKNKHGGGDT---------EEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCAAGCAACACCGGAACGCGGCGGCTCCATCTCCATCTCCGGCGGTGGCTCTGTTCTGGCGACGCCGAGGCGAGCGGCGGCGACTTTGCTCGTCTCTTTATCGAC
TTTGGTAGCGCTCTGTGCGAAGCAAGCGAGCAGAGCATCAAAAAAGCTTCAAATCAAACTGAAATCGAAGCAATTGCCGCGATTAGAGTTGCGATCACCGCATCTCCGGC
CGAAGCGGTTTCTGAAGAACATAAGCAACACGGCGATCACGTTGATTCATAAGAAGAAGAATAAACACGGCGGCGGCGATACGGAAGAAGAGTGGGGAGACGGCGGAGTT
TGGCAGAAGGCGATCTTGATGGGAGATAAATGTGAACCGTTGGATTTCTCAGGCGTAATCTATTACGATAGTAACGGGAAGCAGCTGAACGAAGTGCCTTTACGATCGCC
ACGTGCCAGTCCGTTGCCTGCCTTTCTTGCAACCAGTCACCGCCAGGTATACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCCAAGCAACACCGGAACGCGGCGGCTCCATCTCCATCTCCGGCGGTGGCTCTGTTCTGGCGACGCCGAGGCGAGCGGCGGCGACTTTGCTCGTCTCTTTATCGAC
TTTGGTAGCGCTCTGTGCGAAGCAAGCGAGCAGAGCATCAAAAAAGCTTCAAATCAAACTGAAATCGAAGCAATTGCCGCGATTAGAGTTGCGATCACCGCATCTCCGGC
CGAAGCGGTTTCTGAAGAACATAAGCAACACGGCGATCACGTTGATTCATAAGAAGAAGAATAAACACGGCGGCGGCGATACGGAAGAAGAGTGGGGAGACGGCGGAGTT
TGGCAGAAGGCGATCTTGATGGGAGATAAATGTGAACCGTTGGATTTCTCAGGCGTAATCTATTACGATAGTAACGGGAAGCAGCTGAACGAAGTGCCTTTACGATCGCC
ACGTGCCAGTCCGTTGCCTGCCTTTCTTGCAACCAGTCACCGCCAGGTATACTAA
Protein sequenceShow/hide protein sequence
MGQATPERGGSISISGGGSVLATPRRAAATLLVSLSTLVALCAKQASRASKKLQIKLKSKQLPRLELRSPHLRPKRFLKNISNTAITLIHKKKNKHGGGDTEEEWGDGGV
WQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY