; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G001670 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G001670
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like
Genome locationchr02:1419119..1422999
RNA-Seq ExpressionLsi02G001670
SyntenyLsi02G001670
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0030163 - protein catabolic process (biological process)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsIPR003769 - Adaptor protein ClpS, core
IPR014719 - Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like
IPR022935 - ATP-dependent Clp protease adaptor protein ClpS


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137466.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus]7.8e-8294.94Show/hide
Query:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVL
        MEAAICGR+PLSPN FF STKPGDKYYFHKQCRNRS LMM+SVAELG+GGGLLEKP IEKTTPGRESEFDVRKSRKTSPPYRVLLHNDN+NKREYVVQVL
Subjt:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVL

Query:  MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

XP_008456997.1 PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucumis melo]2.0e-8295.57Show/hide
Query:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVL
        MEAAICGR+PLSPN FF STKPGDKYYFHKQCRNRS LMM+SVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDN+NKREYVVQVL
Subjt:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVL

Query:  MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

XP_022136971.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Momordica charantia]3.2e-8395.57Show/hide
Query:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVL
        MEAAICGR+PLSPNHFFN T+PGDKYYFHKQCRNRS LMMLSVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKT+PPYRVLLHNDNYNKREYVVQVL
Subjt:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVL

Query:  MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        MKVIPGMTLDNAVNIMQEAHYNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

XP_022994956.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima]1.5e-8093.67Show/hide
Query:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVL
        MEAAICGRLPLSP HFFNST+PGDKYYFHKQCRNRSIL MLSVAELG+GGGLLEKPT EKTTPGRESEF+VRKSRK +PPYRVLLHNDN+NKREYVVQVL
Subjt:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVL

Query:  MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        MKVIPGMT+DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

XP_038894047.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa hispida]5.4e-8396.2Show/hide
Query:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVL
        MEAAICGR+ LSPNHFF+STKPGDKYYFHKQCRNRS+LMMLSVAELG+GGGLLEKPTIEKTTPGRESEFDVRK RKTSPPYRVLLHNDNYNKREYVVQVL
Subjt:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVL

Query:  MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

TrEMBL top hitse value%identityAlignment
A0A0A0LSY6 ClpS domain-containing protein3.8e-8294.94Show/hide
Query:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVL
        MEAAICGR+PLSPN FF STKPGDKYYFHKQCRNRS LMM+SVAELG+GGGLLEKP IEKTTPGRESEFDVRKSRKTSPPYRVLLHNDN+NKREYVVQVL
Subjt:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVL

Query:  MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

A0A1S3C561 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like9.9e-8395.57Show/hide
Query:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVL
        MEAAICGR+PLSPN FF STKPGDKYYFHKQCRNRS LMM+SVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDN+NKREYVVQVL
Subjt:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVL

Query:  MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

A0A6J1C511 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X11.5e-8395.57Show/hide
Query:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVL
        MEAAICGR+PLSPNHFFN T+PGDKYYFHKQCRNRS LMMLSVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKT+PPYRVLLHNDNYNKREYVVQVL
Subjt:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVL

Query:  MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        MKVIPGMTLDNAVNIMQEAHYNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

A0A6J1GS56 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic2.7e-8093.04Show/hide
Query:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVL
        MEAAICGRLPLSP HFFNST+PGDKYYFHKQCRNRSIL MLSVAELG+GGGLLEKP  EKTTPGRESEF+VRKSRK +PPYRVLLHNDN+NKREYVVQVL
Subjt:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVL

Query:  MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        MKVIPGMT+DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

A0A6J1K0P0 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like7.1e-8193.67Show/hide
Query:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVL
        MEAAICGRLPLSP HFFNST+PGDKYYFHKQCRNRSIL MLSVAELG+GGGLLEKPT EKTTPGRESEF+VRKSRK +PPYRVLLHNDN+NKREYVVQVL
Subjt:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVL

Query:  MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        MKVIPGMT+DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  MKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

SwissProt top hitse value%identityAlignment
A0A2K3CNL6 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic1.4e-2253.21Show/hide
Query:  GGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLS
        GG+++ PT   TT  ++    V +S+K  P Y+VLLHNDNYNKREYVV+VL+KV+  +T+D+AV  MQEAH  G+A+V+ C Q +AE +C  LR NGL S
Subjt:  GGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLS

Query:  SIEPASDGC
        +IEP   GC
Subjt:  SIEPASDGC

Q31QE7 ATP-dependent Clp protease adapter protein ClpS8.2e-1856.96Show/hide
Query:  RKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEP
        RK +P YRVLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    AE +C QL+ +GL SSIEP
Subjt:  RKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEP

Q3AUR5 ATP-dependent Clp protease adapter protein ClpS9.4e-1443.14Show/hide
Query:  EKPTIEKTTPGRESEFD--VRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSI
        E PT    +PG  +  D    + RK SP Y+VLLHND  N  EYV+  L +V+P ++  +A+ +M EAH  G+ +VI+C    AE +C  L+  GL SSI
Subjt:  EKPTIEKTTPGRESEFD--VRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSI

Query:  EP
        EP
Subjt:  EP

Q5N3U1 ATP-dependent Clp protease adapter protein ClpS3.8e-1554.79Show/hide
Query:  RKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGL
        RK +P YRVLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    AE +C QL+ +GL
Subjt:  RKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGL

Q9SX29 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic4.9e-6375.62Show/hide
Query:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHK-QCRNRSILMMLSV-AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQ
        ME AICGRL L+P+  FNS K GDK+   K  C NRSILM LS  A LG+GGG+L+KP IEKTTPGRESEFD+RKS+K +PPYRV+LHNDN+NKREYVVQ
Subjt:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHK-QCRNRSILMMLSV-AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQ

Query:  VLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        VLMKVIPGMT+DNAVNIMQEAH NG+AVVI+CAQ DAE HCMQLRGNGLLSS+EP   GC
Subjt:  VLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

Arabidopsis top hitse value%identityAlignment
AT1G68660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein3.5e-6475.62Show/hide
Query:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHK-QCRNRSILMMLSV-AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQ
        ME AICGRL L+P+  FNS K GDK+   K  C NRSILM LS  A LG+GGG+L+KP IEKTTPGRESEFD+RKS+K +PPYRV+LHNDN+NKREYVVQ
Subjt:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHK-QCRNRSILMMLSV-AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQ

Query:  VLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        VLMKVIPGMT+DNAVNIMQEAH NG+AVVI+CAQ DAE HCMQLRGNGLLSS+EP   GC
Subjt:  VLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

AT1G68660.2 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein2.0e-4359.38Show/hide
Query:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHK-QCRNRSILMMLSV-AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQ
        ME AICGRL L+P+  FNS K GDK+   K  C NRSILM LS  A LG+GGG+L+KP IEKTTPGRESEFD+RKS+K +PPYRV+LHNDN+NKREYVVQ
Subjt:  MEAAICGRLPLSPNHFFNSTKPGDKYYFHK-QCRNRSILMMLSV-AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQ

Query:  VLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        VLMK                               DAE HCMQLRGNGLLSS+EP   GC
Subjt:  VLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCTGCAATTTGCGGTCGACTACCTCTTTCACCCAACCATTTCTTCAACTCAACTAAGCCAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCAT
CTTAATGATGTTATCAGTTGCTGAGCTTGGAAGGGGTGGGGGGTTGTTGGAGAAGCCAACAATAGAGAAGACAACACCTGGCCGTGAATCTGAGTTTGATGTTAGGAAAT
CAAGGAAAACTTCTCCACCTTATCGAGTGTTGCTACATAACGACAATTACAACAAGCGGGAATACGTTGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACCCTTGAC
AATGCAGTCAACATAATGCAGGAGGCACATTACAATGGGATGGCAGTGGTAATTATCTGCGCTCAAGTGGATGCAGAAGATCACTGCATGCAGCTGAGAGGCAATGGTCT
TCTAAGTTCAATCGAGCCTGCAAGTGATGGTTGTTGA
mRNA sequenceShow/hide mRNA sequence
AAGATCGCGAGAGTGGGACCCGCGACGAGTAGCATTAGCGAAGAGAGAACCCACGCGTCAGCAACTAAGCCACTCAGTCGAAGCTCGTTTACATTTTTCTGTGAGCCACT
GAACCTGCTGCACCAAATCACTCTTCATCCTTCAACAGTTCTTCAAGCAGGGCGAGCGAGAGCGAAAGAGAGGGCGAGAGAGGCCATGGAAGCTGCAATTTGCGGTCGAC
TACCTCTTTCACCCAACCATTTCTTCAACTCAACTAAGCCAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCATCTTAATGATGTTATCAGTTGCTGAG
CTTGGAAGGGGTGGGGGGTTGTTGGAGAAGCCAACAATAGAGAAGACAACACCTGGCCGTGAATCTGAGTTTGATGTTAGGAAATCAAGGAAAACTTCTCCACCTTATCG
AGTGTTGCTACATAACGACAATTACAACAAGCGGGAATACGTTGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACCCTTGACAATGCAGTCAACATAATGCAGGAGG
CACATTACAATGGGATGGCAGTGGTAATTATCTGCGCTCAAGTGGATGCAGAAGATCACTGCATGCAGCTGAGAGGCAATGGTCTTCTAAGTTCAATCGAGCCTGCAAGT
GATGGTTGTTGAATAGGAAACATAGATTATGACTGAAAGAGAGATGAATGGGCTGCACCAACTCTTGCAGGACTCAACTTGGACTGCCCTTGAATTACTGCAGCAGCTGC
AGGTAGGTCCAATATCCAACCTAGACTGCTATTATTTCTTTCCTTATTTATTATAACATGACAAATTAACTTCGAAAAATGTTATGAACAATCATGGACTTTTCTATCAT
ATAATAGAAGTAGGTGAACTAAGGTACCAAAGTATTTCCATTGTATTTATCATTCCTTTTAAAAGATTGCTTTCTTAAGT
Protein sequenceShow/hide protein sequence
MEAAICGRLPLSPNHFFNSTKPGDKYYFHKQCRNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLD
NAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC