; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G001700 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G001700
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionpeptidyl-tRNA hydrolase, chloroplastic
Genome locationchr02:1435782..1436528
RNA-Seq ExpressionLsi02G001700
SyntenyLsi02G001700
Gene Ontology termsGO:0004045 - aminoacyl-tRNA hydrolase activity (molecular function)
InterPro domainsIPR001328 - Peptidyl-tRNA hydrolase
IPR036416 - Peptidyl-tRNA hydrolase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137468.1 peptidyl-tRNA hydrolase, chloroplastic [Cucumis sativus]1.2e-4681.68Show/hide
Query:  MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNV
        M IG SISS+AALRLP   HCF TSKTLIS PSL+ L+S T HIFSS+TSSITASMSTSSSPTT+Q  +DDKKPAPPPKPWLIVGLGNPGKKYDRTRHN 
Subjt:  MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNV

Query:  RMVGFEMVDTVAEAEGISMSSVSFKALIGKG
          VGFEMVD VAEAEGIS+S+VSFKALIGKG
Subjt:  RMVGFEMVDTVAEAEGISMSSVSFKALIGKG

XP_008457243.1 PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Cucumis melo]7.2e-4781.68Show/hide
Query:  MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNV
        MNIG SISS+AALRLP  +H FRTS+TLIS PSL+ L+S T H FSS+TSSITASMSTSSSPTTDQ  +DDKKPAPPPKPWLIVGLGNPGKKYDRTRHN 
Subjt:  MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNV

Query:  RMVGFEMVDTVAEAEGISMSSVSFKALIGKG
          VGFEMVD VAEAEGIS+S+VSFKALIGKG
Subjt:  RMVGFEMVDTVAEAEGISMSSVSFKALIGKG

XP_022994701.1 peptidyl-tRNA hydrolase, chloroplastic-like isoform X1 [Cucurbita maxima]1.4e-4576.98Show/hide
Query:  MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNV
        MNI  S+SS+AALRLPICLHCF T +T IS PSL+ LN  + HIFSSMTSSITASMSTSS    DQL V++KKPAPPPKPWLIVGLGNPGKKY+RTRHN 
Subjt:  MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNV

Query:  RMVGFEMVDTVAEAEGISMSSVSFKALIGKGMQFLTILD
          VGFEM+D VAE EGISMSS SFKALIGKG+Q LTILD
Subjt:  RMVGFEMVDTVAEAEGISMSSVSFKALIGKGMQFLTILD

XP_038893864.1 peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Benincasa hispida]1.1e-5592.42Show/hide
Query:  MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMT-SSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHN
        MN+G SISS+ ALRLPICLHCFRTSKTLIS PSL+FLNSGTSHIFSSMT SSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHN
Subjt:  MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMT-SSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHN

Query:  VRMVGFEMVDTVAEAEGISMSSVSFKALIGKG
           VGFEMVDTVAEAEGISMSSVSFKALIGKG
Subjt:  VRMVGFEMVDTVAEAEGISMSSVSFKALIGKG

XP_038893867.1 peptidyl-tRNA hydrolase, mitochondrial isoform X2 [Benincasa hispida]1.1e-5592.42Show/hide
Query:  MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMT-SSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHN
        MN+G SISS+ ALRLPICLHCFRTSKTLIS PSL+FLNSGTSHIFSSMT SSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHN
Subjt:  MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMT-SSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHN

Query:  VRMVGFEMVDTVAEAEGISMSSVSFKALIGKG
           VGFEMVDTVAEAEGISMSSVSFKALIGKG
Subjt:  VRMVGFEMVDTVAEAEGISMSSVSFKALIGKG

TrEMBL top hitse value%identityAlignment
A0A0A0LVQ7 Uncharacterized protein5.9e-4781.68Show/hide
Query:  MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNV
        M IG SISS+AALRLP   HCF TSKTLIS PSL+ L+S T HIFSS+TSSITASMSTSSSPTT+Q  +DDKKPAPPPKPWLIVGLGNPGKKYDRTRHN 
Subjt:  MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNV

Query:  RMVGFEMVDTVAEAEGISMSSVSFKALIGKG
          VGFEMVD VAEAEGIS+S+VSFKALIGKG
Subjt:  RMVGFEMVDTVAEAEGISMSSVSFKALIGKG

A0A1S3C5R3 peptidyl-tRNA hydrolase, chloroplastic3.5e-4781.68Show/hide
Query:  MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNV
        MNIG SISS+AALRLP  +H FRTS+TLIS PSL+ L+S T H FSS+TSSITASMSTSSSPTTDQ  +DDKKPAPPPKPWLIVGLGNPGKKYDRTRHN 
Subjt:  MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNV

Query:  RMVGFEMVDTVAEAEGISMSSVSFKALIGKG
          VGFEMVD VAEAEGIS+S+VSFKALIGKG
Subjt:  RMVGFEMVDTVAEAEGISMSSVSFKALIGKG

A0A6J1JW15 peptidyl-tRNA hydrolase, mitochondrial isoform X11.2e-4277.1Show/hide
Query:  MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNV
        MNI  S+SS+AALRLPICLHCF T +T IS PSL+ LN  + HIFSSMTSSITASMSTSS    DQL V++KKPAPPPKPWLIVGLGNPGKKY+RTRHN 
Subjt:  MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNV

Query:  RMVGFEMVDTVAEAEGISMSSVSFKALIGKG
          VGFEM+D VAE EGISMSS SFKALIGKG
Subjt:  RMVGFEMVDTVAEAEGISMSSVSFKALIGKG

A0A6J1JZW9 peptidyl-tRNA hydrolase, chloroplastic-like isoform X16.6e-4676.98Show/hide
Query:  MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNV
        MNI  S+SS+AALRLPICLHCF T +T IS PSL+ LN  + HIFSSMTSSITASMSTSS    DQL V++KKPAPPPKPWLIVGLGNPGKKY+RTRHN 
Subjt:  MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNV

Query:  RMVGFEMVDTVAEAEGISMSSVSFKALIGKGMQFLTILD
          VGFEM+D VAE EGISMSS SFKALIGKG+Q LTILD
Subjt:  RMVGFEMVDTVAEAEGISMSSVSFKALIGKGMQFLTILD

A0A6J1K317 peptidyl-tRNA hydrolase, chloroplastic isoform X31.2e-4277.1Show/hide
Query:  MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNV
        MNI  S+SS+AALRLPICLHCF T +T IS PSL+ LN  + HIFSSMTSSITASMSTSS    DQL V++KKPAPPPKPWLIVGLGNPGKKY+RTRHN 
Subjt:  MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNV

Query:  RMVGFEMVDTVAEAEGISMSSVSFKALIGKG
          VGFEM+D VAE EGISMSS SFKALIGKG
Subjt:  RMVGFEMVDTVAEAEGISMSSVSFKALIGKG

SwissProt top hitse value%identityAlignment
Q10LI6 CRS2-like protein, chloroplastic2.3e-1160.38Show/hide
Query:  PWLIVGLGNPGKKYDRTRHNVRMVGFEMVDTVAEAEGISMSSVSFKALIGKGM
        PWL VGLGNPG+KY  TRHN   VGF+M+D  A+++GIS++   FKAL G+GM
Subjt:  PWLIVGLGNPGKKYDRTRHNVRMVGFEMVDTVAEAEGISMSSVSFKALIGKGM

Q5N9Q7 Peptidyl-tRNA hydrolase, mitochondrial3.4e-1571.7Show/hide
Query:  KPWLIVGLGNPGKKYDRTRHNVRMVGFEMVDTVAEAEGISMSSVSFKALIGKG
        KPWL VGLGNPGK Y  TRHN   VGFEM+D +AEAEGIS+SS+ FKA++GKG
Subjt:  KPWLIVGLGNPGKKYDRTRHNVRMVGFEMVDTVAEAEGISMSSVSFKALIGKG

Q6NLS8 Peptidyl-tRNA hydrolase, mitochondrial2.3e-1158.49Show/hide
Query:  KPWLIVGLGNPGKKYDRTRHNVRMVGFEMVDTVAEAEGISMSSVSFKALIGKG
        +PWL +GLGNPG KY  TRHN   +GFEM+D  AE+ GI M+ V+FKA++G+G
Subjt:  KPWLIVGLGNPGKKYDRTRHNVRMVGFEMVDTVAEAEGISMSSVSFKALIGKG

Q8GW64 Peptidyl-tRNA hydrolase, chloroplastic6.8e-1646.04Show/hide
Query:  SSIAALRLP--ICLHCFRTSKTLIS----VPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQ--------LPVDDKKPAPPPKPWLIVGLGNPGKKY
        + IA L  P   C   FR+  T +S       LT    G   + S   SS + S+S SS+  + Q        LP    K  P   PWLIVGLGNPGKKY
Subjt:  SSIAALRLP--ICLHCFRTSKTLIS----VPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQ--------LPVDDKKPAPPPKPWLIVGLGNPGKKY

Query:  DRTRHNVRMVGFEMVDTVAEAEGISMSSVSFKALIGKGM
          TRHN   VGFEMVD +A+AEGISM++V+FKAL GKG+
Subjt:  DRTRHNVRMVGFEMVDTVAEAEGISMSSVSFKALIGKGM

Q9LF14 Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic2.3e-1163.46Show/hide
Query:  PWLIVGLGNPGKKYDRTRHNVRMVGFEMVDTVAEAEGISMSSVSFKALIGKG
        PWLIVGLGNPG KY  TRHN   VGFEM+D +A  EG+ M+++  KALIG G
Subjt:  PWLIVGLGNPGKKYDRTRHNVRMVGFEMVDTVAEAEGISMSSVSFKALIGKG

Arabidopsis top hitse value%identityAlignment
AT1G18440.1 Peptidyl-tRNA hydrolase family protein4.8e-1746.04Show/hide
Query:  SSIAALRLP--ICLHCFRTSKTLIS----VPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQ--------LPVDDKKPAPPPKPWLIVGLGNPGKKY
        + IA L  P   C   FR+  T +S       LT    G   + S   SS + S+S SS+  + Q        LP    K  P   PWLIVGLGNPGKKY
Subjt:  SSIAALRLP--ICLHCFRTSKTLIS----VPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQ--------LPVDDKKPAPPPKPWLIVGLGNPGKKY

Query:  DRTRHNVRMVGFEMVDTVAEAEGISMSSVSFKALIGKGM
          TRHN   VGFEMVD +A+AEGISM++V+FKAL GKG+
Subjt:  DRTRHNVRMVGFEMVDTVAEAEGISMSSVSFKALIGKGM

AT5G16140.1 Peptidyl-tRNA hydrolase family protein1.6e-1263.46Show/hide
Query:  PWLIVGLGNPGKKYDRTRHNVRMVGFEMVDTVAEAEGISMSSVSFKALIGKG
        PWLIVGLGNPG KY  TRHN   VGFEM+D +A  EG+ M+++  KALIG G
Subjt:  PWLIVGLGNPGKKYDRTRHNVRMVGFEMVDTVAEAEGISMSSVSFKALIGKG

AT5G16140.2 Peptidyl-tRNA hydrolase family protein1.6e-1263.46Show/hide
Query:  PWLIVGLGNPGKKYDRTRHNVRMVGFEMVDTVAEAEGISMSSVSFKALIGKG
        PWLIVGLGNPG KY  TRHN   VGFEM+D +A  EG+ M+++  KALIG G
Subjt:  PWLIVGLGNPGKKYDRTRHNVRMVGFEMVDTVAEAEGISMSSVSFKALIGKG

AT5G19830.1 Peptidyl-tRNA hydrolase family protein1.6e-1258.49Show/hide
Query:  KPWLIVGLGNPGKKYDRTRHNVRMVGFEMVDTVAEAEGISMSSVSFKALIGKG
        +PWL +GLGNPG KY  TRHN   +GFEM+D  AE+ GI M+ V+FKA++G+G
Subjt:  KPWLIVGLGNPGKKYDRTRHNVRMVGFEMVDTVAEAEGISMSSVSFKALIGKG

AT5G38290.2 Peptidyl-tRNA hydrolase family protein4.0e-1151.22Show/hide
Query:  SITASMSTSSSPTTDQLPVDDKKPAP-PPKPWLIVGLGNPGKKYDRTRHNVRMVGFEMVDTVAEAEGISMSSVSFKALIGKG
        S T S S   S     LPV D K       PWLIVGLGNPG KY  TRHN   +GFEM+D +A A  ISM+++  KAL+G G
Subjt:  SITASMSTSSSPTTDQLPVDDKKPAP-PPKPWLIVGLGNPGKKYDRTRHNVRMVGFEMVDTVAEAEGISMSSVSFKALIGKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATATTGGTGTTTCTATATCTTCAATCGCCGCCCTGCGCCTTCCTATTTGCCTCCATTGCTTTCGAACCTCCAAAACCCTCATTTCTGTCCCTTCTCTAACCTTCCT
TAATTCTGGAACTTCTCATATCTTTTCGTCAATGACTTCTTCCATTACTGCGTCGATGTCTACTTCCTCGTCTCCGACCACCGATCAGCTGCCTGTAGATGACAAGAAGC
CCGCGCCGCCGCCGAAGCCATGGCTCATCGTGGGCCTCGGGAATCCTGGCAAGAAGTACGATCGTACGCGCCATAATGTCCGTATGGTAGGTTTTGAGATGGTGGATACT
GTAGCTGAAGCTGAAGGGATATCCATGAGCAGTGTTTCCTTCAAAGCTTTGATCGGGAAAGGTATGCAGTTTTTAACAATTCTTGACAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATATTGGTGTTTCTATATCTTCAATCGCCGCCCTGCGCCTTCCTATTTGCCTCCATTGCTTTCGAACCTCCAAAACCCTCATTTCTGTCCCTTCTCTAACCTTCCT
TAATTCTGGAACTTCTCATATCTTTTCGTCAATGACTTCTTCCATTACTGCGTCGATGTCTACTTCCTCGTCTCCGACCACCGATCAGCTGCCTGTAGATGACAAGAAGC
CCGCGCCGCCGCCGAAGCCATGGCTCATCGTGGGCCTCGGGAATCCTGGCAAGAAGTACGATCGTACGCGCCATAATGTCCGTATGGTAGGTTTTGAGATGGTGGATACT
GTAGCTGAAGCTGAAGGGATATCCATGAGCAGTGTTTCCTTCAAAGCTTTGATCGGGAAAGGTATGCAGTTTTTAACAATTCTTGACAGTTGA
Protein sequenceShow/hide protein sequence
MNIGVSISSIAALRLPICLHCFRTSKTLISVPSLTFLNSGTSHIFSSMTSSITASMSTSSSPTTDQLPVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNVRMVGFEMVDT
VAEAEGISMSSVSFKALIGKGMQFLTILDS