CuGenDBv2

Gene ID	Lsi02G001730
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	aspartyl protease APCB1
Genome location	chr02:1458264..1459986
RNA-Seq Expression	Lsi02G001730
Synteny	Lsi02G001730
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0004190 - aspartic-type endopeptidase activity (molecular function)
InterPro domains	IPR001461 - Aspartic peptidase A1 family IPR021109 - Aspartic peptidase domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

TYJ98986.1 aspartyl protease APCB1 isoform X2 [Cucumis melo var. makuwa]

1.5e-60

92.25

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Query:  RSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSLDIIVFSEGITLLNLQYLYSAVGFLPYFDC
        RSVKD+K FFKPLTLQFGSRFW+VSTKLVI PENYLLI+KEGNVCLGILDGSQVHDGSTIILGGIDDQG LDIIVF EGITLLNLQYLYSAVGFLPYFDC
Subjt:  RSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSLDIIVFSEGITLLNLQYLYSAVGFLPYFDC

Query:  YILRVKLSTNAYPALLLFYQMGLQLYQDD
        YILR KL TNAYPA+LLFYQMGLQLYQDD
Subjt:  YILRVKLSTNAYPALLLFYQMGLQLYQDD

XP_004137470.1 aspartyl protease APCB1 [Cucumis sativus]

6.0e-25

87.32

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Query:  RSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL
        RSVKDVK FFKPLTLQFGSRFW+VSTKLVI PENYLLINKEGNVCLGILDGSQVHDGSTIILG    +G L
Subjt:  RSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL

XP_008457519.1 PREDICTED: aspartyl protease APCB1 isoform X1 [Cucumis melo]

3.7e-27

85.33

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Query:  MNACRSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL
        MNACRSVKD+K FFKPLTLQFGSRFW+VSTKLVI PENYLLI+KEGNVCLGILDGSQVHDGSTIILG    +G L
Subjt:  MNACRSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL

XP_022137559.1 aspartyl protease APCB1 [Momordica charantia]

1.0e-24

81.08

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Query:  NACRSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL
        ++ RSVKDVK FFKPLTLQFGSRFW+VSTKL I PENYL+INKEGNVCLGILDGSQVHDGSTIILG    +G L
Subjt:  NACRSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL

XP_038895026.1 aspartyl protease APCB1 [Benincasa hispida]

1.4e-26

90.14

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Query:  RSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL
        RSVKDVK FFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILG    +G L
Subjt:  RSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQR7 Peptidase A1 domain-containing protein

2.9e-25

87.32

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Query:  RSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL
        RSVKDVK FFKPLTLQFGSRFW+VSTKLVI PENYLLINKEGNVCLGILDGSQVHDGSTIILG    +G L
Subjt:  RSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL

A0A1S3C5U5 aspartyl protease APCB1 isoform X1

1.8e-27

85.33

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Query:  MNACRSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL
        MNACRSVKD+K FFKPLTLQFGSRFW+VSTKLVI PENYLLI+KEGNVCLGILDGSQVHDGSTIILG    +G L
Subjt:  MNACRSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL

A0A1S3C6I2 aspartyl protease APCB1 isoform X2

1.4e-24

84.51

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Query:  RSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL
        RSVKD+K FFKPLTLQFGSRFW+VSTKLVI PENYLLI+KEGNVCLGILDGSQVHDGSTIILG    +G L
Subjt:  RSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL

A0A5D3BIS5 Aspartyl protease APCB1 isoform X2

7.3e-61

92.25

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Query:  RSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSLDIIVFSEGITLLNLQYLYSAVGFLPYFDC
        RSVKD+K FFKPLTLQFGSRFW+VSTKLVI PENYLLI+KEGNVCLGILDGSQVHDGSTIILGGIDDQG LDIIVF EGITLLNLQYLYSAVGFLPYFDC
Subjt:  RSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSLDIIVFSEGITLLNLQYLYSAVGFLPYFDC

Query:  YILRVKLSTNAYPALLLFYQMGLQLYQDD
        YILR KL TNAYPA+LLFYQMGLQLYQDD
Subjt:  YILRVKLSTNAYPALLLFYQMGLQLYQDD

A0A6J1C7K9 aspartyl protease APCB1

4.9e-25

81.08

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Query:  NACRSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL
        ++ RSVKDVK FFKPLTLQFGSRFW+VSTKL I PENYL+INKEGNVCLGILDGSQVHDGSTIILG    +G L
Subjt:  NACRSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL

SwissProt top hits

e value

%identity

Alignment

A2ZC67 Aspartic proteinase Asp1

5.3e-08

46.27

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Query:  RSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHD--GSTIILGGI
        R++ +VK  F+ L+L+F          L IPPE+YL+I++EG+VCLGILDGS+ H     T ++GGI
Subjt:  RSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHD--GSTIILGGI

Q0IU52 Aspartic proteinase Asp1

3.4e-07

45.45

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Query:  SVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVH--DGSTIILGGI
        ++ +VK  F+ L+L+F          L IPPE+YL+I++EG+VCLGILDGS+ H     T ++GGI
Subjt:  SVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVH--DGSTIILGGI

Q9M9A8 Aspartyl protease APCB1

4.6e-20

64.29

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Query:  SVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL
        S+ DVK FF+P+TLQ GS++ ++S KL+I PE+YL+I+ +GNVCLGILDGS VHDGSTIILG I  +G L
Subjt:  SVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL

Arabidopsis top hits

e value

%identity

Alignment

AT1G44130.1 Eukaryotic aspartyl protease family protein

7.5e-10

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Query:  RSVKDVKPFFKPLTLQF--GSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSLDI
        +SV +VK FFK +T+ F  G R    +T+L + PE YL+++K GNVCLG+L+GS+V   ++ ++G I  QG + I
Subjt:  RSVKDVKPFFKPLTLQF--GSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSLDI

AT1G49050.1 Eukaryotic aspartyl protease family protein

3.3e-21

64.29

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Query:  SVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL
        S+ DVK FF+P+TLQ GS++ ++S KL+I PE+YL+I+ +GNVCLGILDGS VHDGSTIILG I  +G L
Subjt:  SVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL

AT1G49050.2 Eukaryotic aspartyl protease family protein

3.3e-21

64.29

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Query:  SVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL
        S+ DVK FF+P+TLQ GS++ ++S KL+I PE+YL+I+ +GNVCLGILDGS VHDGSTIILG I  +G L
Subjt:  SVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSL

AT4G33490.1 Eukaryotic aspartyl protease family protein

3.4e-10

46.03

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Query:  SVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGG
        S+++VK +FKPL L F +  W   T   IPPE YL+I+ +GNVCLGIL+G+++   +  ++GG
Subjt:  SVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGG

AT4G33490.2 Eukaryotic aspartyl protease family protein

3.4e-10

43.06

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Query:  SVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSLDI
        S+++VK +FKPL L F +  W   T   IPPE YL+I+ +GNVCLGIL+G+++   +  ++G I  Q  + I
Subjt:  SVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSLDI

Sequences

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CDS sequence

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mRNA sequence

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ATGAACGCCTGCAGATCTGTTAAAGATGTCAAACCGTTCTTCAAGCCTCTAACCCTTCAGTTCGGGAGCAGATTTTGGGTTGTGTCCACGAAACTTGTGATTCCTCCAGA
GAATTATTTATTGATTAATAAAGAAGGAAATGTATGCTTGGGAATTCTTGATGGAAGCCAGGTACATGATGGGTCCACAATCATTCTTGGAGGCATTGATGATCAAGGGT
CCTTGGATATCATTGTTTTCAGTGAAGGTATCACACTCTTGAATCTCCAATATCTCTACTCTGCGGTTGGTTTTCTTCCTTATTTTGATTGCTATATCCTGAGGGTTAAA
CTTTCCACAAACGCTTACCCTGCACTGCTTTTGTTCTATCAAATGGGTCTCCAACTCTATCAAGATGACAAGGACTTGCATGTCAAAAGTTACTAAGTAGAATCAATTGA
ACAGTCTAAGTCTAGTTCAGAACAAAAGGAGAGAGATAGAGAGATAGGAAATTGTTTAATCTGACTTCCACAACGTGGTTGTACTCTTCCAAATTCTAACGAGTGTTTTA
AATAGCTCTCCCAGGCGCGTGCCTAGGCTCAAGGTACAGACCTACTGCCTCGCCTTAAAAAGGCGAGACTTACAAAATAAGGCGCACACCTTTTGTGAAGCTCTAAAGCT
CAAAGCCCTGGGCCTTAGGGCTTTTTCATTATATCTAAAA

Protein sequence

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MNACRSVKDVKPFFKPLTLQFGSRFWVVSTKLVIPPENYLLINKEGNVCLGILDGSQVHDGSTIILGGIDDQGSLDIIVFSEGITLLNLQYLYSAVGFLPYFDCYILRVK
LSTNAYPALLLFYQMGLQLYQDDKDLHVKSY

Lsi02G001730 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome