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Lsi02G002100 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G002100
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr02:1741532..1741756
RNA-Seq ExpressionLsi02G002100
SyntenyLsi02G002100
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652552.1 hypothetical protein Csa_013579 [Cucumis sativus]5.2e-2886.49Show/hide
Query:  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCGA
        MARLMREI S+NGSFG AGG+ Y LFW ALFTLCIIST+IFSCSDGMSK+RNST DVELYGGGCAAGCGAGCGA
Subjt:  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCGA

KAF3438595.1 hypothetical protein FNV43_RR21358 [Rhamnella rubrinervis]6.5e-1562.86Show/hide
Query:  MREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCGA
        M  + S +GS  +AG  +YL  W AL ++CI+S +IFSC+DG+SKE+ STAD ELYGGGCAAGCGAGCGA
Subjt:  MREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCGA

KAG6572949.1 hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sororia]4.0e-2080Show/hide
Query:  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGA
        MARL+ EIGS +GSFG + GDI  LF AALFTLCIIS + FSCSDG+SKERNSTADVELYGGGCAAGCGA
Subjt:  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGA

KAG6584341.1 hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sororia]5.7e-2789.33Show/hide
Query:  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMS-KERNSTADVELYGGGCAAGCGAGCGA
        MARLMRE GS+NGSFG A GDIYLLFWAALFTLCIIST+IFSCSDGMS K+RNSTADVELYG GCAAGCGAGCGA
Subjt:  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMS-KERNSTADVELYGGGCAAGCGAGCGA

XP_015882794.1 uncharacterized protein LOC107418606 [Ziziphus jujuba]1.3e-1563.51Show/hide
Query:  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCGA
        M RL R++ S +GS G AG   +++ W AL  +CIIS +IFSC+DG+SKE+ STAD ELYGGGCAAGCGAGCGA
Subjt:  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCGA

TrEMBL top hitse value%identityAlignment
A0A0A0LQU7 Uncharacterized protein2.5e-2886.49Show/hide
Query:  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCGA
        MARLMREI S+NGSFG AGG+ Y LFW ALFTLCIIST+IFSCSDGMSK+RNST DVELYGGGCAAGCGAGCGA
Subjt:  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCGA

A0A2P5AQX4 Uncharacterized protein9.2e-1559.46Show/hide
Query:  MARLMREIGSENGSFGFAGGDIYLLFWAALF-TLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCG
        M RL RE    +G  G +    +L+F+  L  TLCI+ST+IFSC+DG+SKE+ S AD ELYGGGCAAGCGAGCG
Subjt:  MARLMREIGSENGSFGFAGGDIYLLFWAALF-TLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCG

A0A6P3ZT85 uncharacterized protein LOC1074186066.4e-1663.51Show/hide
Query:  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCGA
        M RL R++ S +GS G AG   +++ W AL  +CIIS +IFSC+DG+SKE+ STAD ELYGGGCAAGCGAGCGA
Subjt:  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCGA

A0A803R004 Uncharacterized protein2.4e-1558.11Show/hide
Query:  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCGA
        M RL RE+ + +G  G   G   +     L TLCI+ST+IFSC+DG+SKE+ S  D ELYGGGCAAGCGAGCGA
Subjt:  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCGA

A0A803R005 Uncharacterized protein2.4e-1558.11Show/hide
Query:  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCGA
        M RL RE+ + +G  G   G   +     L TLCI+ST+IFSC+DG+SKE+ S  D ELYGGGCAAGCGAGCGA
Subjt:  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCGA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G68238.1 unknown protein1.2e-0646.3Show/hide
Query:  GDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCG
        G++ L  WAA+    +I+ VIFSCSD  SK   +    ++ G  CAAGCG GCG
Subjt:  GDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCG

AT3G18250.1 Putative membrane lipoprotein5.0e-0541.38Show/hide
Query:  FAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGC-AAGCGAGCG
        F    ++ + + A+   CI+S ++FSC+DG+S  R +T+     GGGC  AGCG GCG
Subjt:  FAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGC-AAGCGAGCG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGACTAATGAGAGAAATTGGCAGTGAAAATGGAAGTTTTGGCTTCGCCGGCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTC
CACCGTAATTTTCTCTTGCTCCGACGGCATGTCAAAAGAGAGGAATTCCACGGCTGATGTTGAGCTTTACGGCGGTGGTTGTGCCGCCGGGTGCGGCGCTGGATGTGGTG
CTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAGACTAATGAGAGAAATTGGCAGTGAAAATGGAAGTTTTGGCTTCGCCGGCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTC
CACCGTAATTTTCTCTTGCTCCGACGGCATGTCAAAAGAGAGGAATTCCACGGCTGATGTTGAGCTTTACGGCGGTGGTTGTGCCGCCGGGTGCGGCGCTGGATGTGGTG
CTTGA
Protein sequenceShow/hide protein sequence
MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCGA