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Lsi02G002110 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G002110
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibosomal protein S24/S35, mitochondrial
Genome locationchr02:1746423..1754366
RNA-Seq ExpressionLsi02G002110
SyntenyLsi02G002110
Gene Ontology termsGO:0005763 - mitochondrial small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7019929.1 hypothetical protein SDJN02_18896, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-4876.55Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSV---LTLRCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYEGDVESLPTIFEAIL
        MKRAIWGAVF  CSR +S+SP LQ  RSGPLL  FSV      RCYSSG++KYNGLNSTT ENKDSLV+DD+S EELK +I++FYEGD+ESLP IFEAIL
Subjt:  MKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSV---LTLRCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYEGDVESLPTIFEAIL

Query:  KRKLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLS-ELNE
        KRKLSGKH D DDELMKEIRQRMP +VED KDEEYDSDLS ELNE
Subjt:  KRKLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLS-ELNE

XP_008461340.1 PREDICTED: uncharacterized protein LOC103499929 [Cucumis melo]3.6e-4979.14Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSVLTLRCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYE-GDVESLPTIFEAILKR
        MKRA+WGAVFNVCSRTLSVSPPL+ FRS PLLS FSV TLRCYSSG++KYN LNST  +NKDSLV+DDVSTEELK +I+KFYE GD +SLP IFEAILKR
Subjt:  MKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSVLTLRCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYE-GDVESLPTIFEAILKR

Query:  KLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLSE
        KLSGKHED DDELMKEIRQRMP ++ED K EEYDS+L++
Subjt:  KLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLSE

XP_022924024.1 uncharacterized protein LOC111431572 [Cucurbita moschata]6.1e-4977.93Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSV---LTLRCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYEGDVESLPTIFEAIL
        MKRAIWGAVF  CSR +S+SP LQ  RSGPLL  FSV      RCYSSG++KYNGLNSTT ENKDSLV+DDVS EELK +I++FYEGDVESLPTIFEAIL
Subjt:  MKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSV---LTLRCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYEGDVESLPTIFEAIL

Query:  KRKLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLS-ELNE
        KRKLSGKH D DDELMKEIRQR+P +VED KDEEYDSDLS ELNE
Subjt:  KRKLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLS-ELNE

XP_023519890.1 uncharacterized protein LOC111783221 [Cucurbita pepo subsp. pepo]1.6e-4978.62Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSVLTL---RCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYEGDVESLPTIFEAIL
        MKRAIWGAVF VCSR +S+SP LQ  RSGPLL  FSV      RCYS+G++KYNGLNSTT ENKDSLV+DDVS EELK +I++FYEGDVESLPTIFEAIL
Subjt:  MKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSVLTL---RCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYEGDVESLPTIFEAIL

Query:  KRKLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLS-ELNE
        KRKLSGKH D DDELMKEIRQRMP +VED KDEEYDSDLS ELNE
Subjt:  KRKLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLS-ELNE

XP_038894045.1 uncharacterized protein LOC120082798 [Benincasa hispida]3.8e-5182.27Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSVLTLRCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYEGDVESLPTIFEAILKRK
        MKRA+ GAVFNV SRTLSVSPPL+ FRSG LLS FS  +LR YSSG++KYNGLNST  +NKDSL+EDDVSTEELK +I+KFYEGDVESLPTIFEAILKRK
Subjt:  MKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSVLTLRCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYEGDVESLPTIFEAILKRK

Query:  LSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLSELNE
        LSGKHEDDD E+MKEIRQRMP QVEDS  EEYDSDLSELNE
Subjt:  LSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLSELNE

TrEMBL top hitse value%identityAlignment
A0A0A0LT17 Uncharacterized protein6.4e-4475.71Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSVLTLRCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYE-GDVESLPTIFEAILKR
        MKRA+WGAVF+V S TLSVSPPL+ FRS PLLS FSV TLR YSSG++KYN LNST  +NKDSLV+DDVSTEELK +I+KFYE GD +SLP IFEAILKR
Subjt:  MKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSVLTLRCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYE-GDVESLPTIFEAILKR

Query:  KLSGKHEDDDDELMKEIRQRMPEQVEDSK-DEEYDSDLSE
        KLSGKHED DDELMKEIRQ++P +VED K +EEYDSDL +
Subjt:  KLSGKHEDDDDELMKEIRQRMPEQVEDSK-DEEYDSDLSE

A0A1S3CEX3 uncharacterized protein LOC1034999291.7e-4979.14Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSVLTLRCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYE-GDVESLPTIFEAILKR
        MKRA+WGAVFNVCSRTLSVSPPL+ FRS PLLS FSV TLRCYSSG++KYN LNST  +NKDSLV+DDVSTEELK +I+KFYE GD +SLP IFEAILKR
Subjt:  MKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSVLTLRCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYE-GDVESLPTIFEAILKR

Query:  KLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLSE
        KLSGKHED DDELMKEIRQRMP ++ED K EEYDS+L++
Subjt:  KLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLSE

A0A5D3BIA4 Uncharacterized protein1.7e-4979.14Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSVLTLRCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYE-GDVESLPTIFEAILKR
        MKRA+WGAVFNVCSRTLSVSPPL+ FRS PLLS FSV TLRCYSSG++KYN LNST  +NKDSLV+DDVSTEELK +I+KFYE GD +SLP IFEAILKR
Subjt:  MKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSVLTLRCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYE-GDVESLPTIFEAILKR

Query:  KLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLSE
        KLSGKHED DDELMKEIRQRMP ++ED K EEYDS+L++
Subjt:  KLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLSE

A0A6J1E804 uncharacterized protein LOC1114315723.0e-4977.93Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSV---LTLRCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYEGDVESLPTIFEAIL
        MKRAIWGAVF  CSR +S+SP LQ  RSGPLL  FSV      RCYSSG++KYNGLNSTT ENKDSLV+DDVS EELK +I++FYEGDVESLPTIFEAIL
Subjt:  MKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSV---LTLRCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYEGDVESLPTIFEAIL

Query:  KRKLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLS-ELNE
        KRKLSGKH D DDELMKEIRQR+P +VED KDEEYDSDLS ELNE
Subjt:  KRKLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLS-ELNE

A0A6J1KP40 uncharacterized protein LOC1114952361.4e-4675.86Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSV---LTLRCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYEGDVESLPTIFEAIL
        MKRAIWGAVF  CSR +S+ P LQ  RSGPLL  FSV      RCYSSG++KYNGLNSTT ENKDSLV+D VS EELK +I++FYEGDVESLPTIFEAIL
Subjt:  MKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSV---LTLRCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYEGDVESLPTIFEAIL

Query:  KRKLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLS-ELNE
        KRKLSGKH D DDELMKEI QRMP +VED KDEEYDSDLS +LNE
Subjt:  KRKLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLS-ELNE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G73770.1 FUNCTIONS IN: molecular_function unknown6.2e-0740Show/hide
Query:  NSTTNENKDSLVEDDVSTEELKSRINKFY-EGDVESLPTIFEAILKRKLSGKHEDDDDELMKEIRQRMPEQVEDS-KDEEYDSDL
        +S ++ ++    E+ +S EELK RI  F  +G+ +++P +FEA++ RKLSGKH+D DDE+M  +R+     V D+ K ++ DSD+
Subjt:  NSTTNENKDSLVEDDVSTEELKSRINKFY-EGDVESLPTIFEAILKRKLSGKHEDDDDELMKEIRQRMPEQVEDS-KDEEYDSDL

AT1G73770.2 FUNCTIONS IN: molecular_function unknown6.2e-0740Show/hide
Query:  NSTTNENKDSLVEDDVSTEELKSRINKFY-EGDVESLPTIFEAILKRKLSGKHEDDDDELMKEIRQRMPEQVEDS-KDEEYDSDL
        +S ++ ++    E+ +S EELK RI  F  +G+ +++P +FEA++ RKLSGKH+D DDE+M  +R+     V D+ K ++ DSD+
Subjt:  NSTTNENKDSLVEDDVSTEELKSRINKFY-EGDVESLPTIFEAILKRKLSGKHEDDDDELMKEIRQRMPEQVEDS-KDEEYDSDL

AT3G18240.1 Ribosomal protein S24/S35, mitochondrial1.9e-1138.03Show/hide
Query:  NVCSRTLSVSPPL--QIFRSGPLLSRFSVLT---LRCYSSGSNKYNGLNSTT--------NENKDSLVEDDVSTEELKSRINKFY-EGDVESLPTIFEAI
        ++C+R + +SP +  QI  + P L+  +       R +SS S    G NSTT        +  K  LV +DVS +ELKSRI K++ EG+ ++LP + EA+
Subjt:  NVCSRTLSVSPPL--QIFRSGPLLSRFSVLT---LRCYSSGSNKYNGLNSTT--------NENKDSLVEDDVSTEELKSRINKFY-EGDVESLPTIFEAI

Query:  LKRKLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLSE
        L+R+L  KH + DDEL+++I + +P + +D KDE+++SD  E
Subjt:  LKRKLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLSE

AT3G18240.2 Ribosomal protein S24/S35, mitochondrial1.9e-1138.03Show/hide
Query:  NVCSRTLSVSPPL--QIFRSGPLLSRFSVLT---LRCYSSGSNKYNGLNSTT--------NENKDSLVEDDVSTEELKSRINKFY-EGDVESLPTIFEAI
        ++C+R + +SP +  QI  + P L+  +       R +SS S    G NSTT        +  K  LV +DVS +ELKSRI K++ EG+ ++LP + EA+
Subjt:  NVCSRTLSVSPPL--QIFRSGPLLSRFSVLT---LRCYSSGSNKYNGLNSTT--------NENKDSLVEDDVSTEELKSRINKFY-EGDVESLPTIFEAI

Query:  LKRKLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLSE
        L+R+L  KH + DDEL+++I + +P + +D KDE+++SD  E
Subjt:  LKRKLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLSE

AT4G21460.1 Ribosomal protein S24/S35, mitochondrial1.2e-1045.36Show/hide
Query:  SGSNKYNGLNS--TTNENKDSLVEDDVSTEELKSRINK-FYEGDVESLPTIFEAILKRKLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLSE
        SG N      S  T + +K  LV +DVS +ELKSRI+K F EG+ ++LP + EA+L+R+L  KH + DDELM++I + +P + +D KDE+++SD  E
Subjt:  SGSNKYNGLNS--TTNENKDSLVEDDVSTEELKSRINK-FYEGDVESLPTIFEAILKRKLSGKHEDDDDELMKEIRQRMPEQVEDSKDEEYDSDLSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATAAGCGCCATGAAACGAGCTATATGGGGAGCTGTCTTCAATGTCTGTTCTCGGACGCTTTCCGTCTCTCCGCCGCTACAAATCTTTCGTTCTGGTCCCTTACT
GTCACGATTTTCCGTTTTGACTTTGCGATGTTACTCATCCGGGAGTAACAAGTACAATGGATTGAACTCAACTACGAATGAAAACAAGGATTCTCTCGTCGAAGATGATG
TCAGTACCGAAGAGCTGAAGAGTAGAATTAATAAATTTTATGAGGGTGATGTCGAGTCATTACCAACAATTTTTGAAGCAATTTTGAAAAGGAAGCTATCGGGTAAACAC
GAAGATGATGACGATGAGCTGATGAAAGAAATTCGACAGCGAATGCCTGAACAAGTTGAAGATTCTAAAGATGAAGAATATGATTCAGATTTAAGTGAGTTGAATGAATG
A
mRNA sequenceShow/hide mRNA sequence
ATGGAGATAAGCGCCATGAAACGAGCTATATGGGGAGCTGTCTTCAATGTCTGTTCTCGGACGCTTTCCGTCTCTCCGCCGCTACAAATCTTTCGTTCTGGTCCCTTACT
GTCACGATTTTCCGTTTTGACTTTGCGATGTTACTCATCCGGGAGTAACAAGTACAATGGATTGAACTCAACTACGAATGAAAACAAGGATTCTCTCGTCGAAGATGATG
TCAGTACCGAAGAGCTGAAGAGTAGAATTAATAAATTTTATGAGGGTGATGTCGAGTCATTACCAACAATTTTTGAAGCAATTTTGAAAAGGAAGCTATCGGGTAAACAC
GAAGATGATGACGATGAGCTGATGAAAGAAATTCGACAGCGAATGCCTGAACAAGTTGAAGATTCTAAAGATGAAGAATATGATTCAGATTTAAGTGAGTTGAATGAATG
AAACTGATGAAGAAATGGAGGATTCCAGTGATGCCAGTGATTCTGAGGAAGAGGATAGAAAATTATAAGTTATGTTGATAACGTGAGTTCAATAGTTCATACTCGTTGGA
CGTTAGATTTTACATTTTTAGTGAAGATTTTCAACTTTTAATATCTTATTTAGTTTGAAAATCTTTGGTTCATTTTAACTCAGAGGAACATATCAGATGATCATGGTTGG
TCTAGGCACTTGAACCCCTAACTCGGGGAACTTTGTTACATGGAAAATTCTATGCTATATGTCTTTTAAATGCTAATATTTGCATTAATAACATTACCATGGCCAGAGGT
TGGGGGTGAAAATTC
Protein sequenceShow/hide protein sequence
MEISAMKRAIWGAVFNVCSRTLSVSPPLQIFRSGPLLSRFSVLTLRCYSSGSNKYNGLNSTTNENKDSLVEDDVSTEELKSRINKFYEGDVESLPTIFEAILKRKLSGKH
EDDDDELMKEIRQRMPEQVEDSKDEEYDSDLSELNE