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Lsi02G002250 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G002250
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSecE/sec61-gamma protein transport protein
Genome locationchr02:1879035..1881843
RNA-Seq ExpressionLsi02G002250
SyntenyLsi02G002250
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER28592.1 neuraminidase [Striga asiatica]2.9e-0544.59Show/hide
Query:  MTMIIRPNSDRRPPSRRHRHRVSFRRIHQIVLRRISTRVEIPKSPAHNEEIVPMNMNRMILHIQKIRALKHDFQ
        +T IIR   DR PP RRH +R+   R+ QI   R+  RVEIP+   H+EEI P+ M  M L     R L++D Q
Subjt:  MTMIIRPNSDRRPPSRRHRHRVSFRRIHQIVLRRISTRVEIPKSPAHNEEIVPMNMNRMILHIQKIRALKHDFQ

GER37623.1 secE/sec61-gamma protein transport protein [Striga asiatica]9.4e-0438.36Show/hide
Query:  MIIRPNSDRRPPSRRHRHRVSFRRIHQIVLRRISTRVEIPKSPAHNEEIVPMNMNRMILHIQKIRALKHDFQI
        +I+ PN  R PP  RH +RV   R+H+I++ R+  RVE+P+ P   EE  P+ ++R++    + RALKH   +
Subjt:  MIIRPNSDRRPPSRRHRHRVSFRRIHQIVLRRISTRVEIPKSPAHNEEIVPMNMNRMILHIQKIRALKHDFQI

KAG7012142.1 hypothetical protein SDJN02_24894, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-2538.19Show/hide
Query:  IIRPNSDRRPPSRRHRHRVSFRRIHQIVLRRISTRVEIPKSPAHNEEIVPMNMNRMILHIQKIRALKHDFQICSIWNRQKLSPKFRVHE-----------
        I+RP+SD RP S RHR+ VS RRI +I+LRRI   +EIPKS A +EEIVPM+MN MILHIQK   LKHDFQIC + N Q  S KF VH            
Subjt:  IIRPNSDRRPPSRRHRHRVSFRRIHQIVLRRISTRVEIPKSPAHNEEIVPMNMNRMILHIQKIRALKHDFQICSIWNRQKLSPKFRVHE-----------

Query:  -----------------------HYMDTEENQGYGV-----CLKMQWQRLYP----------SYQGGF-------------QKSGGLARSYHNGCGIEGF
                                Y  +  N+G  V      L +Q    +P          SY   F              K+    +   +   I  F
Subjt:  -----------------------HYMDTEENQGYGV-----CLKMQWQRLYP----------SYQGGF-------------QKSGGLARSYHNGCGIEGF

Query:  C-VCSINLHQCQCMVGYGKEKFIVECSINYSQQ---------LTLNRKRRVTGE
          V SIN H CQC++GYG+EKFIVEC I+ SQQ          T +R+ R+T E
Subjt:  C-VCSINLHQCQCMVGYGKEKFIVECSINYSQQ---------LTLNRKRRVTGE

TrEMBL top hitse value%identityAlignment
A0A5A7P7A4 Neuraminidase1.4e-0544.59Show/hide
Query:  MTMIIRPNSDRRPPSRRHRHRVSFRRIHQIVLRRISTRVEIPKSPAHNEEIVPMNMNRMILHIQKIRALKHDFQ
        +T IIR   DR PP RRH +R+   R+ QI   R+  RVEIP+   H+EEI P+ M  M L     R L++D Q
Subjt:  MTMIIRPNSDRRPPSRRHRHRVSFRRIHQIVLRRISTRVEIPKSPAHNEEIVPMNMNRMILHIQKIRALKHDFQ

A0A5A7PXL8 SecE/sec61-gamma protein transport protein4.5e-0438.36Show/hide
Query:  MIIRPNSDRRPPSRRHRHRVSFRRIHQIVLRRISTRVEIPKSPAHNEEIVPMNMNRMILHIQKIRALKHDFQI
        +I+ PN  R PP  RH +RV   R+H+I++ R+  RVE+P+ P   EE  P+ ++R++    + RALKH   +
Subjt:  MIIRPNSDRRPPSRRHRHRVSFRRIHQIVLRRISTRVEIPKSPAHNEEIVPMNMNRMILHIQKIRALKHDFQI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAATGATTATCCGCCCTAATTCTGATCGCCGCCCACCCTCCCGTCGGCACCGCCACCGTGTTTCTTTCCGGCGGATCCACCAGATTGTACTTCGCCGGATCTCTAC
CCGCGTCGAAATTCCCAAATCCCCTGCCCACAACGAAGAAATTGTGCCCATGAACATGAATCGGATGATTCTCCACATTCAGAAAATTCGTGCCCTGAAACACGATTTCC
AGATCTGTTCCATATGGAACCGCCAAAAGCTTAGTCCCAAATTCCGTGTTCATGAACATTACATGGATACAGAGGAGAATCAAGGCTATGGAGTTTGTTTGAAAATGCAG
TGGCAAAGGCTGTATCCTTCATATCAGGGAGGTTTTCAGAAGAGTGGTGGTTTGGCCAGGAGCTATCATAATGGCTGTGGTATTGAAGGGTTTTGTGTATGCAGCATCAA
TCTCCACCAGTGTCAATGTATGGTTGGCTATGGCAAAGAAAAGTTCATTGTTGAGTGCTCCATTAATTACTCTCAGCAGCTTACATTAAACCGAAAGCGTCGAGTGACAG
GAGAAGCAAAGCTGAATGGCACAAAACCAGCAAGGAGGATGCTTATGAATATGACAAGCAATAGCATCATCCCACACTGCTGGCTGAGGCTCTTCATTGTCATCAAATTT
TTTAACTCTTCAAAACCAGTTAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAATGATTATCCGCCCTAATTCTGATCGCCGCCCACCCTCCCGTCGGCACCGCCACCGTGTTTCTTTCCGGCGGATCCACCAGATTGTACTTCGCCGGATCTCTAC
CCGCGTCGAAATTCCCAAATCCCCTGCCCACAACGAAGAAATTGTGCCCATGAACATGAATCGGATGATTCTCCACATTCAGAAAATTCGTGCCCTGAAACACGATTTCC
AGATCTGTTCCATATGGAACCGCCAAAAGCTTAGTCCCAAATTCCGTGTTCATGAACATTACATGGATACAGAGGAGAATCAAGGCTATGGAGTTTGTTTGAAAATGCAG
TGGCAAAGGCTGTATCCTTCATATCAGGGAGGTTTTCAGAAGAGTGGTGGTTTGGCCAGGAGCTATCATAATGGCTGTGGTATTGAAGGGTTTTGTGTATGCAGCATCAA
TCTCCACCAGTGTCAATGTATGGTTGGCTATGGCAAAGAAAAGTTCATTGTTGAGTGCTCCATTAATTACTCTCAGCAGCTTACATTAAACCGAAAGCGTCGAGTGACAG
GAGAAGCAAAGCTGAATGGCACAAAACCAGCAAGGAGGATGCTTATGAATATGACAAGCAATAGCATCATCCCACACTGCTGGCTGAGGCTCTTCATTGTCATCAAATTT
TTTAACTCTTCAAAACCAGTTAGCTAACAATTTATATATATACTACAAAAAGCTGCACTATTTTTCTTATAGTTTTTTGCTCACTTTGAACTCACATTCTGCAGTCATTG
GCACAGTCTGTGAATCCTTTTGATGTGGTGAGTGGTGCTTTGTTGTGGGGGGTTGGTGTGTAAGTGGGGTTAATTGCTGAGATCAATATGTGGGTAATGTCAATTGGTTG
TTTTTTAAATTAATGATAAACAGATTAGGTGTTTGGCTGCTGCATTATAC
Protein sequenceShow/hide protein sequence
MTMIIRPNSDRRPPSRRHRHRVSFRRIHQIVLRRISTRVEIPKSPAHNEEIVPMNMNRMILHIQKIRALKHDFQICSIWNRQKLSPKFRVHEHYMDTEENQGYGVCLKMQ
WQRLYPSYQGGFQKSGGLARSYHNGCGIEGFCVCSINLHQCQCMVGYGKEKFIVECSINYSQQLTLNRKRRVTGEAKLNGTKPARRMLMNMTSNSIIPHCWLRLFIVIKF
FNSSKPVS