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Lsi02G002350 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G002350
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNA-directed DNA polymerase (reverse transcriptase)-related family protein
Genome locationchr02:2014126..2016720
RNA-Seq ExpressionLsi02G002350
SyntenyLsi02G002350
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2304961.1 hypothetical protein Bca52824_033612 [Brassica carinata]1.1e-1641.27Show/hide
Query:  GLYLDLLSSFSKMKMEICSQLEGSL-----------FSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLNLCKS
        G YL L   FS  K+E+ + ++  +            S  GK+V+LKSV   + +Y + CF   K    +++ AM+SF W  S +K+KIHWL+W  LC  
Subjt:  GLYLDLLSSFSKMKMEICSQLEGSL-----------FSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLNLCKS

Query:  KYLGGLNFKDNELFNQALLEKQVGNI
        K+LGG+ FKD E FNQALL KQ   I
Subjt:  KYLGGLNFKDNELFNQALLEKQVGNI

XP_013646207.1 uncharacterized protein LOC106350924 [Brassica napus]1.4e-1642.06Show/hide
Query:  GLYLDLLSSFSKMKMEICSQLEGSL-----------FSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLNLCKS
        G YL L   FS  K+E+ + ++  +            S  GKDV+LKSV   + +Y + CF   K    ++  AM++F W  S  K KIHWL+W  LC S
Subjt:  GLYLDLLSSFSKMKMEICSQLEGSL-----------FSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLNLCKS

Query:  KYLGGLNFKDNELFNQALLEKQVGNI
        K +GG+ FKD ELFNQALL KQ   I
Subjt:  KYLGGLNFKDNELFNQALLEKQVGNI

XP_013673759.1 uncharacterized protein LOC106378122 [Brassica napus]1.4e-1642.06Show/hide
Query:  GLYLDLLSSFSKMKMEICSQLEGSL-----------FSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLNLCKS
        G YL L   FS  K+E+ + ++  +            S  GKDV+LKSV   + +Y + CF   K    ++  AM++F W  S  K KIHWL+W  LC S
Subjt:  GLYLDLLSSFSKMKMEICSQLEGSL-----------FSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLNLCKS

Query:  KYLGGLNFKDNELFNQALLEKQVGNI
        K +GG+ FKD ELFNQALL KQ   I
Subjt:  KYLGGLNFKDNELFNQALLEKQVGNI

XP_013738713.1 uncharacterized protein LOC106441439 [Brassica napus]1.4e-1642.06Show/hide
Query:  GLYLDLLSSFSKMKMEICSQLEGSL-----------FSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLNLCKS
        G YL L   FS  K+E+ + ++  +            S  GKDV+LKSV   + +Y + CF   K    ++  AM++F W  S  K KIHWL+W  LC S
Subjt:  GLYLDLLSSFSKMKMEICSQLEGSL-----------FSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLNLCKS

Query:  KYLGGLNFKDNELFNQALLEKQVGNI
        K +GG+ FKD ELFNQALL KQ   I
Subjt:  KYLGGLNFKDNELFNQALLEKQVGNI

XP_030495126.1 uncharacterized protein LOC115710915 [Cannabis sativa]1.5e-1841.67Show/hide
Query:  IFSVSLVDKLGLYLDLLSSFSKMKMEICSQL-----------EGSLFSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIH
        +  V LVD    YL + +S  K K E+   +           + SLFS  G+++LLK+++Q I  Y++ CF   K++  DI   M+ F WG S +K+KIH
Subjt:  IFSVSLVDKLGLYLDLLSSFSKMKMEICSQL-----------EGSLFSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIH

Query:  WLNWLNLCKSKYLGGLNFKDNELFNQALLEKQ
        W NW  LCK K  GG+ FK+ ELFNQ+LL KQ
Subjt:  WLNWLNLCKSKYLGGLNFKDNELFNQALLEKQ

TrEMBL top hitse value%identityAlignment
A0A803NGK5 Uncharacterized protein2.7e-1842.64Show/hide
Query:  VSLVDKLGLYLDLLSSFSKMKMEICSQL-----------EGSLFSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLN
        V+LV+    YL + +S  K K E+   +           + SLFS  G+++LL +++Q I  YV+ CF   K++  DI + M+ F WG S SK KIHW  
Subjt:  VSLVDKLGLYLDLLSSFSKMKMEICSQL-----------EGSLFSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLN

Query:  WLNLCKSKYLGGLNFKDNELFNQALLEKQ
        W  LCK K  GG+ FKD E FNQALL KQ
Subjt:  WLNLCKSKYLGGLNFKDNELFNQALLEKQ

A0A803NGM9 Uncharacterized protein1.6e-1844.09Show/hide
Query:  VDKLGLYLDLLSSFSKMKMEICSQL-----------EGSLFSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLN
        V+  G YL L S   + K E   Q+           + S+FS+ GK+VL+K+VVQ I  Y + CF   K+  + I R  + F WG S  + KIHW  W +
Subjt:  VDKLGLYLDLLSSFSKMKMEICSQL-----------EGSLFSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLN

Query:  LCKSKYLGGLNFKDNELFNQALLEKQV
        LCKSK  GGL F+D  LFNQALL KQV
Subjt:  LCKSKYLGGLNFKDNELFNQALLEKQV

A0A803PAN7 Uncharacterized protein1.2e-1850.48Show/hide
Query:  FSKMKMEICSQLEG---SLFSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLNLCKSKYLGGLNFKDNELFNQA
        F  ++ +I  QL+G   SLFS  G++VLLK+V+Q I  YV+ CF   K++  DI   M+ F WG S SK KIHW  W  LCK K  GG+ FKD E FNQ+
Subjt:  FSKMKMEICSQLEG---SLFSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLNLCKSKYLGGLNFKDNELFNQA

Query:  LLEKQ
        LL KQ
Subjt:  LLEKQ

A0A803PYI0 Uncharacterized protein2.1e-1841.35Show/hide
Query:  IFSVSLVDKLGLYLDLLSSFSKMKMEICSQL-----------EGSLFSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIH
        +  V  VD  G YL L SS  + K E   ++           + S+FS+ GK+VL+KS+VQ I  Y + CF   K+  + + R  S F WG S  +KKIH
Subjt:  IFSVSLVDKLGLYLDLLSSFSKMKMEICSQL-----------EGSLFSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIH

Query:  WLNWLNLCKSKYLGGLNFKDNELFNQALLEKQV
        W  W  LC+ K  GGL F+D  +FNQALL KQ+
Subjt:  WLNWLNLCKSKYLGGLNFKDNELFNQALLEKQV

A0A803Q9W0 Uncharacterized protein9.4e-1940.88Show/hide
Query:  LLRNKIFSVSLVDKLGLYLDLLSSFSKMKMEICSQL-----------EGSLFSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSS
        +L   I  V LVD    YL + +S  K K E+   +           + SLFS  G+++LLK+++Q I  Y++ CF   K++  DI   M+ F WG S +
Subjt:  LLRNKIFSVSLVDKLGLYLDLLSSFSKMKMEICSQL-----------EGSLFSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSS

Query:  KKKIHWLNWLNLCKSKYLGGLNFKDNELFNQALLEKQ
        K+K HW NW  LCK K  GG+ FK+ ELFNQ+LL KQ
Subjt:  KKKIHWLNWLNLCKSKYLGGLNFKDNELFNQALLEKQ

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657504.4e-0525.71Show/hide
Query:  SFSKMKMEICSQLEG---SLFSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLNLCKSKYLGGLNFKDNELFNQ
        +F ++   + S++ G      S  G+  L K+V+  + V+ +      + I   + +   +F+WG ++ KKK H + W  +C  K  GGL  +  +  N+
Subjt:  SFSKMKMEICSQLEG---SLFSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLNLCKSKYLGGLNFKDNELFNQ

Query:  ALLEK
        AL+ K
Subjt:  ALLEK

P93295 Uncharacterized mitochondrial protein AtMg003102.2e-0945.07Show/hide
Query:  IQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLNLCKSKY-LGGLNFKDNELFNQALLEKQ
        + VY + CF   K +   ++ AM+ F W    +K+KI W+ W  LCKSK   GGL F+D   FNQALL KQ
Subjt:  IQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLNLCKSKY-LGGLNFKDNELFNQALLEKQ

Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein8.2e-0736.62Show/hide
Query:  IQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLNLCKSKYLGGLNFKDNELFNQALLEKQV
        +  Y + CF   K +   I   ++ F W      K +HW  W +L   K  GG+ FKD E FN ALL KQ+
Subjt:  IQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLNLCKSKYLGGLNFKDNELFNQALLEKQV

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.6e-1045.07Show/hide
Query:  IQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLNLCKSKY-LGGLNFKDNELFNQALLEKQ
        + VY + CF   K +   ++ AM+ F W    +K+KI W+ W  LCKSK   GGL F+D   FNQALL KQ
Subjt:  IQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLNLCKSKY-LGGLNFKDNELFNQALLEKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTGTCCGAGTTTGCTTGTGTGCACCTCTCGACTATGTGATGTCCTTGTACATATGGAAATACAAGCTGGAAGAGTTCAACACAGAAGTCATTTCAGGGGCTCATA
TCTTCCAGTTAGGACATATCGTCAATCTACTACCGTCCAAACGGAAGCAGCCGTAAGTCCGGCCTTTGTTTCATCATTGCCAGTAACTTGTTACACGCAAAACGATGAGA
TCGATGATATCAAAATACGAGATGCTCAGATTTTACTAAGAAAAACGAGTGAATCGCAGAAACAAAACCCATTTCTATGGCATGGAATAGAGGAAAGAGAGAGGAGAAAT
ACCAGTGCCCTTAGTTCGCCTGGGGAAACCAAACTCGATGATAACGCCAATAAGGTTAACCTTCTGGTTTATGGAGGCAATAGCATCTCTAATCTCCATGAATTTATAGT
CGTCGCTGCTCCCCATCTCTGTGAGCCCCAAGTTTCGGACCGTGCGAGCAATTCCCTAAACCTCCACAGACCTTCCGATTATAAACACATTTCGCGCATTCTCTTCCCAT
CTCTCATTTGCTTTTTGACGACGATAATGTCTCATTTTTTAAAGCATTTACTCAGAAATAAAATCTTCAGTGTCTCATTGGTAGATAAGTTGGGTCTTTATTTAGACTTG
CTTTCAAGCTTTTCAAAAATGAAGATGGAAATATGTTCACAATTGGAAGGCTCTCTTTTTTCCATTGTTGGAAAAGATGTTTTGCTTAAAAGTGTTGTCCAAGTTATACA
AGTTTATGTTGTGGGGTGCTTTGGTTTTCATAAACAAATATACACGGATATTTCTCGAGCCATGTCAAGTTTTATGTGGGGTTGTTCGAGTTCTAAGAAGAAAATTCACT
GGTTAAATTGGCTAAATTTGTGTAAGTCAAAATACTTAGGAGGACTTAATTTCAAAGATAATGAGTTGTTCAACCAAGCCCTTCTTGAAAAACAAGTTGGGAATATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTGTCCGAGTTTGCTTGTGTGCACCTCTCGACTATGTGATGTCCTTGTACATATGGAAATACAAGCTGGAAGAGTTCAACACAGAAGTCATTTCAGGGGCTCATA
TCTTCCAGTTAGGACATATCGTCAATCTACTACCGTCCAAACGGAAGCAGCCGTAAGTCCGGCCTTTGTTTCATCATTGCCAGTAACTTGTTACACGCAAAACGATGAGA
TCGATGATATCAAAATACGAGATGCTCAGATTTTACTAAGAAAAACGAGTGAATCGCAGAAACAAAACCCATTTCTATGGCATGGAATAGAGGAAAGAGAGAGGAGAAAT
ACCAGTGCCCTTAGTTCGCCTGGGGAAACCAAACTCGATGATAACGCCAATAAGGTTAACCTTCTGGTTTATGGAGGCAATAGCATCTCTAATCTCCATGAATTTATAGT
CGTCGCTGCTCCCCATCTCTGTGAGCCCCAAGTTTCGGACCGTGCGAGCAATTCCCTAAACCTCCACAGACCTTCCGATTATAAACACATTTCGCGCATTCTCTTCCCAT
CTCTCATTTGCTTTTTGACGACGATAATGTCTCATTTTTTAAAGCATTTACTCAGAAATAAAATCTTCAGTGTCTCATTGGTAGATAAGTTGGGTCTTTATTTAGACTTG
CTTTCAAGCTTTTCAAAAATGAAGATGGAAATATGTTCACAATTGGAAGGCTCTCTTTTTTCCATTGTTGGAAAAGATGTTTTGCTTAAAAGTGTTGTCCAAGTTATACA
AGTTTATGTTGTGGGGTGCTTTGGTTTTCATAAACAAATATACACGGATATTTCTCGAGCCATGTCAAGTTTTATGTGGGGTTGTTCGAGTTCTAAGAAGAAAATTCACT
GGTTAAATTGGCTAAATTTGTGTAAGTCAAAATACTTAGGAGGACTTAATTTCAAAGATAATGAGTTGTTCAACCAAGCCCTTCTTGAAAAACAAGTTGGGAATATTTAG
Protein sequenceShow/hide protein sequence
MSCPSLLVCTSRLCDVLVHMEIQAGRVQHRSHFRGSYLPVRTYRQSTTVQTEAAVSPAFVSSLPVTCYTQNDEIDDIKIRDAQILLRKTSESQKQNPFLWHGIEERERRN
TSALSSPGETKLDDNANKVNLLVYGGNSISNLHEFIVVAAPHLCEPQVSDRASNSLNLHRPSDYKHISRILFPSLICFLTTIMSHFLKHLLRNKIFSVSLVDKLGLYLDL
LSSFSKMKMEICSQLEGSLFSIVGKDVLLKSVVQVIQVYVVGCFGFHKQIYTDISRAMSSFMWGCSSSKKKIHWLNWLNLCKSKYLGGLNFKDNELFNQALLEKQVGNI