; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G002390 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G002390
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDown syndrome critical region protein 3 homolog isoform X1
Genome locationchr02:2029805..2030704
RNA-Seq ExpressionLsi02G002390
SyntenyLsi02G002390
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0042147 - retrograde transport, endosome to Golgi (biological process)
GO:0048768 - root hair cell tip growth (biological process)
GO:0005829 - cytosol (cellular component)
GO:0010008 - endosome membrane (cellular component)
GO:0030904 - retromer complex (cellular component)
InterPro domainsIPR014752 - Arrestin-like, C-terminal
IPR028934 - Vacuolar protein sorting protein 26 related


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ99037.1 Down syndrome critical region protein 3-like protein isoform X1 [Cucumis melo var. makuwa]2.2e-3493.1Show/hide
Query:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV
        VELKLSRTNRIYRP EHLQGQIIVNSRSSISHSGIR+ALNGSVNLQVRGGSAGVIESVYGVIKPI+IVNRSI VRPSGKLASGT E+
Subjt:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV

XP_008464938.1 PREDICTED: Down syndrome critical region protein 3 homolog isoform X1 [Cucumis melo]2.2e-3493.1Show/hide
Query:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV
        VELKLSRTNRIYRP EHLQGQIIVNSRSSISHSGIR+ALNGSVNLQVRGGSAGVIESVYGVIKPI+IVNRSI VRPSGKLASGT E+
Subjt:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV

XP_022137704.1 Down syndrome critical region protein 3 homolog isoform X1 [Momordica charantia]3.4e-3591.01Show/hide
Query:  MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV
        MPVEL+LSRTNRIYRPSEHLQGQIIVNS SSISHSGIRLA+NGSVNLQ+RGGSAGVIESVYGVIKP  IVN+SIEVRPSGKLASGTTE+
Subjt:  MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV

XP_022137705.1 Down syndrome critical region protein 3 homolog isoform X2 [Momordica charantia]3.4e-3591.01Show/hide
Query:  MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV
        MPVEL+LSRTNRIYRPSEHLQGQIIVNS SSISHSGIRLA+NGSVNLQ+RGGSAGVIESVYGVIKP  IVN+SIEVRPSGKLASGTTE+
Subjt:  MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV

XP_038895697.1 vacuolar protein sorting-associated protein 26C isoform X1 [Benincasa hispida]1.4e-3694.38Show/hide
Query:  MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV
        MPVELKLSRTNRIYRPSEHLQG IIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPI IVNR +EVRPSGKLASGTTE+
Subjt:  MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV

TrEMBL top hitse value%identityAlignment
A0A0A0LT45 Uncharacterized protein1.8e-3494.25Show/hide
Query:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV
        VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPI IVNRSI V PSGKLASGT E+
Subjt:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV

A0A1S3CMM2 Down syndrome critical region protein 3 homolog isoform X11.1e-3493.1Show/hide
Query:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV
        VELKLSRTNRIYRP EHLQGQIIVNSRSSISHSGIR+ALNGSVNLQVRGGSAGVIESVYGVIKPI+IVNRSI VRPSGKLASGT E+
Subjt:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV

A0A5D3BIU2 Down syndrome critical region protein 3-like protein isoform X11.1e-3493.1Show/hide
Query:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV
        VELKLSRTNRIYRP EHLQGQIIVNSRSSISHSGIR+ALNGSVNLQVRGGSAGVIESVYGVIKPI+IVNRSI VRPSGKLASGT E+
Subjt:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV

A0A6J1C7E9 Down syndrome critical region protein 3 homolog isoform X21.6e-3591.01Show/hide
Query:  MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV
        MPVEL+LSRTNRIYRPSEHLQGQIIVNS SSISHSGIRLA+NGSVNLQ+RGGSAGVIESVYGVIKP  IVN+SIEVRPSGKLASGTTE+
Subjt:  MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV

A0A6J1C810 Down syndrome critical region protein 3 homolog isoform X11.6e-3591.01Show/hide
Query:  MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV
        MPVEL+LSRTNRIYRPSEHLQGQIIVNS SSISHSGIRLA+NGSVNLQ+RGGSAGVIESVYGVIKP  IVN+SIEVRPSGKLASGTTE+
Subjt:  MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV

SwissProt top hitse value%identityAlignment
O14972 Vacuolar protein sorting-associated protein 26C6.9e-1540.23Show/hide
Query:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV
        +++K+ R N++Y   E L G ++++S+ S+ H G+ L + G+VNLQ+   S GV E+ Y  +KPI I+N +IE+   GK  SG TE+
Subjt:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV

O35075 Vacuolar protein sorting-associated protein 26C1.8e-1541.38Show/hide
Query:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV
        +++K+ R N++Y   E L G ++++S+ S+ H G+ L + G+VNLQ+   S GV E+ Y  +KPI I+N +I+V   GK+ SG TEV
Subjt:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV

Q54DI8 Vacuolar protein sorting-associated protein 26C5.5e-1236.36Show/hide
Query:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEV-RPSGKLASGTTEV
        ++LKL + ++IYRP   + G +++NS+  +SHSG+ + + G+V LQ+   S G+ E+ Y  +KPI +++ +I V    GK  +G TE+
Subjt:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEV-RPSGKLASGTTEV

Q5RF33 Vacuolar protein sorting-associated protein 26C6.9e-1540.23Show/hide
Query:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV
        +++K+ R N++Y   E L G ++++S+ S+ H G+ L + G+VNLQ+   S GV E+ Y  +KPI I+N +IE+   GK  SG TE+
Subjt:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV

Arabidopsis top hitse value%identityAlignment
AT1G48550.1 Vacuolar protein sorting-associated protein 267.3e-2866.3Show/hide
Query:  AVAMPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV
        A A  V +KLSR+NRIYR SE ++G+I++ S +SISH  IRL++NGSVNLQVRGGSAGVIES YGVIKPI IV ++IEV+ SGK+  GTTE+
Subjt:  AVAMPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV

AT1G48550.2 Vacuolar protein sorting-associated protein 267.3e-2866.3Show/hide
Query:  AVAMPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV
        A A  V +KLSR+NRIYR SE ++G+I++ S +SISH  IRL++NGSVNLQVRGGSAGVIES YGVIKPI IV ++IEV+ SGK+  GTTE+
Subjt:  AVAMPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCCGTATGTGCTTTTGCAGTTGCAATGCCAGTAGAGCTCAAGCTTTCTCGAACTAATCGTATCTACCGGCCTTCTGAACATCTTCAAGGCCAGATCATTGTTAATTCTCG
TTCCTCGATTTCCCATAGTGGAATTCGCCTCGCTCTCAATGGATCCGTCAATTTGCAGGTTCGTGGAGGATCTGCGGGAGTTATTGAGTCAGTTTACGGTGTCATCAAGC
CTATTGTGATAGTGAATAGGAGCATTGAGGTAAGACCATCTGGAAAGCTTGCTTCAGGTACAACCGAGGTAAATTAG
mRNA sequenceShow/hide mRNA sequence
CCCGTATGTGCTTTTGCAGTTGCAATGCCAGTAGAGCTCAAGCTTTCTCGAACTAATCGTATCTACCGGCCTTCTGAACATCTTCAAGGCCAGATCATTGTTAATTCTCG
TTCCTCGATTTCCCATAGTGGAATTCGCCTCGCTCTCAATGGATCCGTCAATTTGCAGGTTCGTGGAGGATCTGCGGGAGTTATTGAGTCAGTTTACGGTGTCATCAAGC
CTATTGTGATAGTGAATAGGAGCATTGAGGTAAGACCATCTGGAAAGCTTGCTTCAGGTACAACCGAGGTAAATTAG
Protein sequenceShow/hide protein sequence
PVCAFAVAMPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEVN