CuGenDBv2

Gene ID	Lsi02G002400
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Down syndrome critical region protein 3 homolog isoform X1
Genome location	chr02:2030746..2033065
RNA-Seq Expression	Lsi02G002400
Synteny	Lsi02G002400
Gene Ontology terms	GO:0006886 - intracellular protein transport (biological process) GO:0042147 - retrograde transport, endosome to Golgi (biological process) GO:0048768 - root hair cell tip growth (biological process) GO:0005829 - cytosol (cellular component) GO:0010008 - endosome membrane (cellular component) GO:0030904 - retromer complex (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7019907.1 Down syndrome critical region protein 3 [Cucurbita argyrosperma subsp. argyrosperma]

2.5e-18

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Query:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD
        PFSIEF+VYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCR DD
Subjt:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD

XP_004137506.1 vacuolar protein sorting-associated protein 26C [Cucumis sativus]

4.3e-18

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Query:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD
        PFSIEF+VYIVITFQSELSKLHPKTDPRTPRLWLAIESLP+ELLRCR DD
Subjt:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD

XP_022924207.1 Down syndrome critical region protein 3 homolog isoform X1 [Cucurbita moschata]

2.5e-18

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Query:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD
        PFSIEF+VYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCR DD
Subjt:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD

XP_038895697.1 vacuolar protein sorting-associated protein 26C isoform X1 [Benincasa hispida]

2.5e-18

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Query:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD
        PFSIEF+VYIVITF+SELSKLHPKTDPRTPRLWLAIE+LPLELLRCRLDD
Subjt:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD

XP_038895698.1 vacuolar protein sorting-associated protein 26C isoform X2 [Benincasa hispida]

2.5e-18

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Query:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD
        PFSIEF+VYIVITF+SELSKLHPKTDPRTPRLWLAIE+LPLELLRCRLDD
Subjt:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LT45 Uncharacterized protein

2.1e-18

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Query:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD
        PFSIEF+VYIVITFQSELSKLHPKTDPRTPRLWLAIESLP+ELLRCR DD
Subjt:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD

A0A1S3CMM2 Down syndrome critical region protein 3 homolog isoform X1

3.5e-18

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Query:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD
        PFSIEF+VYIVITFQSELSKLHPKTDPRTPRLWLAIESLP+EL+RCR DD
Subjt:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD

A0A1S3CPJ5 Down syndrome critical region protein 3 homolog isoform X3

3.5e-18

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Query:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD
        PFSIEF+VYIVITFQSELSKLHPKTDPRTPRLWLAIESLP+EL+RCR DD
Subjt:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD

A0A5D3BIU2 Down syndrome critical region protein 3-like protein isoform X1

3.5e-18

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Query:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD
        PFSIEF+VYIVITFQSELSKLHPKTDPRTPRLWLAIESLP+EL+RCR DD
Subjt:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD

A0A6J1E8A3 Down syndrome critical region protein 3 homolog isoform X1

1.2e-18

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Query:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD
        PFSIEF+VYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCR DD
Subjt:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G48550.1 Vacuolar protein sorting-associated protein 26

4.9e-12

59.18

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Query:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLD
        PFS+EF+V I I+F+S+L+K  PK+DP  PRLW+A+E LPLEL+R + D
Subjt:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLD

AT1G48550.2 Vacuolar protein sorting-associated protein 26

4.9e-12

59.18

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Query:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLD
        PFS+EF+V I I+F+S+L+K  PK+DP  PRLW+A+E LPLEL+R + D
Subjt:  PFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLD

Sequences

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CDS sequence

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mRNA sequence

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ATGTTTTATAAGTTTATGTTTATCGTTATCGTGTATGGTTGTTCTTGTACCCTCAGAGCATATTTTCTTGACCCTGGATTACAGCCTTACAAATTGTCCATACTTCCATT
TTCAATTGAATTCCAAGTTTACATCGTTATAACCTTTCAGTCAGAGCTATCAAAGTTACATCCCAAGACTGATCCAAGAACTCCAAGACTATGGCTTGCAATTGAATCTC
TACCCCTTGAGCTTCTTCGATGTCGGTTAGACGATTAGTTCAGCTGATCCATATACTGAATTTTCATTTATGTCCTCTGGTGGATGATGTAAAATTTGAAAAGCATTTGG
TACCTTCATCTTATGGGTTTCTGGTTGTTTTTTCTTCGGAGTGTAGAAAACCATGTTCAAGACCACGTGTATTATGTATACACATTTGTACTCTAAAAGAAAATTTCTAA
TACTACTGTACACCCTTTGTTCACACTAGAAATTTGTCTTTGTTAATATTTTAGTGGACTTTACACTAATGTGAGTAAATCCCACACTATTTTTTAAAGTGTGGAAAACG
TGTCAAACAACATACGGAGGTAGTATGAAAAAACTTTCATATTCCCGTCGTACTTAAAATTTTCTCATGTGTTAGATTGATTTTTTTCCCTTC

Protein sequence

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MFYKFMFIVIVYGCSCTLRAYFLDPGLQPYKLSILPFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWLAIESLPLELLRCRLDD

Lsi02G002400 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome