CuGenDBv2

Gene ID	Lsi02G002830
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Coiled-coil domain-containing protein 12
Genome location	chr02:2434608..2439305
RNA-Seq Expression	Lsi02G002830
Synteny	Lsi02G002830
Gene Ontology terms	GO:0005684 - U2-type spliceosomal complex (cellular component) GO:0071014 - post-mRNA release spliceosomal complex (cellular component)
InterPro domains	IPR013169 - mRNA splicing factor Cwf18-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6584286.1 Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia]

9.3e-65

83.53

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE
        MA+E+DSVEQVAAARKERL+ALRAAQELL+TSDEKNSGGEDKENGAT D EET                 NL+MKFRNYVPHDKELQEGKL PPVLPKFE
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE

Query:  DPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE
        DPV TEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN  E
Subjt:  DPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE

XP_004137537.1 coiled-coil domain-containing protein 12 [Cucumis sativus]

8.4e-66

83.53

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE
        MA+EEDSVEQVAAARKERLKALRAAQELL+ SDEKNSGGEDKENGAT D++ET                 NLNMKFRNYVPHDKELQEGKLAPPVLPKFE
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE

Query:  DPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE
        DPVT+EPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQ+AEGD+D+NGAE
Subjt:  DPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE

XP_008437152.1 PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo]

2.2e-66

85.29

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE
        MA+EEDS EQVAAARKERLKALRAAQELL+ SDEKNS GEDKENGATADT+ET                 NLNMKFRNYVPHDKELQEGKLAPPVLPKFE
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE

Query:  DPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE
        DPVTTEPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQNGAE
Subjt:  DPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE

XP_023542240.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]

9.3e-65

83.04

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE
        MA+EEDSVEQVAAAR+ERL+ALRAAQELL+  DEK SGGEDKENGA ADTEET                 NL MKFRNYVPHDKELQEGKLAPPVLPKFE
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE

Query:  DPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG
        DPV TEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN  EG
Subjt:  DPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG

XP_038894163.1 coiled-coil domain-containing protein 12 [Benincasa hispida]

4.0e-68

86.55

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE
        MA+EEDSVEQVAAARKERL+ALRAAQELL+ SDEKNSGGEDKENGATAD EET                 NLNMKFRNYVPHDKELQEGKLAPPVLPKFE
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE

Query:  DPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG
        DPVTTEP QLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG
Subjt:  DPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LR08 Uncharacterized protein

4.1e-66

83.53

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE
        MA+EEDSVEQVAAARKERLKALRAAQELL+ SDEKNSGGEDKENGAT D++ET                 NLNMKFRNYVPHDKELQEGKLAPPVLPKFE
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE

Query:  DPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE
        DPVT+EPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQ+AEGD+D+NGAE
Subjt:  DPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE

A0A1S3ATB1 coiled-coil domain-containing protein 12

1.1e-66

85.29

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE
        MA+EEDS EQVAAARKERLKALRAAQELL+ SDEKNS GEDKENGATADT+ET                 NLNMKFRNYVPHDKELQEGKLAPPVLPKFE
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE

Query:  DPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE
        DPVTTEPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQNGAE
Subjt:  DPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE

A0A5D3BJ95 Coiled-coil domain-containing protein 12

1.1e-66

85.29

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE
        MA+EEDS EQVAAARKERLKALRAAQELL+ SDEKNS GEDKENGATADT+ET                 NLNMKFRNYVPHDKELQEGKLAPPVLPKFE
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE

Query:  DPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE
        DPVTTEPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQNGAE
Subjt:  DPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE

A0A6J1GST8 coiled-coil domain-containing protein 12-like

6.5e-64

81.87

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE
        MA+EEDSVEQVAAAR+ERL+ALRAAQELL+  DEK SGGED+ENGA ADTEE                  NL MKFRNYVPHDKELQEGKLAPPVLPKFE
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE

Query:  DPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG
        DPV TEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN  EG
Subjt:  DPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG

A0A6J1JYP1 coiled-coil domain-containing protein 12-like isoform X1

1.7e-64

81.87

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE
        MA+EEDSVEQVAAAR+ERL+ALR AQELL+  DEK SGGED+ENG  ADTEET                 NL MKFRNYVPHDKELQEGKLAPPVLPKFE
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE

Query:  DPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG
        DPV TEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNG EG
Subjt:  DPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG

SwissProt top hits

e value

%identity

Alignment

Q8R344 Coiled-coil domain-containing protein 12

2.1e-11

34.78

Show/hide

Query:  VEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENG--ATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKL--APPVL--PKFED
        +E+ A  RKERLKALR           + +G +D+E+G   T    E       HR            ++ RNYVP D++L+  ++  A PV    K ++
Subjt:  VEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENG--ATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKL--APPVL--PKFED

Query:  PVTTEPPQ--LKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA
         +    P+  ++E    N+AP+KP+WDL+RDV KKL+KLE+RTQ+A+ +L+ E+ K ++ +
Subjt:  PVTTEPPQ--LKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA

Q8WUD4 Coiled-coil domain-containing protein 12

1.2e-11

33.96

Show/hide

Query:  VEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKL--APPVL--PKFEDPV
        +E+ A  RKERLKALR           + +G +DKE+G          P   H +  +     +  ++ RNYVP D++L++ ++  A PV    K ++ +
Subjt:  VEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKL--APPVL--PKFEDPV

Query:  TTEPPQ--LKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA
            P+  ++E    N+AP+KP+WDL+RDV KKL+KL++RTQ+A+ +L+ E+ K ++ +
Subjt:  TTEPPQ--LKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA

Arabidopsis top hits

e value

%identity

Alignment

AT3G05070.1 CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink).

1.5e-41

61.82

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE
        MASE++S+EQ AAARKE LKALRAAQEL           E KE+G     EE                     MKFRNYVP  KELQ+GKLAPP LPKFE
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFE

Query:  DPVTTEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGD
        DP+   PP  + KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKA++KLMEEQEK+++ AE D
Subjt:  DPVTTEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTAGTGAAGAAGACTCCGTCGAGCAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAGCACTTCAGATGAGAAGAATTC
TGGAGGAGAGGATAAAGAGAATGGTGCTACTGCAGATACTGAAGAAACACGACTACCTACTGCCTGCCATCGCCAGTGTGCTAAGCTCTCTAGAACTTGTAATCTTAATA
TGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCAAAGTTTGAGGACCCTGTTACTACTGAACCTCCACAATTA
AAAGAGGACCCATTTGTGAATATTGCTCCAAAGAAACCGAACTGGGACCTTAGGAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATA
TAAGCTTATGGAGGAACAGGAAAAGCAAAAGCAGTCAGCTGAAGGAGACGATGACCAAAATGGTGCAGAGGGATAG

mRNA sequence

Show/hide mRNA sequence

GCGCAAGCCTTTTCCTCCCTCCCGCCATTGCTCGAAGCTTCTGAAGAAAAGTGTTATTCCTCTCGAGTTTCTCTATATTTTACGCACAATAGGCAATGGCTAGTGAAGAA
GACTCCGTCGAGCAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAGCACTTCAGATGAGAAGAATTCTGGAGGAGAGGATAA
AGAGAATGGTGCTACTGCAGATACTGAAGAAACACGACTACCTACTGCCTGCCATCGCCAGTGTGCTAAGCTCTCTAGAACTTGTAATCTTAATATGAAATTTCGGAACT
ATGTTCCTCATGATAAGGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCAAAGTTTGAGGACCCTGTTACTACTGAACCTCCACAATTAAAAGAGGACCCATTT
GTGAATATTGCTCCAAAGAAACCGAACTGGGACCTTAGGAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGAGGA
ACAGGAAAAGCAAAAGCAGTCAGCTGAAGGAGACGATGACCAAAATGGTGCAGAGGGATAGTATAGCACACAAGTTATGAGCTCTCCGATATTATAGTTGCAATAATATT
CACGGCTATTCTTGACATGCTTGGAGAAATTTGTCACTAAAGGACGATGGTGTTTCTGGTTCATAGGGTCAGTTTTTCTGTGACCTTTCTGATCATTCTTGGCTGCAAAT
CTTTTAATTTAGTTTTTATCTATATGGTGACTCATGGTGTTCCTTGACTAATTAGACCTCATACTGTATCTCATACTGGATAGTAATTTGTAATTTACCTATACTAAGAA
TAACTTTGTATTTCACTTTATCTTCTTTACGAACCGTTTTTTTCCCCATTTTTATCTGCTAGTTTATAATCTAC

Protein sequence

Show/hide protein sequence

MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQL
KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG

Lsi02G002830 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome