CuGenDBv2

Gene ID	Lsi02G002990
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	RPA-interacting B
Genome location	chr02:2581037..2583314
RNA-Seq Expression	Lsi02G002990
Synteny	Lsi02G002990
Gene Ontology terms	GO:0110165 - cellular anatomical structure (cellular component)
InterPro domains	IPR028155 - RPA-interacting protein, central domain IPR028156 - RPA-interacting protein IPR028158 - RPA-interacting protein, N-terminal domain

Homology

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GenBank top hits

e value

%identity

Alignment

TYJ99094.1 uncharacterized protein E5676_scaffold248G002980 [Cucumis melo var. makuwa]

3.7e-82

63.5

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Query:  MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQ----------------
        MEDD+ N  I+T RSSIKTHPRYNNQQSWKQK               LRENC KRVREGRSRLLWKMRLP+SSPTYPHSLNNRQ                
Subjt:  MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQ----------------

Query:  -------------------HAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSK---------------LSSGNNS-----Q
                            AADVLWEYEGI DAYEG+GEEILLEMQRIFYEDLNVD+RQKGDFADAV F K               L++  N+      
Subjt:  -------------------HAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSK---------------LSSGNNS-----Q

Query:  SQLFAESEGPILTWEDEEDEFLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV
        +Q FAESEGPI+TWEDEEDEFLARAVYEHMQLS+EK LEKFWCP+CKQGELQEN+H  IHCT CGLRLNKGNEV
Subjt:  SQLFAESEGPILTWEDEEDEFLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV

XP_008437393.1 PREDICTED: uncharacterized protein LOC103482820 [Cucumis melo]

2.6e-75

62.99

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Query:  MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQ----------------
        MEDD+ N  I+T RSSIKTHPRYNNQQSWKQK               LRENC KRVREGRSRLLWKMRLP+SSPTYPHSLNNRQ                
Subjt:  MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQ----------------

Query:  -------------------HAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDE
                            AADVLWEYEGI DAYEG+GEEILLEMQRIFYEDLNVD+RQK                        ESEGPI+TWEDEEDE
Subjt:  -------------------HAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDE

Query:  FLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV
        FLARAVYEHMQLS+EK LEKFWCP+CKQGELQEN+H  IHCT CGLRLNKGNEV
Subjt:  FLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV

XP_011651131.1 uncharacterized protein LOC101216926 isoform X1 [Cucumis sativus]

9.8e-75

62.99

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Query:  MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQ----------------
        ME+D  N  I+T RSSIKTHPRYNNQQSWKQK               LRENC KRVREGRSRLLWKMRLP+SSPTY HSLNNRQ                
Subjt:  MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQ----------------

Query:  -------------------HAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDE
                            AADVLWEYEGI DAYEG+GEEILLEMQRIFYEDLNVDLRQK                        ESE PI+TWEDEEDE
Subjt:  -------------------HAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDE

Query:  FLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV
        FLARAVYEHMQLS+EK LEKFWCP+CKQGELQENNH  IHCTHCGLRLNKGNEV
Subjt:  FLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV

XP_031737335.1 uncharacterized protein LOC101216926 isoform X3 [Cucumis sativus]

3.1e-76

63.28

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Query:  MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQ----------------
        ME+D  N  I+T RSSIKTHPRYNNQQSWKQK               LRENC KRVREGRSRLLWKMRLP+SSPTY HSLNNRQ                
Subjt:  MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQ----------------

Query:  -------------------HAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDE
                            AADVLWEYEGI DAYEG+GEEILLEMQRIFYEDLNVDLRQK                        ESE PI+TWEDEEDE
Subjt:  -------------------HAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDE

Query:  FLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEVFH
        FLARAVYEHMQLS+EK LEKFWCP+CKQGELQENNH  IHCTHCGLRLNKGNEVFH
Subjt:  FLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEVFH

XP_038893884.1 uncharacterized protein LOC120082685 isoform X1 [Benincasa hispida]

1.2e-77

63.78

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Query:  MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQ----------------
        MEDDD NS I+THRSSIKTHPRYNNQQSWKQK               LRENC KRVREGRSRLLWKMRLP++SP+YPHSLNNRQ                
Subjt:  MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQ----------------

Query:  -------------------HAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDE
                            AADVLWEYEG+QDAYEGEGEEILLEMQRIFYEDLN+DLR K                        ESEGPI+TWEDEEDE
Subjt:  -------------------HAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDE

Query:  FLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV
        FLARAVYEHM+L+SEK LEKFWCPICKQGELQENNH  IHCTHCGLRL KGNEV
Subjt:  FLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LTY4 Uncharacterized protein

4.8e-75

62.99

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Query:  MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQ----------------
        ME+D  N  I+T RSSIKTHPRYNNQQSWKQK               LRENC KRVREGRSRLLWKMRLP+SSPTY HSLNNRQ                
Subjt:  MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQ----------------

Query:  -------------------HAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDE
                            AADVLWEYEGI DAYEG+GEEILLEMQRIFYEDLNVDLRQK                        ESE PI+TWEDEEDE
Subjt:  -------------------HAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDE

Query:  FLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV
        FLARAVYEHMQLS+EK LEKFWCP+CKQGELQENNH  IHCTHCGLRLNKGNEV
Subjt:  FLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV

A0A1S3AU18 uncharacterized protein LOC103482820

1.3e-75

62.99

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Query:  MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQ----------------
        MEDD+ N  I+T RSSIKTHPRYNNQQSWKQK               LRENC KRVREGRSRLLWKMRLP+SSPTYPHSLNNRQ                
Subjt:  MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQ----------------

Query:  -------------------HAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDE
                            AADVLWEYEGI DAYEG+GEEILLEMQRIFYEDLNVD+RQK                        ESEGPI+TWEDEEDE
Subjt:  -------------------HAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDE

Query:  FLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV
        FLARAVYEHMQLS+EK LEKFWCP+CKQGELQEN+H  IHCT CGLRLNKGNEV
Subjt:  FLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV

A0A5D3BJ40 Uncharacterized protein

1.8e-82

63.5

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Query:  MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQ----------------
        MEDD+ N  I+T RSSIKTHPRYNNQQSWKQK               LRENC KRVREGRSRLLWKMRLP+SSPTYPHSLNNRQ                
Subjt:  MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQ----------------

Query:  -------------------HAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSK---------------LSSGNNS-----Q
                            AADVLWEYEGI DAYEG+GEEILLEMQRIFYEDLNVD+RQKGDFADAV F K               L++  N+      
Subjt:  -------------------HAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSK---------------LSSGNNS-----Q

Query:  SQLFAESEGPILTWEDEEDEFLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV
        +Q FAESEGPI+TWEDEEDEFLARAVYEHMQLS+EK LEKFWCP+CKQGELQEN+H  IHCT CGLRLNKGNEV
Subjt:  SQLFAESEGPILTWEDEEDEFLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV

A0A6J1C5Y2 uncharacterized protein LOC111008573 isoform X2

2.9e-72

59.77

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Query:  MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQ----------------
        ME++D NS  +  R S+KTHPRYNN QSWKQK               LRENCYKRVREGRSRLLWKMRLP+SSPTYPHSLNNRQ                
Subjt:  MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQ----------------

Query:  -------------------HAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDE
                              DVLWEYEGIQDAYEGEGEEILLEMQRIFYEDL+VD+RQKG                        SEGPI+TWEDEEDE
Subjt:  -------------------HAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDE

Query:  FLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEVFH
        FLARAVYEHMQL+SEK  EKFWCPICKQGEL ENN   IHCTHCGL+L+K NEV H
Subjt:  FLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEVFH

A0A6J1C935 uncharacterized protein LOC111008573 isoform X1

1.1e-71

59.84

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Query:  MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQ----------------
        ME++D NS  +  R S+KTHPRYNN QSWKQK               LRENCYKRVREGRSRLLWKMRLP+SSPTYPHSLNNRQ                
Subjt:  MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQ----------------

Query:  -------------------HAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDE
                              DVLWEYEGIQDAYEGEGEEILLEMQRIFYEDL+VD+RQKG                        SEGPI+TWEDEEDE
Subjt:  -------------------HAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDE

Query:  FLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV
        FLARAVYEHMQL+SEK  EKFWCPICKQGEL ENN   IHCTHCGL+L+K NEV
Subjt:  FLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G12760.1 unknown protein

3.2e-31

37.81

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Query:  RLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNN---------------------------RQHAADVLWEY-EGIQDAYEGEGEEILLEMQRIFYED
        + RENC++RVRE R+RLLWK+R+     +    + N                            +   D+LWEY EG++  YEG+ EEILLEMQ+IFY+D
Subjt:  RLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNN---------------------------RQHAADVLWEY-EGIQDAYEGEGEEILLEMQRIFYED

Query:  LNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDEFLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNE
        L  +    G F                          + TWEDEED++LA  V ++M L+SE++  + WCPICK+GEL E NH  I C  C ++LNKG E
Subjt:  LNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDEFLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNE

Query:  V
        V
Subjt:  V

Sequences

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CDS sequence

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ATGGAAGACGATGATTCAAATTCCGACATTGAAACCCATCGTTCTTCGATTAAGACCCATCCTCGCTACAACAATCAACAGTCATGGAAGCAGAAGGTGAATTTTCTCTT
TTCTCGATGCCTTGTTCTGTGTTTTTGGCGGCTGAGGGAAAACTGTTACAAGAGAGTCAGAGAAGGAAGAAGCCGCTTGCTCTGGAAGATGAGGTTGCCCATCTCCTCGC
CCACTTATCCCCATTCTCTTAATAATCGACAGCATGCTGCTGATGTTCTTTGGGAATATGAGGGAATTCAGGATGCTTATGAAGGTGAAGGTGAAGAAATATTGTTGGAA
ATGCAAAGGATTTTTTATGAAGATCTGAATGTTGATCTGAGACAAAAAGGTGATTTTGCTGATGCAGTTTTATTTTCTAAATTAAGTTCAGGCAACAATAGTCAAAGTCA
ACTCTTTGCAGAATCTGAAGGCCCTATTCTAACATGGGAAGATGAAGAAGACGAGTTCTTAGCCCGTGCAGTTTACGAGCATATGCAACTTAGTAGTGAGAAGGATCTTG
AGAAGTTTTGGTGTCCTATATGTAAACAAGGAGAGCTGCAAGAGAACAACCACTTGATGATACATTGCACTCATTGTGGACTTCGGCTTAACAAAGGCAATGAGGTTTTC
CACTAA

mRNA sequence

Show/hide mRNA sequence

TCAAAATGGAAGACGATGATTCAAATTCCGACATTGAAACCCATCGTTCTTCGATTAAGACCCATCCTCGCTACAACAATCAACAGTCATGGAAGCAGAAGGTGAATTTT
CTCTTTTCTCGATGCCTTGTTCTGTGTTTTTGGCGGCTGAGGGAAAACTGTTACAAGAGAGTCAGAGAAGGAAGAAGCCGCTTGCTCTGGAAGATGAGGTTGCCCATCTC
CTCGCCCACTTATCCCCATTCTCTTAATAATCGACAGCATGCTGCTGATGTTCTTTGGGAATATGAGGGAATTCAGGATGCTTATGAAGGTGAAGGTGAAGAAATATTGT
TGGAAATGCAAAGGATTTTTTATGAAGATCTGAATGTTGATCTGAGACAAAAAGGTGATTTTGCTGATGCAGTTTTATTTTCTAAATTAAGTTCAGGCAACAATAGTCAA
AGTCAACTCTTTGCAGAATCTGAAGGCCCTATTCTAACATGGGAAGATGAAGAAGACGAGTTCTTAGCCCGTGCAGTTTACGAGCATATGCAACTTAGTAGTGAGAAGGA
TCTTGAGAAGTTTTGGTGTCCTATATGTAAACAAGGAGAGCTGCAAGAGAACAACCACTTGATGATACATTGCACTCATTGTGGACTTCGGCTTAACAAAGGCAATGAGG
TTTTCCACTAACTTGATCTTAAAACCTTGTAGCTAACCATCCTCTTCTTAAATCCCATCTTTTACTCCAAGCTGCATATTAGGTTATTATTGTTATTCTTTTTTGGATAA
GCAGCATTTCATTGATAAATAAAATAAGGTAAAAGCCTGCACCCCGCAACATAATTTTCCAATTGGAAACTAAATTAGATAAACTAAAATGAGTAAAAAGGTGCTTAGTT
TTACACCAGTGAAAAGCAGTAGATAAGATCAAATCCACGAAATGATTAAAGGAGGAAAAAGAGCCTTTGAAAAGGCGGCCATTGCGCTCTCCCCAAAGAATCGAGAAGAA
AGCAGTCAAGCACGAGTAATAACCATATTAGGTTATTAGGTTCTTGCTATTACTTATAAATTAATGGTTGTTGTCTTTGTAAACGTGTCAGATTATTCTTACAACTAATA
TGTTACTTCCTGAAGGAATTAAGAAGACCACTCCCAACTTAGACTGGAAGTTGGTGCCTATGTTTATTGTCATGGCCATGTGAGGGATGTTATGTAAAATTTTGAAATAT
TTATTTAATGCGGGATATTTCAAATTAATGTTCCCTTCATTTTAGAAGATTTTGTTTATTTTTTCCCCATATTTCTAGCTAAAAGTCGATCACCTCTCTATTGAGATCTC
AAGTATATGTCGAATATACTGTTATACACTAGTCCATCTTTAGTATCCTAAGGCTCTATGAAAAATGTAAATATAAATAATGTTGGGGCAAGGTTGGGCCTTAGGACTTG
ACCTAGAGTAGAG

Protein sequence

Show/hide protein sequence

MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQHAADVLWEYEGIQDAYEGEGEEILLE
MQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDEFLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEVF
H

Lsi02G002990 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome