; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G003030 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G003030
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionBHLH domain-containing protein
Genome locationchr02:2612683..2613381
RNA-Seq ExpressionLsi02G003030
SyntenyLsi02G003030
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573012.1 putative serine/threonine-protein kinase PBL3, partial [Cucurbita argyrosperma subsp. sororia]6.3e-3696.67Show/hide
Query:  MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSS VRISDEQITDLVHKLQQLLPEIR+RHSDKVSA KVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_004152438.1 transcription factor PRE3 [Cucumis sativus]2.8e-3696.67Show/hide
Query:  MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSS+VRISDEQITDLVHKLQQLLPEIR+RHSDKVSA KVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_016899225.1 PREDICTED: transcription factor PRE3-like [Cucumis melo]3.7e-3696.67Show/hide
Query:  MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSS VRISDEQITDLVHKLQQLLPEIR+RHSDKVSA KVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_022955105.1 transcription factor PRE3-like [Cucurbita moschata]6.3e-3696.67Show/hide
Query:  MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSS VRISDEQITDLVHKLQQLLPEIR+RHSDKVSA KVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_023542851.1 transcription factor PRE3-like [Cucurbita pepo subsp. pepo]8.2e-3695.56Show/hide
Query:  MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSS +RISDEQITDLVHKLQQLLPEIR+RHSDKVSA KVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

TrEMBL top hitse value%identityAlignment
A0A0A0LQQ1 BHLH domain-containing protein1.4e-3696.67Show/hide
Query:  MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSS+VRISDEQITDLVHKLQQLLPEIR+RHSDKVSA KVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A1S4DU40 transcription factor PRE3-like1.8e-3696.67Show/hide
Query:  MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSS VRISDEQITDLVHKLQQLLPEIR+RHSDKVSA KVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A5D3BJ22 Transcription factor PRE3-like2.8e-3496.51Show/hide
Query:  SRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        SRSRQSS VRISDEQITDLVHKLQQLLPEIR+RHSDKVSA KVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  SRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A6J1GU92 transcription factor PRE3-like3.0e-3696.67Show/hide
Query:  MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSS VRISDEQITDLVHKLQQLLPEIR+RHSDKVSA KVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A6J1K5U5 transcription factor PRE3-like2.6e-3595.56Show/hide
Query:  MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSG SRSRQSS VRISDEQITDLVHKLQQLLPEIR+RHSDKVSA KVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

SwissProt top hitse value%identityAlignment
A2Z730 Transcription factor ILI75.2e-2572.22Show/hide
Query:  MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MS RSRSR SS  RI+DEQI DLV KLQ LLPE R R +D+V + +VLQETC+YIRSLHREVDDLSERL+ELLA +D  TAQAA+IR LL
Subjt:  MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL

B8APB5 Transcription factor ILI61.2e-2676.4Show/hide
Query:  SGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        S RSRSRQS + RI+DEQI+DLV KLQ LLPE R R +D+V +++VLQETCNYIRSLH+EVDDLSERLSELLATSD  +AQAAIIRSLL
Subjt:  SGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL

Q0DUR2 Transcription factor ILI61.2e-2676.4Show/hide
Query:  SGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        S RSRSRQS + RI+DEQI+DLV KLQ LLPE R R +D+V +++VLQETCNYIRSLH+EVDDLSERLSELLATSD  +AQAAIIRSLL
Subjt:  SGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL

Q8GW32 Transcription factor PRE64.2e-2775Show/hide
Query:  MSGR--SRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MS R  SRSRQS + RISD+QI+DLV KLQ L+PE+R R SDKVSA+KVLQETCNYIR+LHREVDDLS+RLSELLA++D  +A+AAIIRSLL
Subjt:  MSGR--SRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL

Q9CA64 Transcription factor PRE32.2e-2879.57Show/hide
Query:  MSG-RSRSRQSSNV-RISDEQITDLVHKLQQLLPEIR-HRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSG RSRSRQSS   RIS++QI DL+ KLQQLLPE+R  R SDKVSA +VLQ+TCNYIR+LHREVDDLSERLSELLA SDTAQAA+IRSLLTQ
Subjt:  MSG-RSRSRQSSNV-RISDEQITDLVHKLQQLLPEIR-HRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein3.0e-2875Show/hide
Query:  MSGR--SRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MS R  SRSRQS + RISD+QI+DLV KLQ L+PE+R R SDKVSA+KVLQETCNYIR+LHREVDDLS+RLSELLA++D  +A+AAIIRSLL
Subjt:  MSGR--SRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 11.6e-2979.57Show/hide
Query:  MSG-RSRSRQSSNV-RISDEQITDLVHKLQQLLPEIR-HRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSG RSRSRQSS   RIS++QI DL+ KLQQLLPE+R  R SDKVSA +VLQ+TCNYIR+LHREVDDLSERLSELLA SDTAQAA+IRSLLTQ
Subjt:  MSG-RSRSRQSSNV-RISDEQITDLVHKLQQLLPEIR-HRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.9e-2268.48Show/hide
Query:  MSGRSRSRQSSNV-RISDEQITDLVHKLQQLLPEI-RHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELL--ATSDTAQAAIIRSLL
        MS R RSRQ+SN  RISD+Q+ DLV KL+Q LPEI   R SDKVSA+KVLQETCNYIR LHREVD+LS+RLS+LL     D+ +AA+IRSLL
Subjt:  MSGRSRSRQSSNV-RISDEQITDLVHKLQQLLPEI-RHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELL--ATSDTAQAAIIRSLL

AT3G47710.1 BANQUO 31.4e-2264.44Show/hide
Query:  SGRSRSRQSSNVRISDEQITDLVHKLQQLLPEI-RHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        S +SRSRQ+    I+DEQI DLV +L +LLPE+  +R S KVSA++VLQETC+YIR+L +EVDDLSERLS+LL ++D+AQAA+IRSLL Q
Subjt:  SGRSRSRQSSNVRISDEQITDLVHKLQQLLPEI-RHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.2e-2167.39Show/hide
Query:  MSGRSRSRQSSNV-RISDEQITDLVHKLQQLLPEI-RHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLAT--SDTAQAAIIRSLL
        MS R RSRQSS+  RISD Q+ DLV KL+Q+LPEI + R SDK SA+KVLQETCNYIR+L+REVD+LSERLS+LL +   D+ +AA+IRSLL
Subjt:  MSGRSRSRQSSNV-RISDEQITDLVHKLQQLLPEI-RHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLAT--SDTAQAAIIRSLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGCAGATCTCGTTCAAGGCAATCAAGTAATGTAAGAATCAGCGATGAGCAAATCACTGATCTTGTTCACAAGTTGCAGCAGCTCTTGCCTGAGATTCGCCATCG
CCACTCCGACAAGGTTTCAGCAACGAAGGTTTTGCAAGAGACATGCAATTACATTCGAAGCCTACATAGAGAAGTGGATGATTTGAGTGAGAGATTGTCGGAGTTGTTGG
CCACATCGGACACTGCCCAAGCCGCCATTATTAGAAGCTTGCTCACTCAGTGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAACTATTTAAATAGATCACATAACCACAGCTTTTTCCCCCATGCATTCCTTCTTCTTCTTCACATTCTCCAAAAACTTCATCTTTTTCCTCAATAACCCTCTT
TAGATTCCATTTATACATATATATAATTAGATCAATATGTCTGGCAGATCTCGTTCAAGGCAATCAAGTAATGTAAGAATCAGCGATGAGCAAATCACTGATCTTGTTCA
CAAGTTGCAGCAGCTCTTGCCTGAGATTCGCCATCGCCACTCCGACAAGGTTTCAGCAACGAAGGTTTTGCAAGAGACATGCAATTACATTCGAAGCCTACATAGAGAAG
TGGATGATTTGAGTGAGAGATTGTCGGAGTTGTTGGCCACATCGGACACTGCCCAAGCCGCCATTATTAGAAGCTTGCTCACTCAGTGAATACATTTTATATATATATAT
AATCAAATGGGTTGTTATAAATTAAATTAAAGTTTCTTGCTTTAGGGTTTTTTTCTTGTTTCTTTTTAGAACTTTTTTGTTCAATGAATTCAGTTTGATTATGTAAGTTG
AGGCTTATGGTAAATTTAATATCCATAGTTTAATATA
Protein sequenceShow/hide protein sequence
MSGRSRSRQSSNVRISDEQITDLVHKLQQLLPEIRHRHSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ