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Lsi02G003140 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G003140
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein PXR1
Genome locationchr02:2702395..2702667
RNA-Seq ExpressionLsi02G003140
SyntenyLsi02G003140
Gene Ontology termsGO:0016853 - isomerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584261.1 hypothetical protein SDJN03_20193, partial [Cucurbita argyrosperma subsp. sororia]4.4e-1368Show/hide
Query:  MGETSEEKHE-----KEEKKDKEKHGEEEEEGDEKKKEKKE--------KKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNAPP
        MG TSEEKHE     KE+KKDKEKH EEEE+ D  KK+ K+        K+KK+KDPAD KDP K+R KLEKLEAKMQALAVKKEE+LKL+HEAEQNA P
Subjt:  MGETSEEKHE-----KEEKKDKEKHGEEEEEGDEKKKEKKE--------KKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNAPP

KAG7012203.1 Protein QUIRKY, partial [Cucurbita argyrosperma subsp. argyrosperma]3.3e-1370.83Show/hide
Query:  MGETSEEKHEKEEKKDKEKHGEEEEEGDEKKKEKK-----EKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQN---APPP
        MG  SEEKHE + +K ++KH   EEEGDEKKKEKK     +K+KK KDPADKKDP+K+R KLEKLE KMQALAVKKEE+LKLLHEAEQN   APPP
Subjt:  MGETSEEKHEKEEKKDKEKHGEEEEEGDEKKKEKK-----EKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQN---APPP

KAG7019857.1 hypothetical protein SDJN02_18822, partial [Cucurbita argyrosperma subsp. argyrosperma]5.7e-1369.61Show/hide
Query:  MGETSEEKHE-----KEEKKDKEKHGEEEEE---------GDEKKKEKKEKK-KKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNA
        MG TSEEKHE     KE+KKDKEKH EEEEE         G +K KE+ EKK KK+KDPAD KDP K+R KLEKLEAKMQALAVKKEE+LKL+HEAEQNA
Subjt:  MGETSEEKHE-----KEEKKDKEKHGEEEEE---------GDEKKKEKKEKK-KKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNA

Query:  PP
         P
Subjt:  PP

XP_008437610.1 PREDICTED: protein PXR1 [Cucumis melo]1.7e-1776.34Show/hide
Query:  MGETSEEKH----EKEEKKDKEKHGEEEEEGDEKKKEKKEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNAPPPS
        MGETSEEKH    EK+EKKDKEKHGE E+       E+K+KKKKEK+PADKKDP+K+R KLEKLEAKMQALAVKKEE+LKLLHEAEQN PPPS
Subjt:  MGETSEEKH----EKEEKKDKEKHGEEEEEGDEKKKEKKEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNAPPPS

XP_022994123.1 protein PXR1 [Cucurbita maxima]7.4e-1365.71Show/hide
Query:  MGETSEEKHEKEEKKDKEKHGEEEEEGDEKKKEKK------------EKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQN---A
        MG  SEEKHE + +K ++KH   EEEGDEK+KEKK            +K+KK KDPADKKDP+K+R KLEKLE KMQALAVKKEE+LKLLHEAEQN   A
Subjt:  MGETSEEKHEKEEKKDKEKHGEEEEEGDEKKKEKK------------EKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQN---A

Query:  PPPSS
        PPPSS
Subjt:  PPPSS

TrEMBL top hitse value%identityAlignment
A0A0A0LQQ8 Uncharacterized protein1.4e-1776.29Show/hide
Query:  MGETSEEKH-------EKEEKKDKEKHGEEEEEGDEKKKEKKEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNAPPPSS
        MGETSEEKH       EK+EKKDKEKHGEE E+     +EKK+KKKKEKDPADKKDP+K+R KLEKLE KMQALAVKKEE+LKLLHEAEQN PPPSS
Subjt:  MGETSEEKH-------EKEEKKDKEKHGEEEEEGDEKKKEKKEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNAPPPSS

A0A1S3AV24 protein PXR18.3e-1876.34Show/hide
Query:  MGETSEEKH----EKEEKKDKEKHGEEEEEGDEKKKEKKEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNAPPPS
        MGETSEEKH    EK+EKKDKEKHGE E+       E+K+KKKKEK+PADKKDP+K+R KLEKLEAKMQALAVKKEE+LKLLHEAEQN PPPS
Subjt:  MGETSEEKH----EKEEKKDKEKHGEEEEEGDEKKKEKKEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNAPPPS

A0A6J1C8D9 nucleolar protein 588.9e-1267.65Show/hide
Query:  MGETSEEKH--------EKEEKKDKEKHGEEEEEGDEKKKEKKEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNA----PPP
        MGE SEEKH        EK+EKKDKEKH E E    EKKKEKKEKKK  K+P DKKDP+K+R KLEKLE KM+ LA+KKEE+LKLL EAEQNA    PPP
Subjt:  MGETSEEKH--------EKEEKKDKEKHGEEEEEGDEKKKEKKEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNA----PPP

Query:  SS
        SS
Subjt:  SS

A0A6J1E7S6 protein PXR11.5e-1166Show/hide
Query:  MGETSEEKHE-----KEEKKDKEKHGEEEEE-----GDEKKKEK---KEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNAPP
        MG TSEEKHE     KE+KKDKEKH EEE++     G +K K+K   ++K+KK+KDPAD KDP K+R KLEKLE KMQALAVKKEE+LKL+HEAEQNA P
Subjt:  MGETSEEKHE-----KEEKKDKEKHGEEEEE-----GDEKKKEK---KEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNAPP

A0A6J1K499 protein PXR13.6e-1365.71Show/hide
Query:  MGETSEEKHEKEEKKDKEKHGEEEEEGDEKKKEKK------------EKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQN---A
        MG  SEEKHE + +K ++KH   EEEGDEK+KEKK            +K+KK KDPADKKDP+K+R KLEKLE KMQALAVKKEE+LKLLHEAEQN   A
Subjt:  MGETSEEKHEKEEKKDKEKHGEEEEEGDEKKKEKK------------EKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQN---A

Query:  PPPSS
        PPPSS
Subjt:  PPPSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G62750.1 unknown protein5.9e-0847.42Show/hide
Query:  ETSEEKHEKEEKKDKEKHGEEEEEGDEKKKEKKEKK-KKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQ--------NAPPPSS
        E  ++K +K++ +D +  G EE E  EKK +KK+KK KKEK+P DKKDP K+++KL+K+E K+QA+ +KK+E++KL+H+AEQ        +APPP++
Subjt:  ETSEEKHEKEEKKDKEKHGEEEEEGDEKKKEKKEKK-KKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQ--------NAPPPSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAAACCTCAGAAGAGAAGCACGAGAAGGAGGAGAAGAAAGATAAAGAGAAACATGGAGAAGAAGAAGAAGAAGGTGATGAGAAAAAGAAGGAAAAGAAAGAGAA
GAAGAAGAAAGAGAAAGACCCTGCAGATAAGAAAGACCCATCAAAAGTCAGACTGAAGCTTGAGAAGCTTGAAGCCAAGATGCAGGCTTTGGCTGTCAAGAAAGAAGAGC
TCTTGAAACTACTCCATGAAGCTGAACAGAATGCTCCACCACCTTCCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAAACCTCAGAAGAGAAGCACGAGAAGGAGGAGAAGAAAGATAAAGAGAAACATGGAGAAGAAGAAGAAGAAGGTGATGAGAAAAAGAAGGAAAAGAAAGAGAA
GAAGAAGAAAGAGAAAGACCCTGCAGATAAGAAAGACCCATCAAAAGTCAGACTGAAGCTTGAGAAGCTTGAAGCCAAGATGCAGGCTTTGGCTGTCAAGAAAGAAGAGC
TCTTGAAACTACTCCATGAAGCTGAACAGAATGCTCCACCACCTTCCTCTTGA
Protein sequenceShow/hide protein sequence
MGETSEEKHEKEEKKDKEKHGEEEEEGDEKKKEKKEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNAPPPSS