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Lsi02G003300 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G003300
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationchr02:2835451..2839536
RNA-Seq ExpressionLsi02G003300
SyntenyLsi02G003300
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER27960.1 DNA-directed RNA polymerase subunit beta' [Striga asiatica]3.7e-0429.58Show/hide
Query:  MDSEHITTYPISSMLFNH--------------------LKKLMRFNIQVVLSQNFESFIATIRKLNVFVHSTSSNQRRIKLLRVICCENDQPLSVARRPN
        +D  H T+ PI +  F H                     ++L+R + Q++L +N +     IR+LNV VH  S ++  ++LL V+  EN+ P   A RP 
Subjt:  MDSEHITTYPISSMLFNH--------------------LKKLMRFNIQVVLSQNFESFIATIRKLNVFVHSTSSNQRRIKLLRVICCENDQPLSVARRPN

Query:  SVDEIQQSRQSHSAFH----LLFFFLRVQSMSSIAIMDLLVV
         V+++Q+  Q H A      L FF   +Q +S + I+ L++V
Subjt:  SVDEIQQSRQSHSAFH----LLFFFLRVQSMSSIAIMDLLVV
TrEMBL top hitse value%identityAlignment
A0A5A7P5A9 DNA-directed RNA polymerase subunit beta1.8e-0429.58Show/hide
Query:  MDSEHITTYPISSMLFNH--------------------LKKLMRFNIQVVLSQNFESFIATIRKLNVFVHSTSSNQRRIKLLRVICCENDQPLSVARRPN
        +D  H T+ PI +  F H                     ++L+R + Q++L +N +     IR+LNV VH  S ++  ++LL V+  EN+ P   A RP 
Subjt:  MDSEHITTYPISSMLFNH--------------------LKKLMRFNIQVVLSQNFESFIATIRKLNVFVHSTSSNQRRIKLLRVICCENDQPLSVARRPN

Query:  SVDEIQQSRQSHSAFH----LLFFFLRVQSMSSIAIMDLLVV
         V+++Q+  Q H A      L FF   +Q +S + I+ L++V
Subjt:  SVDEIQQSRQSHSAFH----LLFFFLRVQSMSSIAIMDLLVV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGTGAGCATATCACCACTTATCCCATATCATCAATGCTCTTTAATCACCTCAAAAAGCTCATGCGTTTCAACATTCAAGTAGTTCTTAGCCAAAACTTCGAAAG
CTTCATAGCTACAATAAGAAAGCTTAATGTGTTTGTCCATTCTACCTCTTCGAATCAACGTCGGATCAAGCTTCTCCGCGTGATTTGTTGTGAAAATGATCAGCCTCTCT
CCGTCGCACGCCGACCAAATTCCGTCGATGAAATTCAACAATCCAGACAAAGTCACTCTGCTTTTCACCTCCTCTTCTTCTTTCTTCGTGTACAATCGATGTCTTCAATC
GCGATTATGGATTTACTCGTTGTCTCAATTAGAAGCTTCCGAAGCTCTGTATTGTCTTTCACTGATGTTAATTCCAAATCAAAATTCGCCATGGCGGCAATCATCATCGA
TTTCCCTATCCCCGATGGGCCGTACAGAAGTGTACAGCTTCCTCCGCCTCCGATTCACCATGATTTCTCTCTCTTCCTTCAATACATGCTTCAAATACGCTTCCATTACA
AGTTCTCGATGCTTCTTGTGAAATTCAAGCCGTATCTCCGACCGCACAATGTTGATTGTTATTCCGATGCGGCGGTTTTGCTCAAAGTCCACCAGAACTCAGCATTTTCA
TACTCATCGATCAGCTTCAACTGCCGCAAAGGCTCTGTTCCCACTGAGGCGTTCGCCCATGAATTTGTAGATTACGATTCGAATATACGAATAAGGATAGACGCAAACAT
GATCGTCGCGAGTCTATGGCTTGTTAATGTTAAGATCTCCATTATCGTCAGCGGCCTCTTTTTGACAACCGCCTTGCCGGAGCGGCCGTCAGAGTTTTCGGAACTTGATG
TTCCATTCGTCTCCGAACTTCTGGAAGTGGCATCTATGGAAATTACGTTCTGTGATAAAAATAAGATACAAATGACCGTAGATACGTGTCAGCCTGTGAGTGGACGAATT
ATTTCTTTCATTCACACGATAGGAGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAGTGAGCATATCACCACTTATCCCATATCATCAATGCTCTTTAATCACCTCAAAAAGCTCATGCGTTTCAACATTCAAGTAGTTCTTAGCCAAAACTTCGAAAG
CTTCATAGCTACAATAAGAAAGCTTAATGTGTTTGTCCATTCTACCTCTTCGAATCAACGTCGGATCAAGCTTCTCCGCGTGATTTGTTGTGAAAATGATCAGCCTCTCT
CCGTCGCACGCCGACCAAATTCCGTCGATGAAATTCAACAATCCAGACAAAGTCACTCTGCTTTTCACCTCCTCTTCTTCTTTCTTCGTGTACAATCGATGTCTTCAATC
GCGATTATGGATTTACTCGTTGTCTCAATTAGAAGCTTCCGAAGCTCTGTATTGTCTTTCACTGATGTTAATTCCAAATCAAAATTCGCCATGGCGGCAATCATCATCGA
TTTCCCTATCCCCGATGGGCCGTACAGAAGTGTACAGCTTCCTCCGCCTCCGATTCACCATGATTTCTCTCTCTTCCTTCAATACATGCTTCAAATACGCTTCCATTACA
AGTTCTCGATGCTTCTTGTGAAATTCAAGCCGTATCTCCGACCGCACAATGTTGATTGTTATTCCGATGCGGCGGTTTTGCTCAAAGTCCACCAGAACTCAGCATTTTCA
TACTCATCGATCAGCTTCAACTGCCGCAAAGGCTCTGTTCCCACTGAGGCGTTCGCCCATGAATTTGTAGATTACGATTCGAATATACGAATAAGGATAGACGCAAACAT
GATCGTCGCGAGTCTATGGCTTGTTAATGTTAAGATCTCCATTATCGTCAGCGGCCTCTTTTTGACAACCGCCTTGCCGGAGCGGCCGTCAGAGTTTTCGGAACTTGATG
TTCCATTCGTCTCCGAACTTCTGGAAGTGGCATCTATGGAAATTACGTTCTGTGATAAAAATAAGATACAAATGACCGTAGATACGTGTCAGCCTGTGAGTGGACGAATT
ATTTCTTTCATTCACACGATAGGAGTGTAG
Protein sequenceShow/hide protein sequence
MDSEHITTYPISSMLFNHLKKLMRFNIQVVLSQNFESFIATIRKLNVFVHSTSSNQRRIKLLRVICCENDQPLSVARRPNSVDEIQQSRQSHSAFHLLFFFLRVQSMSSI
AIMDLLVVSIRSFRSSVLSFTDVNSKSKFAMAAIIIDFPIPDGPYRSVQLPPPPIHHDFSLFLQYMLQIRFHYKFSMLLVKFKPYLRPHNVDCYSDAAVLLKVHQNSAFS
YSSISFNCRKGSVPTEAFAHEFVDYDSNIRIRIDANMIVASLWLVNVKISIIVSGLFLTTALPERPSEFSELDVPFVSELLEVASMEITFCDKNKIQMTVDTCQPVSGRI
ISFIHTIGV