CuGenDBv2

Gene ID	Lsi02G003440
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	B12D protein
Genome location	chr02:2934038..2936227
RNA-Seq Expression	Lsi02G003440
Synteny	Lsi02G003440
Gene Ontology terms	GO:0000380 - alternative mRNA splicing, via spliceosome (biological process) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR010530 - NADH-ubiquinone reductase complex 1 MLRQ subunit

Homology

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GenBank top hits

e value

%identity

Alignment

KGN64280.1 hypothetical protein Csa_013651 [Cucumis sativus]

2.5e-42

81.98

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Query:  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS
        MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEV                 RVTKENRAAGVLDNFAEGEKY+EHFLRKFVRNKSPEIMPS
Subjt:  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS

Query:  INNFFTDPSRN
        INNFFTDP+RN
Subjt:  INNFFTDPSRN

XP_004152455.2 uncharacterized protein LOC101218501 isoform X2 [Cucumis sativus]

2.5e-42

81.98

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Query:  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS
        MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEV                 RVTKENRAAGVLDNFAEGEKY+EHFLRKFVRNKSPEIMPS
Subjt:  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS

Query:  INNFFTDPSRN
        INNFFTDP+RN
Subjt:  INNFFTDPSRN

XP_008437938.1 PREDICTED: uncharacterized protein LOC103483212 [Cucumis melo]

1.6e-41

81.08

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Query:  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS
        MAPSS LSRWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEV                 RV+KENRAAGVLDNFAEGEKY+EHFLRKFVRNKSPEIMPS
Subjt:  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS

Query:  INNFFTDPSRN
        INNFFTDPSRN
Subjt:  INNFFTDPSRN

XP_031736912.1 uncharacterized protein LOC101218501 isoform X1 [Cucumis sativus]

1.7e-43

82.88

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Query:  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS
        MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEVR+               RVTKENRAAGVLDNFAEGEKY+EHFLRKFVRNKSPEIMPS
Subjt:  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS

Query:  INNFFTDPSRN
        INNFFTDP+RN
Subjt:  INNFFTDPSRN

XP_038893556.1 uncharacterized protein LOC120082448 [Benincasa hispida]

1.1e-42

83.78

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Query:  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS
        MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEV                 RV+KENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS
Subjt:  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS

Query:  INNFFTDPSRN
        INNFFTDPSRN
Subjt:  INNFFTDPSRN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQT3 Uncharacterized protein

1.2e-42

81.98

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Query:  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS
        MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEV                 RVTKENRAAGVLDNFAEGEKY+EHFLRKFVRNKSPEIMPS
Subjt:  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS

Query:  INNFFTDPSRN
        INNFFTDP+RN
Subjt:  INNFFTDPSRN

A0A1S3AVT0 uncharacterized protein LOC103483212

7.8e-42

81.08

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Query:  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS
        MAPSS LSRWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEV                 RV+KENRAAGVLDNFAEGEKY+EHFLRKFVRNKSPEIMPS
Subjt:  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS

Query:  INNFFTDPSRN
        INNFFTDPSRN
Subjt:  INNFFTDPSRN

A0A5A7UIX5 Uncharacterized protein

7.8e-42

81.08

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Query:  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS
        MAPSS LSRWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEV                 RV+KENRAAGVLDNFAEGEKY+EHFLRKFVRNKSPEIMPS
Subjt:  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS

Query:  INNFFTDPSRN
        INNFFTDPSRN
Subjt:  INNFFTDPSRN

A0A6J1C941 uncharacterized protein LOC111009092

9.5e-40

80.18

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Query:  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS
        MAPS+ +SRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEV                 RV+KENR+AGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS
Subjt:  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS

Query:  INNFFTDPSRN
        INNFFTDPSRN
Subjt:  INNFFTDPSRN

A0A6J1E888 uncharacterized protein LOC111431708

9.5e-40

80.18

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Query:  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS
        MAPS+ ++RWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEV                 RVTKENRAAGVLDNFAEGEKY EHFLRKFVRNKSPEIMPS
Subjt:  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPS

Query:  INNFFTDPSRN
        INNFFTDPSRN
Subjt:  INNFFTDPSRN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G29970.1 B12D protein

4.1e-19

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Query:  LSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPSINNFFT
        + RW+RPEVYPL  A+G    +  FQL RN  +NP+                  R+ KE+R  G+L+N  EGEKYA+H  RK++R + P++MPS+N FF+
Subjt:  LSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPSINNFFT

AT3G48140.1 B12D protein

6.5e-33

67.65

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Query:  SRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPSINNFFTD
        SRWLRPEVYPLFAA GVAVGIC F L+RNI  NPEV                 R TKENRAAG+LDN AEGEKY E+FLRKFVRNK PEIMP +N FFTD
Subjt:  SRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPSINNFFTD

Query:  PS
        P+
Subjt:  PS

Sequences

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CDS sequence

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ATGGCTCCTTCCTCCAACCTTAGTCGATGGCTGAGGCCTGAGGTTTACCCACTTTTCGCGGCGGTAGGAGTGGCCGTCGGAATCTGCGGATTTCAGTTAGTCCGTAACAT
CTGCATCAATCCTGAAGTCAGGGTTTTCTTCTGCAACATAGAGAGTAGACCTTGCCAAGAGGATAGGTCAAGAGTGACCAAGGAGAATAGAGCCGCTGGAGTCCTGGATA
ACTTTGCTGAGGGAGAGAAGTATGCCGAACATTTCCTGAGGAAATTCGTGCGCAACAAGTCCCCAGAAATTATGCCATCCATCAACAACTTCTTCACTGACCCAAGTCGA
AACTAA

mRNA sequence

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AAATTTAATCACTATAATTAAAATTTTCTCCCTAGATTTAGATAAGATAGATTTTGCATTAAAATCGGAAATATGTTGTATAAATAACCCTAGTTTTGAAGTTACCCTAC
GAACCGAGGAAATTCAAACATTTGTCCACGTTTCAGCTAATAATTGGCTGAATGTCCAGTAAAAAGCCGCATAGCAACAGCCAATTATCTCCGACTCCGAGTCTAATTTT
ATAGAAAAATAATTTATATATATATAAATCCCGAAATTCTCATCTCCTTCCCCCACAACTTTCCGATTCAGCCGCGTCTCAGCCTCTTCGATCCGCTTCCTCCGCCGATA
TTCATCAATGGCTCCTTCCTCCAACCTTAGTCGATGGCTGAGGCCTGAGGTTTACCCACTTTTCGCGGCGGTAGGAGTGGCCGTCGGAATCTGCGGATTTCAGTTAGTCC
GTAACATCTGCATCAATCCTGAAGTCAGGGTTTTCTTCTGCAACATAGAGAGTAGACCTTGCCAAGAGGATAGGTCAAGAGTGACCAAGGAGAATAGAGCCGCTGGAGTC
CTGGATAACTTTGCTGAGGGAGAGAAGTATGCCGAACATTTCCTGAGGAAATTCGTGCGCAACAAGTCCCCAGAAATTATGCCATCCATCAACAACTTCTTCACTGACCC
AAGTCGAAACTAAGAATGCTACAATGAATGAATGAATTACACATTAGTCTGGATATAGATTTGAATTTGGATCGTTGGTGGGTTGGTGGCTGTAAACTAATGCTGCTGTT
ACGTTTGCTTTTATTCTTGATCTGAGAAAGTTTGAAAACAGTGGTTTGATGGATGAAATAAACTATTCTGAACCAAAATTTGATTTCAATTATTGTGAAATTCTGATGTC
AAGGATATGTGAATTGTCTGATTCTGTGTTATAACAGTGTTTGGAGCTTGAGAATGTTGTGTGTGGAACATTCTTTTTTGGGGAATAGGAGAGTTTTTAATGATTCAATT
TAATTGGTGGAACTTTATGTGATATGATAGATGTTTATTGCAAGTATATTTTCAAATTTTGGTGGACTCAAACACTATGTTTTTTTTGGACAATATGTGAAATGAAAAAT
TAAACCCCAAACCTTGAAGTTTATAGT

Protein sequence

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MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPSINNFFTDPSR
N

Lsi02G003440 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome