; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G003540 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G003540
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionHIG1 domain-containing protein
Genome locationchr02:3034545..3035495
RNA-Seq ExpressionLsi02G003540
SyntenyLsi02G003540
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007667 - Hypoxia induced protein, domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152465.1 RING-H2 finger protein ATL48 [Cucumis sativus]1.4e-3492.68Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        MSS+EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQMLMRARVVVQGATVALMVGTA+YYG+NPWRSS
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

XP_008438139.1 PREDICTED: RING-H2 finger protein ATL48 [Cucumis melo]1.8e-3492.68Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        MSS+EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQGATVALMVGTAFYYG+NPWRSS
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

XP_022954948.1 RING-H2 finger protein ATL48-like [Cucurbita moschata]1.8e-3495.12Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        MSS EPNLDEFFVEKKRARNPLVPVGA VTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYG+NPWR S
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

XP_023541211.1 RING-H2 finger protein ATL48-like [Cucurbita pepo subsp. pepo]4.8e-3596.34Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        MSS EPNLDEFFVEKKRARNPLVP+GALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWR S
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

XP_038895243.1 RING-H2 finger protein ATL48-like [Benincasa hispida]2.6e-3698.78Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYG+NPWRSS
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

TrEMBL top hitse value%identityAlignment
A0A0A0LTF8 HIG1 domain-containing protein6.8e-3592.68Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        MSS+EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQMLMRARVVVQGATVALMVGTA+YYG+NPWRSS
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

A0A1S3AVM7 RING-H2 finger protein ATL488.9e-3592.68Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        MSS+EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQGATVALMVGTAFYYG+NPWRSS
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

A0A5A7UHA1 RING-H2 finger protein ATL488.9e-3592.68Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        MSS+EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQGATVALMVGTAFYYG+NPWRSS
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

A0A6J1GSJ9 RING-H2 finger protein ATL48-like8.9e-3595.12Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        MSS EPNLDEFFVEKKRARNPLVPVGA VTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYG+NPWR S
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

A0A6J1K3J5 RING-H2 finger protein ATL48-like2.6e-3495.12Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        MSS E NLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYG+NPWR S
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

SwissProt top hitse value%identityAlignment
Q4VC39 Putative HIG1 domain family member 2B1.5e-0744.29Show/hide
Query:  SEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATV-ALMVGTA
        S      E F+ K R  NP+VP+G L TA VLT GL  F QGNSQ  +++M  ++  QG T+ A+++G A
Subjt:  SEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATV-ALMVGTA

Q6CBQ8 Respiratory supercomplex factor 1, mitochondrial1.3e-0644.83Show/hide
Query:  PLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNP
        PLVP+G L T G L     + R GN +    +  ARV  QG TVA ++G A YYG +P
Subjt:  PLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNP

Q7X843 RING-H2 finger protein ATL481.2e-3181.25Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWR
        MSS EP++++ F EKKR RNPLVP+GAL+TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQGATVALMVGT +YYGDNPW+
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWR

Q9BW72 HIG1 domain family member 2A, mitochondrial2.8e-0953.97Show/hide
Query:  EFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATV-ALMVGTA
        E FV K R  NP+VP+G L TA  LT GL SF +GNSQ  Q++MR R+  QG TV A+++G A
Subjt:  EFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATV-ALMVGTA

Q9CQJ1 HIG1 domain family member 2A3.4e-0744.29Show/hide
Query:  SEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGAT-VALMVGTA
        S      E F+ K R  NP+VP+G L TA  LT GL  F +G S   Q++MR R+  QG T VA+++G A
Subjt:  SEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGAT-VALMVGTA

Arabidopsis top hitse value%identityAlignment
AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein8.2e-3381.25Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWR
        MSS EP++++ F EKKR RNPLVP+GAL+TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQGATVALMVGT +YYGDNPW+
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCGGAGGAACCCAATTTGGACGAGTTCTTCGTCGAGAAGAAGCGCGCTAGAAACCCTTTGGTCCCCGTCGGTGCACTTGTCACTGCTGGGGTTCTCACTGCTGG
ATTAATAAGCTTTAGACAAGGCAACTCTCAATTGGGGCAGATGCTAATGAGAGCTCGTGTGGTTGTCCAAGGTGCTACAGTAGCACTGATGGTTGGCACGGCTTTCTACT
ATGGAGATAATCCTTGGCGGTCGAGTTAA
mRNA sequenceShow/hide mRNA sequence
AAGGAAGAAGGAAGAAGGAAGAAGGAAGAAGGAAGAAGGCAAGGCAACAACCTCCCCCTTCCTCTTCCTTCCTCCAAACCAATTCTTTCTTTGTCGGTTGTTTAATCTTC
TGCGTTTTACTCTTCTTTTCATTTAGATTCATCAATCAGCCAACAATGAGCTCGGAGGAACCCAATTTGGACGAGTTCTTCGTCGAGAAGAAGCGCGCTAGAAACCCTTT
GGTCCCCGTCGGTGCACTTGTCACTGCTGGGGTTCTCACTGCTGGATTAATAAGCTTTAGACAAGGCAACTCTCAATTGGGGCAGATGCTAATGAGAGCTCGTGTGGTTG
TCCAAGGTGCTACAGTAGCACTGATGGTTGGCACGGCTTTCTACTATGGAGATAATCCTTGGCGGTCGAGTTAA
Protein sequenceShow/hide protein sequence
MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS