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Lsi02G003550 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G003550
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription factor PAR1-like
Genome locationchr02:3037762..3038013
RNA-Seq ExpressionLsi02G003550
SyntenyLsi02G003550
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055213.1 transcription factor PAR1-like [Cucumis melo var. makuwa]7.6e-2887.5Show/hide
Query:  MALADVMANSSSSSHHNVADSSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKLQ
        MALAD+MANSS   HHNVA SS KRKRREAREVRRKVQKLRWVVPGGRGLRREHLFA+TA+YILHL+LKVCALE+VLKLQ
Subjt:  MALADVMANSSSSSHHNVADSSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKLQ

KAE8124179.1 hypothetical protein FH972_019086 [Carpinus fangiana]4.3e-0759.65Show/hide
Query:  RKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKLQE
        R +R  R V+ KVQKL+ +VPGG GL+ ++LFA+TA+YILHLRL+V ALE+VL+L +
Subjt:  RKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKLQE

KAG6573044.1 Ubiquitin-conjugating enzyme E2 5, partial [Cucurbita argyrosperma subsp. sororia]1.9e-1567.09Show/hide
Query:  MALADVMANSSSSSHHNVADSSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKL
        MA  D++ NS+SS + NVA S LKRKRREARE+RRKVQKLRWVV GGR LRREHLFAKTA YIL+L   +     VL L
Subjt:  MALADVMANSSSSSHHNVADSSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKL

KAG6584233.1 hypothetical protein SDJN03_20165, partial [Cucurbita argyrosperma subsp. sororia]3.6e-2283.33Show/hide
Query:  SSSHHNVADSSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKLQEEA
        SS H NV   +LKRKRREAR+VRRKVQKLRWVVPGGRGL++EHLFAKTAHYILHLRLKVCAL+T+LKLQ+EA
Subjt:  SSSHHNVADSSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKLQEEA

KAG7019830.1 hypothetical protein SDJN02_18794, partial [Cucurbita argyrosperma subsp. argyrosperma]3.6e-2283.33Show/hide
Query:  SSSHHNVADSSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKLQEEA
        SS H NV   +LKRKRREAR+VRRKVQKLRWVVPGGRGL++EHLFAKTAHYILHLRLKVCAL+T+LKLQ+EA
Subjt:  SSSHHNVADSSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKLQEEA

TrEMBL top hitse value%identityAlignment
A0A0A0LQU9 UBC core domain-containing protein3.6e-0787.8Show/hide
Query:  MALADVMANSSSSSHHNVADSSLKRKRREAREVRRKVQKLR
        MALAD+MANSSSS HH+V  SSLKRKRREAREVRRKVQKLR
Subjt:  MALADVMANSSSSSHHNVADSSLKRKRREAREVRRKVQKLR

A0A438EHL0 BHLH domain-containing protein3.9e-0654.24Show/hide
Query:  SSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKL
        S  K +RR  R VRRKV+KL+ ++PGGRGL+ + LF +TA YILHLRL+V  L+ + K+
Subjt:  SSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKL

A0A438JND2 BHLH domain-containing protein3.9e-0654.24Show/hide
Query:  SSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKL
        S  K +RR  R VRRKV+KL+ ++PGGRGL+ + LF +TA YILHLRL+V  L+ + K+
Subjt:  SSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKL

A0A5A7UGX9 Transcription factor PAR1-like3.7e-2887.5Show/hide
Query:  MALADVMANSSSSSHHNVADSSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKLQ
        MALAD+MANSS   HHNVA SS KRKRREAREVRRKVQKLRWVVPGGRGLRREHLFA+TA+YILHL+LKVCALE+VLKLQ
Subjt:  MALADVMANSSSSSHHNVADSSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKLQ

A0A5N6RR97 Uncharacterized protein2.1e-0759.65Show/hide
Query:  RKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKLQE
        R +R  R V+ KVQKL+ +VPGG GL+ ++LFA+TA+YILHLRL+V ALE+VL+L +
Subjt:  RKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKLQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTAGCAGATGTGATGGCTAATTCCAGCTCCTCGTCTCATCATAATGTGGCTGATTCAAGCTTGAAGAGGAAGAGGAGAGAAGCACGAGAGGTTCGCCGGAAAGT
TCAGAAGCTCCGGTGGGTGGTGCCCGGTGGTCGAGGGTTGCGACGAGAACATCTCTTCGCCAAAACAGCTCATTATATATTGCATTTGAGATTGAAAGTTTGTGCTCTTG
AAACTGTTCTCAAATTGCAGGAAGAGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTAGCAGATGTGATGGCTAATTCCAGCTCCTCGTCTCATCATAATGTGGCTGATTCAAGCTTGAAGAGGAAGAGGAGAGAAGCACGAGAGGTTCGCCGGAAAGT
TCAGAAGCTCCGGTGGGTGGTGCCCGGTGGTCGAGGGTTGCGACGAGAACATCTCTTCGCCAAAACAGCTCATTATATATTGCATTTGAGATTGAAAGTTTGTGCTCTTG
AAACTGTTCTCAAATTGCAGGAAGAGGCTTGA
Protein sequenceShow/hide protein sequence
MALADVMANSSSSSHHNVADSSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKLQEEA