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Lsi02G003600 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G003600
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSpermidine synthase 1-like
Genome locationchr02:3065996..3066217
RNA-Seq ExpressionLsi02G003600
SyntenyLsi02G003600
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055218.1 spermidine synthase 1-like [Cucumis melo var. makuwa]7.6e-1670.15Show/hide
Query:  MAFQNDV-SSPTKLRLFAPITEIEHNEPIKLDSFSPIQNETQNGAQNGTSFSPVFPGCYVDIAPGYP
        MAFQN V SSP K  L  P  E   NEPI++ SFSPIQN TQNG Q+G SFSPVFPGCYVDIAP YP
Subjt:  MAFQNDV-SSPTKLRLFAPITEIEHNEPIKLDSFSPIQNETQNGAQNGTSFSPVFPGCYVDIAPGYP

TYJ99147.1 spermidine synthase 1-like [Cucumis melo var. makuwa]7.6e-1670.15Show/hide
Query:  MAFQNDV-SSPTKLRLFAPITEIEHNEPIKLDSFSPIQNETQNGAQNGTSFSPVFPGCYVDIAPGYP
        MAFQN V SSP K  L  P  E   NEPI++ SFSPIQN TQNG Q+G SFSPVFPGCYVDIAP YP
Subjt:  MAFQNDV-SSPTKLRLFAPITEIEHNEPIKLDSFSPIQNETQNGAQNGTSFSPVFPGCYVDIAPGYP

XP_008446082.2 PREDICTED: spermidine synthase 1-like [Cucumis melo]8.7e-1271.15Show/hide
Query:  LFAPITEIEHNEPIKLDSFSPIQNETQNGAQNGTSFSPVFPGCYVDIAPGYP
        L  P  E   NEPI++ SFSPIQN TQNG Q+G SFSPVFPGCYVDIAP YP
Subjt:  LFAPITEIEHNEPIKLDSFSPIQNETQNGAQNGTSFSPVFPGCYVDIAPGYP

XP_031737488.1 spermidine synthase 1 [Cucumis sativus]1.6e-1367.16Show/hide
Query:  MAFQNDV-SSPTKLRLFAPITEIEHNEPIKLDSFSPIQNETQNGAQNGTSFSPVFPGCYVDIAPGYP
        M FQN V SSP K  L AP  E  HNEPI++ SFSPI    QNG QNG SFSP FPGCYVDIAP YP
Subjt:  MAFQNDV-SSPTKLRLFAPITEIEHNEPIKLDSFSPIQNETQNGAQNGTSFSPVFPGCYVDIAPGYP

XP_038893662.1 spermidine synthase 2-like [Benincasa hispida]2.2e-1567.14Show/hide
Query:  MAFQNDVSSPTKLRLFAPITEIEHNEPIKLDSFSPIQ----NETQNGAQNGTSFSPVFPGCYVDIAPGYP
        M FQN VSS TK +L  P    +HNE +K+ SFSPIQ    N TQNGAQN TSFSPVFPGCYVDIAP YP
Subjt:  MAFQNDVSSPTKLRLFAPITEIEHNEPIKLDSFSPIQ----NETQNGAQNGTSFSPVFPGCYVDIAPGYP

TrEMBL top hitse value%identityAlignment
A0A0A0LQV4 PABS domain-containing protein7.7e-1467.16Show/hide
Query:  MAFQNDV-SSPTKLRLFAPITEIEHNEPIKLDSFSPIQNETQNGAQNGTSFSPVFPGCYVDIAPGYP
        M FQN V SSP K  L AP  E  HNEPI++ SFSPI    QNG QNG SFSP FPGCYVDIAP YP
Subjt:  MAFQNDV-SSPTKLRLFAPITEIEHNEPIKLDSFSPIQNETQNGAQNGTSFSPVFPGCYVDIAPGYP

A0A1S3BF22 spermidine synthase 1-like4.2e-1271.15Show/hide
Query:  LFAPITEIEHNEPIKLDSFSPIQNETQNGAQNGTSFSPVFPGCYVDIAPGYP
        L  P  E   NEPI++ SFSPIQN TQNG Q+G SFSPVFPGCYVDIAP YP
Subjt:  LFAPITEIEHNEPIKLDSFSPIQNETQNGAQNGTSFSPVFPGCYVDIAPGYP

A0A5A7UJN5 Spermidine synthase 1-like3.7e-1670.15Show/hide
Query:  MAFQNDV-SSPTKLRLFAPITEIEHNEPIKLDSFSPIQNETQNGAQNGTSFSPVFPGCYVDIAPGYP
        MAFQN V SSP K  L  P  E   NEPI++ SFSPIQN TQNG Q+G SFSPVFPGCYVDIAP YP
Subjt:  MAFQNDV-SSPTKLRLFAPITEIEHNEPIKLDSFSPIQNETQNGAQNGTSFSPVFPGCYVDIAPGYP

A0A5D3BJ52 Spermidine synthase 1-like3.7e-1670.15Show/hide
Query:  MAFQNDV-SSPTKLRLFAPITEIEHNEPIKLDSFSPIQNETQNGAQNGTSFSPVFPGCYVDIAPGYP
        MAFQN V SSP K  L  P  E   NEPI++ SFSPIQN TQNG Q+G SFSPVFPGCYVDIAP YP
Subjt:  MAFQNDV-SSPTKLRLFAPITEIEHNEPIKLDSFSPIQNETQNGAQNGTSFSPVFPGCYVDIAPGYP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATTTCAAAATGATGTCTCTTCTCCCACAAAACTTCGACTCTTTGCCCCTATCACTGAAATTGAACATAATGAGCCTATAAAACTCGATTCTTTTTCTCCTATTCA
AAACGAGACTCAAAATGGAGCTCAAAATGGGACCTCTTTTTCGCCTGTTTTTCCAGGCTGTTATGTCGATATTGCTCCTGGCTATCCGGGTATTTTTTTTTTACCTACAT
AG
mRNA sequenceShow/hide mRNA sequence
ATGGCATTTCAAAATGATGTCTCTTCTCCCACAAAACTTCGACTCTTTGCCCCTATCACTGAAATTGAACATAATGAGCCTATAAAACTCGATTCTTTTTCTCCTATTCA
AAACGAGACTCAAAATGGAGCTCAAAATGGGACCTCTTTTTCGCCTGTTTTTCCAGGCTGTTATGTCGATATTGCTCCTGGCTATCCGGGTATTTTTTTTTTACCTACAT
AG
Protein sequenceShow/hide protein sequence
MAFQNDVSSPTKLRLFAPITEIEHNEPIKLDSFSPIQNETQNGAQNGTSFSPVFPGCYVDIAPGYPGIFFLPT