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Lsi02G003620 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G003620
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type domain-containing protein
Genome locationchr02:3086631..3087193
RNA-Seq ExpressionLsi02G003620
SyntenyLsi02G003620
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KCW49298.1 hypothetical protein EUGRSUZ_K02856 [Eucalyptus grandis]3.2e-0848.78Show/hide
Query:  VLLVVGIAVLVVIHVCIVGRALR-----GEGIWRRNSNYGMKRFSKEDLEKLPCYEY----KMRDLEMECGTCFAAVTGGRR
        VLL +GIAVLVVIHVCIVGRA R       G+ +RNSN    + S EDL+KLPC+EY    K  D + +C  C      G +
Subjt:  VLLVVGIAVLVVIHVCIVGRALR-----GEGIWRRNSNYGMKRFSKEDLEKLPCYEY----KMRDLEMECGTCFAAVTGGRR

XP_004152551.1 uncharacterized protein LOC101222125 [Cucumis sativus]2.0e-1576.12Show/hide
Query:  VLLVVGIAVLVVIHVCIVGRALRGEGIWR-----RNSNYGMKRFSKEDLEKLPCYEY--KMRDLEME
        VLLVVGIAVLVVIHVCIVGRALR EGIWR      N++YGMKRFS EDLEK+PCYEY  K+ D EME
Subjt:  VLLVVGIAVLVVIHVCIVGRALRGEGIWR-----RNSNYGMKRFSKEDLEKLPCYEY--KMRDLEME

XP_018720505.1 RING-H2 finger protein ATL74 [Eucalyptus grandis]3.2e-0848.78Show/hide
Query:  VLLVVGIAVLVVIHVCIVGRALR-----GEGIWRRNSNYGMKRFSKEDLEKLPCYEY----KMRDLEMECGTCFAAVTGGRR
        VLL +GIAVLVVIHVCIVGRA R       G+ +RNSN    + S EDL+KLPC+EY    K  D + +C  C      G +
Subjt:  VLLVVGIAVLVVIHVCIVGRALR-----GEGIWRRNSNYGMKRFSKEDLEKLPCYEY----KMRDLEMECGTCFAAVTGGRR

XP_022954431.1 RING-H2 finger protein ATL56-like [Cucurbita moschata]1.2e-1059.26Show/hide
Query:  VLLVVGIAVLVVIHVCIVGRALRG--EGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECGTCFAAVTGGRR
        VLL+VGIAVLVVIHVCIVGRA RG  EGIWR  SN G K  S +DLEKLPCYEYK  +      +++EC  C      G R
Subjt:  VLLVVGIAVLVVIHVCIVGRALRG--EGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECGTCFAAVTGGRR

XP_022994122.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]1.2e-1059.26Show/hide
Query:  VLLVVGIAVLVVIHVCIVGRALRG--EGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECGTCFAAVTGGRR
        VLL+VGIAVLVVIHVCIVGRA RG  EGIWR  SN G K  S +DLEKLPCYEYK  +      +++EC  C      G R
Subjt:  VLLVVGIAVLVVIHVCIVGRALRG--EGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECGTCFAAVTGGRR

TrEMBL top hitse value%identityAlignment
A0A059A647 RING-type domain-containing protein1.5e-0848.78Show/hide
Query:  VLLVVGIAVLVVIHVCIVGRALR-----GEGIWRRNSNYGMKRFSKEDLEKLPCYEY----KMRDLEMECGTCFAAVTGGRR
        VLL +GIAVLVVIHVCIVGRA R       G+ +RNSN    + S EDL+KLPC+EY    K  D + +C  C      G +
Subjt:  VLLVVGIAVLVVIHVCIVGRALR-----GEGIWRRNSNYGMKRFSKEDLEKLPCYEY----KMRDLEMECGTCFAAVTGGRR

A0A5N5I0S3 RING-H2 finger protein ATL64-like1.1e-0642.17Show/hide
Query:  VLLVVGIAVLVVIHVCIVGRAL-----RGEGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRDLEM-----ECGTCFAAVTGGRR
        +LL VGI VLVVIHVCIVGRA      +G  + +R+S +G++R S E+L  LPC++YK  +        +C  C  +  GG +
Subjt:  VLLVVGIAVLVVIHVCIVGRAL-----RGEGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRDLEM-----ECGTCFAAVTGGRR

A0A6J1GQW8 RING-H2 finger protein ATL56-like5.6e-1159.26Show/hide
Query:  VLLVVGIAVLVVIHVCIVGRALRG--EGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECGTCFAAVTGGRR
        VLL+VGIAVLVVIHVCIVGRA RG  EGIWR  SN G K  S +DLEKLPCYEYK  +      +++EC  C      G R
Subjt:  VLLVVGIAVLVVIHVCIVGRALRG--EGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECGTCFAAVTGGRR

A0A6J1JUU5 RING-H2 finger protein ATL56-like5.6e-1159.26Show/hide
Query:  VLLVVGIAVLVVIHVCIVGRALRG--EGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECGTCFAAVTGGRR
        VLL+VGIAVLVVIHVCIVGRA RG  EGIWR  SN G K  S +DLEKLPCYEYK  +      +++EC  C      G R
Subjt:  VLLVVGIAVLVVIHVCIVGRALRG--EGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECGTCFAAVTGGRR

W1P7Q1 RING-type domain-containing protein2.9e-0752.63Show/hide
Query:  VLLVVGIAVLVVIHVCIVGRALR-GEGIWRRNSNYG-MKRFSKEDLEKLPCYEYKMRDLE---MECGTCFAAVTGG
        +LL VGI VLV+IHVCIVGRALR G  I R N N G     S+EDL++LPC++YK  D E   ++C  C     GG
Subjt:  VLLVVGIAVLVVIHVCIVGRALR-GEGIWRRNSNYG-MKRFSKEDLEKLPCYEYKMRDLE---MECGTCFAAVTGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGTTCTTTTGGTTGTGGGAATAGCTGTTTTGGTAGTGATTCATGTGTGTATTGTTGGGAGAGCTTTAAGAGGAGAAGGAATTTGGAGAAGAAATAGTAATTATGG
GATGAAGAGATTTTCAAAGGAGGATTTGGAGAAGCTTCCTTGTTATGAGTACAAAATGAGGGATTTAGAAATGGAATGTGGTACGTGTTTTGCCGCCGTCACTGGTGGCC
GGAGGAAGTTGAAGTTCATAACAAGCGCCGCCGTCTACTGTAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGTTCTTTTGGTTGTGGGAATAGCTGTTTTGGTAGTGATTCATGTGTGTATTGTTGGGAGAGCTTTAAGAGGAGAAGGAATTTGGAGAAGAAATAGTAATTATGG
GATGAAGAGATTTTCAAAGGAGGATTTGGAGAAGCTTCCTTGTTATGAGTACAAAATGAGGGATTTAGAAATGGAATGTGGTACGTGTTTTGCCGCCGTCACTGGTGGCC
GGAGGAAGTTGAAGTTCATAACAAGCGCCGCCGTCTACTGTAATTGA
Protein sequenceShow/hide protein sequence
MTVLLVVGIAVLVVIHVCIVGRALRGEGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRDLEMECGTCFAAVTGGRRKLKFITSAAVYCN