CuGenDBv2

Gene ID	Lsi02G003800
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24
Genome location	chr02:3276580..3279600
RNA-Seq Expression	Lsi02G003800
Synteny	Lsi02G003800
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152481.1 uncharacterized protein LOC101204093 [Cucumis sativus]

5.9e-97

95.83

Show/hide

Query:  SRKKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGV
        S KKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGV
Subjt:  SRKKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGV

Query:  HDVFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEENLNK
        HDVFNVAAAGSATAATFGLILPGSLKWRARNVA+GSVLGAAFCFPLGW+HLKLVEKANEGNEAL Y NTVQ+G+SKS VGAAIERFEENLNK
Subjt:  HDVFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEENLNK

XP_008438544.1 PREDICTED: uncharacterized protein LOC103483606 [Cucumis melo]

8.6e-96

94.79

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Query:  SRKKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGV
        S KKLPGTVNWGTATTI VFAGM YGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGV
Subjt:  SRKKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGV

Query:  HDVFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEENLNK
        HDVFNVAAAGSATAATFGLILPGSLKWRARNVA+GSVLGAAFCFPLGW+HLKLVEKANEGNEAL Y NTVQKG+SKS VGAAIERFEEN+NK
Subjt:  HDVFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEENLNK

XP_022954601.1 uncharacterized protein LOC111456818 [Cucurbita moschata]

1.5e-95

95.26

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Query:  KKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGVHD
        KKLPGTVNWGTATTI VFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGVHD
Subjt:  KKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGVHD

Query:  VFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEENLNK
        VFNVAAAGSATAATFGLILPGSLKWRARNVA+G+VLGAAFCFPLGWLHLKLVEKANEGNEALAYP+ +QKGESKS VGAAIER EE+LNK
Subjt:  VFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEENLNK

XP_022994666.1 uncharacterized protein LOC111490310 [Cucurbita maxima]

3.3e-95

94.74

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Query:  KKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGVHD
        KKLPGTVNWGTATTI VFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGVHD
Subjt:  KKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGVHD

Query:  VFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEENLNK
        VFNVAAAGSATAATFGLILPGSLKWRARN+A+GSVLGAAFCFPLGWLHLKLVEKANEGNEALAYP+ +QKGESKS VGAAI+R EE+LNK
Subjt:  VFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEENLNK

XP_038893751.1 uncharacterized protein LOC120082584 [Benincasa hispida]

7.0e-98

97.4

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Query:  SRKKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGV
        S KKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKR V
Subjt:  SRKKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGV

Query:  HDVFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEENLNK
        HDVFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEAL YPN VQKGESKS VGAAIERFEENLNK
Subjt:  HDVFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEENLNK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LR90 Uncharacterized protein

2.9e-97

95.83

Show/hide

Query:  SRKKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGV
        S KKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGV
Subjt:  SRKKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGV

Query:  HDVFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEENLNK
        HDVFNVAAAGSATAATFGLILPGSLKWRARNVA+GSVLGAAFCFPLGW+HLKLVEKANEGNEAL Y NTVQ+G+SKS VGAAIERFEENLNK
Subjt:  HDVFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEENLNK

A0A1S3AWM6 uncharacterized protein LOC103483606

4.2e-96

94.79

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Query:  SRKKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGV
        S KKLPGTVNWGTATTI VFAGM YGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGV
Subjt:  SRKKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGV

Query:  HDVFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEENLNK
        HDVFNVAAAGSATAATFGLILPGSLKWRARNVA+GSVLGAAFCFPLGW+HLKLVEKANEGNEAL Y NTVQKG+SKS VGAAIERFEEN+NK
Subjt:  HDVFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEENLNK

A0A5A7UKY0 Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24

4.2e-96

94.79

Show/hide

Query:  SRKKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGV
        S KKLPGTVNWGTATTI VFAGM YGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGV
Subjt:  SRKKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGV

Query:  HDVFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEENLNK
        HDVFNVAAAGSATAATFGLILPGSLKWRARNVA+GSVLGAAFCFPLGW+HLKLVEKANEGNEAL Y NTVQKG+SKS VGAAIERFEEN+NK
Subjt:  HDVFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEENLNK

A0A6J1GRB7 uncharacterized protein LOC111456818

7.1e-96

95.26

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Query:  KKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGVHD
        KKLPGTVNWGTATTI VFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGVHD
Subjt:  KKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGVHD

Query:  VFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEENLNK
        VFNVAAAGSATAATFGLILPGSLKWRARNVA+G+VLGAAFCFPLGWLHLKLVEKANEGNEALAYP+ +QKGESKS VGAAIER EE+LNK
Subjt:  VFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEENLNK

A0A6J1JZT3 uncharacterized protein LOC111490310

1.6e-95

94.74

Show/hide

Query:  KKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGVHD
        KKLPGTVNWGTATTI VFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGVHD
Subjt:  KKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGVHD

Query:  VFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEENLNK
        VFNVAAAGSATAATFGLILPGSLKWRARN+A+GSVLGAAFCFPLGWLHLKLVEKANEGNEALAYP+ +QKGESKS VGAAI+R EE+LNK
Subjt:  VFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEENLNK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G63000.1 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein

3.4e-74

69.95

Show/hide

Query:  DRPLDQCSFNQSRKKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYG
        ++P +    N SR  L G  NWGTAT +GVFAG+ YGGSKEA+ASVSKDAEV LK+GST DKREQ+RL+RDAMEKRFIRVTRGS++GG+RLGMFTA+F+ 
Subjt:  DRPLDQCSFNQSRKKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRLIRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYG

Query:  LQNLLAEKRGVHDVFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEEN
        LQN LAE RGVHDVFNV  AGSATAA FGLI+PGSL WRARNV LGSVLGA  CFPLGW+ LKL++KANEGN      +T   GE  S VGAAIER E+ 
Subjt:  LQNLLAEKRGVHDVFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYPNTVQKGESKSAVGAAIERFEEN

Query:  LNK
        L K
Subjt:  LNK

Sequences

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CDS sequence

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mRNA sequence

Show/hide mRNA sequence

ATGGTATACTCGAGTATAGCCATCTCCGCCTCTGCATCTTCATCGGACAAAACTCGGCACCTTCTGCTTGACTCTCGAGTCTCGACTTTGAGAGTGTCTGAATCTTACTT
GAGAACCGGCTTTTCTGATCGCCCACTTGATCAATGTTCATTTAACCAGAGTAGAAAAAAATTGCCCGGGACGGTGAACTGGGGTACGGCAACAACTATTGGAGTGTTTG
CAGGCATGTTTTATGGAGGAAGCAAAGAAGCGGCCGCTTCGGTGAGTAAGGATGCAGAAGTTACATTGAAGCTTGGTAGCACACCTGACAAGCGCGAACAATATAGGTTA
ATCAGAGATGCAATGGAGAAAAGATTTATCCGAGTTACACGAGGCTCAATAGTTGGTGGTGTGCGCCTTGGGATGTTTACAGCTGCATTTTATGGTCTACAAAATCTGCT
AGCTGAGAAGCGTGGTGTACATGATGTCTTCAATGTTGCTGCAGCTGGGTCCGCCACAGCTGCTACATTTGGTCTAATATTGCCAGGATCACTCAAGTGGCGTGCTAGGA
ATGTAGCGTTGGGATCTGTCCTAGGTGCAGCATTTTGCTTCCCTCTTGGTTGGCTTCATTTAAAGCTTGTAGAGAAAGCAAATGAGGGTAATGAAGCGCTTGCTTATCCT
AATACAGTTCAAAAGGGAGAATCAAAGAGTGCGGTCGGTGCTGCTATTGAGAGATTTGAAGAAAACTTGAACAAGTAGATTCAATGATCTCCTCTCCATTTTCCAGCATA
GCAAGATACCATGAACAAAGTCAAAGTGGAGTGATATACAGACCATCTGTCCATCCTTGGCGACTACCATTTTAGGAAGAAAACGTGTTTTATCTTGTTCCTTTAATCTT
ATTTCATTAGCAATCAGCCTTCTTATATAGGATTATCTTTTTGGGTTGTGTACCTTCGAGGATTTGTTTCATAAGCGAAATGTGAATTGATTCTTTCTTCAAACAATTCC
CTCTAGTTATGTTTATATAGCGACTTTGATCGCTTAATTATATGGATGTTGGAGATGATTCCAAATTAATTATATGGATATTGGGGTGCATACCCTCCTAACCTATGTAG
AGAGAAAGAGAGAGGGCCATCATGAGCTTTAATCATCTGACATGCTTTTTAGAGTCGCATAGTCTCAATCCAATAATAGATTGTGTAGAGATGTATTATTCGC

Protein sequence

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MVYSSIAISASASSSDKTRHLLLDSRVSTLRVSESYLRTGFSDRPLDQCSFNQSRKKLPGTVNWGTATTIGVFAGMFYGGSKEAAASVSKDAEVTLKLGSTPDKREQYRL
IRDAMEKRFIRVTRGSIVGGVRLGMFTAAFYGLQNLLAEKRGVHDVFNVAAAGSATAATFGLILPGSLKWRARNVALGSVLGAAFCFPLGWLHLKLVEKANEGNEALAYP
NTVQKGESKSAVGAAIERFEENLNK

Lsi02G003800 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome