; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G003870 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G003870
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionembryo defective 2759
Genome locationchr02:3315095..3320330
RNA-Seq ExpressionLsi02G003870
SyntenyLsi02G003870
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152483.1 uncharacterized protein LOC101204576 isoform X1 [Cucumis sativus]1.4e-8577.73Show/hide
Query:  GSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSARID
        GSYAEFSSRLS  N SLNLKQ VTS+RTVGRTEH  PLRSNIC                             FSVGTPRLCGPR NL RVSAFKS+ARID
Subjt:  GSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSARID

Query:  DETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSEIL
        DETGGVANGSKISS+ VKLKD D+CTETPKANNVP+CYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKE+++IL
Subjt:  DETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSEIL

Query:  RGVWFHFLGLNAAVKIPLLI
        +GVWFHFLGLNAAVKIPLL+
Subjt:  RGVWFHFLGLNAAVKIPLLI

XP_008438584.1 PREDICTED: uncharacterized protein LOC103483645 isoform X1 [Cucumis melo]1.2e-8777.48Show/hide
Query:  PNGSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSAR
        P GSYAE SSRLS  N SLNLKQ VTS+RTVGRTEH  PLRSNIC S                           FS+GTPRLCGPRPNL RVSAFKS+AR
Subjt:  PNGSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSAR

Query:  IDDETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSE
        IDDETGGVANGSKI+S+ VKLKDGDYCTETPK NNVP+CYASGANEDIAPSPAIQ LFKKWLELLRRQPVSQDVDGILE+LPSAEMSDTQQESNKKE+++
Subjt:  IDDETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSE

Query:  ILRGVWFHFLGLNAAVKIPLLI
        ILRGVWFHFLGLNAAVKIPLLI
Subjt:  ILRGVWFHFLGLNAAVKIPLLI

XP_008438592.1 PREDICTED: uncharacterized protein LOC103483645 isoform X2 [Cucumis melo]5.8e-8777.03Show/hide
Query:  PNGSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSAR
        P GSYAE SSRLS  N SLNLKQ VTS+RTVGRTEH  PLRSNIC                             FS+GTPRLCGPRPNL RVSAFKS+AR
Subjt:  PNGSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSAR

Query:  IDDETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSE
        IDDETGGVANGSKI+S+ VKLKDGDYCTETPK NNVP+CYASGANEDIAPSPAIQ LFKKWLELLRRQPVSQDVDGILE+LPSAEMSDTQQESNKKE+++
Subjt:  IDDETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSE

Query:  ILRGVWFHFLGLNAAVKIPLLI
        ILRGVWFHFLGLNAAVKIPLLI
Subjt:  ILRGVWFHFLGLNAAVKIPLLI

XP_038895496.1 uncharacterized protein LOC120083720 isoform X1 [Benincasa hispida]1.3e-9181.98Show/hide
Query:  PNGSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSAR
        P GSYAEFSSRLSS N SLNLK CVTSIRTVGR EHR PLRSNICL                             SVGTPRLCG RPNL +VSAFKSSAR
Subjt:  PNGSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSAR

Query:  IDDETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSE
        IDDETGGVANGSKI SFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKE+SE
Subjt:  IDDETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSE

Query:  ILRGVWFHFLGLNAAVKIPLLI
        ILRGVWFHFLGLNAAVKIPLLI
Subjt:  ILRGVWFHFLGLNAAVKIPLLI

XP_038895499.1 uncharacterized protein LOC120083720 isoform X2 [Benincasa hispida]6.6e-9182.27Show/hide
Query:  GSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSARID
        GSYAEFSSRLSS N SLNLK CVTSIRTVGR EHR PLRSNICL                             SVGTPRLCG RPNL +VSAFKSSARID
Subjt:  GSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSARID

Query:  DETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSEIL
        DETGGVANGSKI SFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKE+SEIL
Subjt:  DETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSEIL

Query:  RGVWFHFLGLNAAVKIPLLI
        RGVWFHFLGLNAAVKIPLLI
Subjt:  RGVWFHFLGLNAAVKIPLLI

TrEMBL top hitse value%identityAlignment
A0A0A0LQY2 Uncharacterized protein6.9e-8677.73Show/hide
Query:  GSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSARID
        GSYAEFSSRLS  N SLNLKQ VTS+RTVGRTEH  PLRSNIC                             FSVGTPRLCGPR NL RVSAFKS+ARID
Subjt:  GSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSARID

Query:  DETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSEIL
        DETGGVANGSKISS+ VKLKD D+CTETPKANNVP+CYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKE+++IL
Subjt:  DETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSEIL

Query:  RGVWFHFLGLNAAVKIPLLI
        +GVWFHFLGLNAAVKIPLL+
Subjt:  RGVWFHFLGLNAAVKIPLLI

A0A1S3AWE7 uncharacterized protein LOC103483645 isoform X22.8e-8777.03Show/hide
Query:  PNGSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSAR
        P GSYAE SSRLS  N SLNLKQ VTS+RTVGRTEH  PLRSNIC                             FS+GTPRLCGPRPNL RVSAFKS+AR
Subjt:  PNGSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSAR

Query:  IDDETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSE
        IDDETGGVANGSKI+S+ VKLKDGDYCTETPK NNVP+CYASGANEDIAPSPAIQ LFKKWLELLRRQPVSQDVDGILE+LPSAEMSDTQQESNKKE+++
Subjt:  IDDETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSE

Query:  ILRGVWFHFLGLNAAVKIPLLI
        ILRGVWFHFLGLNAAVKIPLLI
Subjt:  ILRGVWFHFLGLNAAVKIPLLI

A0A1S3AXE5 uncharacterized protein LOC103483645 isoform X15.7e-8877.48Show/hide
Query:  PNGSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSAR
        P GSYAE SSRLS  N SLNLKQ VTS+RTVGRTEH  PLRSNIC S                           FS+GTPRLCGPRPNL RVSAFKS+AR
Subjt:  PNGSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSAR

Query:  IDDETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSE
        IDDETGGVANGSKI+S+ VKLKDGDYCTETPK NNVP+CYASGANEDIAPSPAIQ LFKKWLELLRRQPVSQDVDGILE+LPSAEMSDTQQESNKKE+++
Subjt:  IDDETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSE

Query:  ILRGVWFHFLGLNAAVKIPLLI
        ILRGVWFHFLGLNAAVKIPLLI
Subjt:  ILRGVWFHFLGLNAAVKIPLLI

A0A6J1C7C1 uncharacterized protein LOC1110090514.3e-8073.42Show/hide
Query:  PNGSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSAR
        P GS  EFSSRLSS N SL LKQ VTS+RT GR EH   LRSNICL                             SVGTPRLCGPRPNL RVSAFKSSAR
Subjt:  PNGSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSAR

Query:  IDDETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSE
        I+D+T G  NGSKI ++S+KLKDGDYCTETPKANNVPLCYASGANEDIAPSPAI KLFKKWL LLRRQPVSQDVDGIL++LPSAEMS+TQQESNKKE+SE
Subjt:  IDDETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSE

Query:  ILRGVWFHFLGLNAAVKIPLLI
        I RGVWFHFLGLNAAVKIPLLI
Subjt:  ILRGVWFHFLGLNAAVKIPLLI

A0A6J1GRD8 uncharacterized protein LOC1114568156.5e-7670.72Show/hide
Query:  PNGSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSAR
        P GSYAEF SR SS N SL LKQ VTS+RT    EH  PLRSN+CL                             SVGTPRL GPRPNL RVSAFKSSAR
Subjt:  PNGSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSAR

Query:  IDDETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSE
        IDD TGGVANGSKI ++ VK KD D CTETPKANNVPLCYASGANEDIAPSPAIQ LFKKWLELLRRQPV +DVD ILEDLPSA MSD QQESNKK+++E
Subjt:  IDDETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSE

Query:  ILRGVWFHFLGLNAAVKIPLLI
        ILRGVWFHF GLNAAVKIPLL+
Subjt:  ILRGVWFHFLGLNAAVKIPLLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G63050.1 embryo defective 27591.5e-1939.1Show/hide
Query:  FSVGTPRLCGPRPNLSRVSAFKSSARIDDETGGVANGSKISSFSVKLK-----DGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQP
        FS+G+P   G R    RV++FK   + ++E+GG   G K+++ SVKL      D +    +PKA N    Y S   + +   PAIQKLFKKWL LLR Q 
Subjt:  FSVGTPRLCGPRPNLSRVSAFKSSARIDDETGGVANGSKISSFSVKLK-----DGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQP

Query:  VSQDVDGIL--EDLPSAEMSDTQQESNKKENSEILRG-VWFHFLGLNAAVKIPLLI
          Q +D  L  E +P     +T+ E  K E+ +  +  VW  F  L+AA+KIPLL+
Subjt:  VSQDVDGIL--EDLPSAEMSDTQQESNKKENSEILRG-VWFHFLGLNAAVKIPLLI

AT5G63050.2 embryo defective 27591.5e-1939.1Show/hide
Query:  FSVGTPRLCGPRPNLSRVSAFKSSARIDDETGGVANGSKISSFSVKLK-----DGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQP
        FS+G+P   G R    RV++FK   + ++E+GG   G K+++ SVKL      D +    +PKA N    Y S   + +   PAIQKLFKKWL LLR Q 
Subjt:  FSVGTPRLCGPRPNLSRVSAFKSSARIDDETGGVANGSKISSFSVKLK-----DGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQP

Query:  VSQDVDGIL--EDLPSAEMSDTQQESNKKENSEILRG-VWFHFLGLNAAVKIPLLI
          Q +D  L  E +P     +T+ E  K E+ +  +  VW  F  L+AA+KIPLL+
Subjt:  VSQDVDGIL--EDLPSAEMSDTQQESNKKENSEILRG-VWFHFLGLNAAVKIPLLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGGAATTAGTGCACGAAGGTTTTGTGTAATAATAATTGATAAGCTTTTGCTAGATGCGGAATACGTAGTTGCCTTTGTGCACTATTCAAGTTACATGCTTTCAGC
GGGCATGGGTAGTCATGATACTCGTAATTATTCAGCTCCTCCAAATGGTTCTTATGCAGAATTTTCATCAAGATTGTCATCCGGGAATGCCTCTTTGAATTTAAAACAGT
GTGTAACATCCATTCGCACAGTTGGGAGAACTGAACACCGTGCACCATTGAGGAGCAATATTTGTTTAAGTTTCTCTGATGTGCATGGGTATCCTTGTGTCATATTTAAA
GTAATGTATGGATCCTTGTCCCACAAACTCATGGAACTTATTTTCAGTGTAGGGACTCCTCGATTATGTGGCCCAAGACCTAATCTCTCGAGAGTTTCTGCCTTCAAAAG
CAGTGCTCGTATAGATGATGAGACAGGTGGAGTAGCAAATGGATCCAAGATTTCCAGCTTCTCTGTAAAGCTTAAAGATGGTGATTATTGTACAGAAACTCCAAAGGCAA
ACAATGTTCCACTTTGCTATGCCTCTGGAGCAAATGAGGATATTGCTCCATCCCCTGCTATTCAAAAATTGTTCAAGAAATGGTTGGAATTGTTGCGCAGACAACCTGTA
AGTCAAGATGTGGATGGGATTCTGGAGGATCTGCCCTCAGCAGAGATGTCAGATACCCAGCAAGAGTCCAATAAAAAGGAAAACAGCGAGATTCTTCGAGGGGTTTGGTT
CCACTTTCTGGGACTTAATGCAGCAGTGAAGATACCTTTGCTAATATTATCTTTACCAAGAGCAAAGGCTAGATCCGGTCTCTTTCTCACATTATCTAAGAAGCATGATT
CTTCATTAAGGCAGGGCTGGCCGACCACTTTTAATGTGGGATTCTTGGTGTTTAATGAGCTAATGAAGGATCAGAACAACTTGAGTTGTCTGATTTTTGTGATTGTTGTG
ATGAGGATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTAGGAATTAGTGCACGAAGGTTTTGTGTAATAATAATTGATAAGCTTTTGCTAGATGCGGAATACGTAGTTGCCTTTGTGCACTATTCAAGTTACATGCTTTCAGC
GGGCATGGGTAGTCATGATACTCGTAATTATTCAGCTCCTCCAAATGGTTCTTATGCAGAATTTTCATCAAGATTGTCATCCGGGAATGCCTCTTTGAATTTAAAACAGT
GTGTAACATCCATTCGCACAGTTGGGAGAACTGAACACCGTGCACCATTGAGGAGCAATATTTGTTTAAGTTTCTCTGATGTGCATGGGTATCCTTGTGTCATATTTAAA
GTAATGTATGGATCCTTGTCCCACAAACTCATGGAACTTATTTTCAGTGTAGGGACTCCTCGATTATGTGGCCCAAGACCTAATCTCTCGAGAGTTTCTGCCTTCAAAAG
CAGTGCTCGTATAGATGATGAGACAGGTGGAGTAGCAAATGGATCCAAGATTTCCAGCTTCTCTGTAAAGCTTAAAGATGGTGATTATTGTACAGAAACTCCAAAGGCAA
ACAATGTTCCACTTTGCTATGCCTCTGGAGCAAATGAGGATATTGCTCCATCCCCTGCTATTCAAAAATTGTTCAAGAAATGGTTGGAATTGTTGCGCAGACAACCTGTA
AGTCAAGATGTGGATGGGATTCTGGAGGATCTGCCCTCAGCAGAGATGTCAGATACCCAGCAAGAGTCCAATAAAAAGGAAAACAGCGAGATTCTTCGAGGGGTTTGGTT
CCACTTTCTGGGACTTAATGCAGCAGTGAAGATACCTTTGCTAATATTATCTTTACCAAGAGCAAAGGCTAGATCCGGTCTCTTTCTCACATTATCTAAGAAGCATGATT
CTTCATTAAGGCAGGGCTGGCCGACCACTTTTAATGTGGGATTCTTGGTGTTTAATGAGCTAATGAAGGATCAGAACAACTTGAGTTGTCTGATTTTTGTGATTGTTGTG
ATGAGGATGTAG
Protein sequenceShow/hide protein sequence
MLGISARRFCVIIIDKLLLDAEYVVAFVHYSSYMLSAGMGSHDTRNYSAPPNGSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFK
VMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSARIDDETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPV
SQDVDGILEDLPSAEMSDTQQESNKKENSEILRGVWFHFLGLNAAVKIPLLILSLPRAKARSGLFLTLSKKHDSSLRQGWPTTFNVGFLVFNELMKDQNNLSCLIFVIVV
MRM